Literature DB >> 22815455

Genome sequence of Aerococcus viridans LL1.

Nan Qin1, Beiwen Zheng, Fengling Yang, Yanfei Chen, Jing Guo, Xinjun Hu, Lanjuan Li.   

Abstract

Aerococcus viridans is a catalase-negative Gram-positive bacterium and has been described as an airborne organism widely distributed in the hospital environment or in clinical specimens. We isolated A. viridans strain LL1 from indoor dust samples collected by a patient. Here, we prepared a genome sequence for this strain consisting of 31 contigs totaling 1,994,039 bases and a GC content of 39.42%.

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Year:  2012        PMID: 22815455      PMCID: PMC3416522          DOI: 10.1128/JB.00786-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  13 in total

1.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Tandem repeats finder: a program to analyze DNA sequences.

Authors:  G Benson
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Urinary tract infection caused by Aerococcus viridans, a case report.

Authors:  Anuradha Gopalachar; Ronda L Akins; William R Davis; Afzal A Siddiqui
Journal:  Med Sci Monit       Date:  2004-10-26

6.  An unusual bacterium, Aerococcus viridans, and four cases of infective endocarditis.

Authors:  Gabriel-Adrian Popescu; Elisabeta Benea; Elena Mitache; Cornelia Piper; Dieter Horstkotte
Journal:  J Heart Valve Dis       Date:  2005-05

7.  Spondylodiscitis due to Aerococcus viridans.

Authors:  A Nasoodi; A G Ali; W J Gray; S A Hedderwick
Journal:  J Med Microbiol       Date:  2008-04       Impact factor: 2.472

8.  Aerococcus viridans in the hospital environment.

Authors:  M A Kerbaugh; J B Evans
Journal:  Appl Microbiol       Date:  1968-03

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  KAAS: an automatic genome annotation and pathway reconstruction server.

Authors:  Yuki Moriya; Masumi Itoh; Shujiro Okuda; Akiyasu C Yoshizawa; Minoru Kanehisa
Journal:  Nucleic Acids Res       Date:  2007-05-25       Impact factor: 16.971

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