Literature DB >> 22815449

Genome sequences of two thermophilic Bacillus licheniformis strains, efficient producers of platform chemical 2,3-butanediol.

Lixiang Li1, Fei Su, Yu Wang, Lijie Zhang, Cuicui Liu, Jingwen Li, Cuiqing Ma, Ping Xu.   

Abstract

Both Bacillus licheniformis strains 10-1-A and 5-2-D are efficient producers of 2,3-butanediol. Here we present 4.3-Mb and 4.2-Mb assemblies of their genomes. The key genes for the regulation and metabolism of 2,3-butanediol production were annotated, which may provide further insights into the molecular mechanism for the production of 2,3-butanediol with high yield and productivity.

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Year:  2012        PMID： 22815449      PMCID： PMC3416533          DOI： 10.1128/JB.00768-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

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Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

Review 2.  Biotechnological production of 2,3-butanediol--current state and prospects.

Authors:  E Celińska; W Grajek
Journal:  Biotechnol Adv       Date:  2009-05-13       Impact factor: 14.227

3.  Enhanced 2,3-butanediol production by Klebsiella pneumoniae SDM.

Authors:  Cuiqing Ma; Ailong Wang; Jiayang Qin; Lixiang Li; Xulu Ai; Tianyi Jiang; Hongzhi Tang; Ping Xu
Journal:  Appl Microbiol Biotechnol       Date:  2008-10-24       Impact factor: 4.813

Review 4.  Microbial 2,3-butanediol production: a state-of-the-art review.

Authors:  Xiao-Jun Ji; He Huang; Ping-Kai Ouyang
Journal:  Biotechnol Adv       Date:  2011-01-24       Impact factor: 14.227

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Production of (2S,3S)-2,3-butanediol and (3S)-acetoin from glucose using resting cells of Klebsiella pneumonia and Bacillus subtilis.

Authors:  Zhen Liu; Jiayang Qin; Chao Gao; Dongliang Hua; Cuiqing Ma; Lixiang Li; Yu Wang; Ping Xu
Journal:  Bioresour Technol       Date:  2011-09-08       Impact factor: 9.642

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

8.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

9.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169

10.  Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.

Authors:  Michael W Rey; Preethi Ramaiya; Beth A Nelson; Shari D Brody-Karpin; Elizabeth J Zaretsky; Maria Tang; Alfredo Lopez de Leon; Henry Xiang; Veronica Gusti; Ib Groth Clausen; Peter B Olsen; Michael D Rasmussen; Jens T Andersen; Per L Jørgensen; Thomas S Larsen; Alexei Sorokin; Alexander Bolotin; Alla Lapidus; Nathalie Galleron; S Dusko Ehrlich; Randy M Berka
Journal:  Genome Biol       Date:  2004-09-13       Impact factor: 13.583
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  8 in total

1.  Draft genome comparison of representatives of the three dominant genotype groups of dairy Bacillus licheniformis strains.

Authors:  Rajat Dhakal; R Brent Seale; Hilton C Deeth; Heather Craven; Mark S Turner
Journal:  Appl Environ Microbiol       Date:  2014-03-21       Impact factor: 4.792

2.  Efficient simultaneous saccharification and fermentation of inulin to 2,3-butanediol by thermophilic Bacillus licheniformis ATCC 14580.

Authors:  Lixiang Li; Chao Chen; Kun Li; Yu Wang; Chao Gao; Cuiqing Ma; Ping Xu
Journal:  Appl Environ Microbiol       Date:  2014-08-08       Impact factor: 4.792

3.  Draft Genome Sequence of Bacillus licheniformis CG-B52, a Highly Virulent Bacterium of Pacific White Shrimp (Litopenaeus vannamei), Isolated from a Colombian Caribbean Aquaculture Outbreak.

Authors:  Eric J C Gálvez; Katerine Carrillo-Castro; Lina Zárate; Linda Güiza; Dietmar H Pieper; Erika García-Bonilla; Marcela Salazar; Howard Junca
Journal:  Genome Announc       Date:  2016-05-12

4.  Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216(T).

Authors:  Elleke F Bosma; Jasper J Koehorst; Sacha A F T van Hijum; Bernadet Renckens; Bastienne Vriesendorp; Antonius H P van de Weijer; Peter J Schaap; Willem M de Vos; John van der Oost; Richard van Kranenburg
Journal:  Stand Genomic Sci       Date:  2016-08-24

5.  Nitrous oxide emission by the non-denitrifying, nitrate ammonifier Bacillus licheniformis.

Authors:  Yihua Sun; Paul De Vos; Kim Heylen
Journal:  BMC Genomics       Date:  2016-01-19       Impact factor: 3.969

6.  A newly isolated Bacillus licheniformis strain thermophilically produces 2,3-butanediol, a platform and fuel bio-chemical.

Authors:  Lixiang Li; Lijie Zhang; Kun Li; Yu Wang; Chao Gao; Binbin Han; Cuiqing Ma; Ping Xu
Journal:  Biotechnol Biofuels       Date:  2013-08-28       Impact factor: 6.040

7.  Genome Sequence of Thermophilic Bacillus licheniformis Strain 3F-3, an Efficient Pentose-Utilizing Producer of 2,3-Butanediol.

Authors:  Lixiang Li; Yu Wang; Kai Wang; Kun Li; Cuiqing Ma; Ping Xu
Journal:  Genome Announc       Date:  2014-06-26

8.  Genome Sequence of meso-2,3-Butanediol-Producing Strain Serratia marcescens ATCC 14041.

Authors:  Lixiang Li; Yu Wang; Kun Li; Fei Su; Cuiqing Ma; Ping Xu
Journal:  Genome Announc       Date:  2014-06-19
  8 in total

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