Literature DB >> 22815446

Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria.

Soo-Je Park1, Rohit Ghai, Ana-Belén Martín-Cuadrado, Francisco Rodríguez-Valera, Man-Young Jung, Jong-Geol Kim, Sung-Keun Rhee.   

Abstract

Sulfur-oxidizing bacteria are common microorganisms in a variety of sulfide-rich environments. They play important roles in the global sulfur cycle on earth. Here, we present a high-quality draft genome sequence of a sulfur-oxidizing bacterium, "Candidatus Sulfurovum sediminum" strain AR, which belongs to the class Epsilonproteobacteria and dominated an enrichment culture from a marine sediment collected off Svalbard, within the Arctic Circle. Its genome contains genes for sulfur oxidation and carbon fixation. The size of the draft genome is 2.12 Mb, and the G+C content is 39.4%.

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Year:  2012        PMID： 22815446      PMCID： PMC3416546          DOI： 10.1128/JB.00741-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Filamentous "Epsilonproteobacteria" dominate microbial mats from sulfidic cave springs.

Authors:  Annette Summers Engel; Natuschka Lee; Megan L Porter; Libby A Stern; Philip C Bennett; Michael Wagner
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

2.  Genomic insights that advance the species definition for prokaryotes.

Authors:  Konstantinos T Konstantinidis; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-08       Impact factor: 11.205

Review 3.  The versatile epsilon-proteobacteria: key players in sulphidic habitats.

Authors:  Barbara J Campbell; Annette Summers Engel; Megan L Porter; Ken Takai
Journal:  Nat Rev Microbiol       Date:  2006-06       Impact factor: 60.633

4.  Hydrothermal vent gastropods from the same family (Provannidae) harbour epsilon- and gamma-proteobacterial endosymbionts.

Authors:  Hidetoshi Urakawa; Nicole Dubilier; Yoshihiro Fujiwara; Dale E Cunningham; Shigeaki Kojima; David A Stahl
Journal:  Environ Microbiol       Date:  2005-05       Impact factor: 5.491

5.  Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria.

Authors:  Michael Hügler; Carl O Wirsen; Georg Fuchs; Craig D Taylor; Stefan M Sievert
Journal:  J Bacteriol       Date:  2005-05       Impact factor: 3.490

6.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  The Pfam protein families database.

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Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

8.  Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans.

Authors:  Stefan M Sievert; Kathleen M Scott; Martin G Klotz; Patrick S G Chain; Loren J Hauser; James Hemp; Michael Hügler; Miriam Land; Alla Lapidus; Frank W Larimer; Susan Lucas; Stephanie A Malfatti; Folker Meyer; Ian T Paulsen; Qinghu Ren; Jörg Simon
Journal:  Appl Environ Microbiol       Date:  2007-12-07       Impact factor: 4.792

9.  The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Authors:  F Meyer; D Paarmann; M D'Souza; R Olson; E M Glass; M Kubal; T Paczian; A Rodriguez; R Stevens; A Wilke; J Wilkening; R A Edwards
Journal:  BMC Bioinformatics       Date:  2008-09-19       Impact factor: 3.169

10.  MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.

Authors:  Hideki Noguchi; Takeaki Taniguchi; Takehiko Itoh
Journal:  DNA Res       Date:  2008-10-21       Impact factor: 4.458
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  10 in total

1.  Pan-genome analyses identify lineage- and niche-specific markers of evolution and adaptation in Epsilonproteobacteria.

Authors:  Ying Zhang; Stefan M Sievert
Journal:  Front Microbiol       Date:  2014-03-19       Impact factor: 5.640

2.  Genomes of two new ammonia-oxidizing archaea enriched from deep marine sediments.

Authors:  Soo-Je Park; Rohit Ghai; Ana-Belén Martín-Cuadrado; Francisco Rodríguez-Valera; Won-Hyong Chung; KaeKyoung Kwon; Jung-Hyun Lee; Eugene L Madsen; Sung-Keun Rhee
Journal:  PLoS One       Date:  2014-05-05       Impact factor: 3.240

3.  Hidden diversity revealed by genome-resolved metagenomics of iron-oxidizing microbial mats from Lō'ihi Seamount, Hawai'i.

Authors:  Heather Fullerton; Kevin W Hager; Sean M McAllister; Craig L Moyer
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4.  Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism.

Authors:  Elias Broman; Johanna Sjöstedt; Jarone Pinhassi; Mark Dopson
Journal:  Microbiome       Date:  2017-08-09       Impact factor: 14.650

5.  Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents.

Authors:  Rika E Anderson; Julie Reveillaud; Emily Reddington; Tom O Delmont; A Murat Eren; Jill M McDermott; Jeff S Seewald; Julie A Huber
Journal:  Nat Commun       Date:  2017-10-24       Impact factor: 14.919

6.  Parameters Governing the Community Structure and Element Turnover in Kermadec Volcanic Ash and Hydrothermal Fluids as Monitored by Inorganic Electron Donor Consumption, Autotrophic CO2 Fixation and 16S Tags of the Transcriptome in Incubation Experiments.

Authors:  Stefanie Böhnke; Katharina Sass; Giorgio Gonnella; Alexander Diehl; Charlotte Kleint; Wolfgang Bach; Rebecca Zitoun; Andrea Koschinsky; Daniela Indenbirken; Sylvia G Sander; Stefan Kurtz; Mirjam Perner
Journal:  Front Microbiol       Date:  2019-10-09       Impact factor: 5.640

7.  Genomic Evidence for Formate Metabolism by Chloroflexi as the Key to Unlocking Deep Carbon in Lost City Microbial Ecosystems.

Authors:  Julia M McGonigle; Susan Q Lang; William J Brazelton
Journal:  Appl Environ Microbiol       Date:  2020-04-01       Impact factor: 4.792

8.  Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids.

Authors:  Nancy H Akerman; David A Butterfield; Julie A Huber
Journal:  Front Microbiol       Date:  2013-07-08       Impact factor: 5.640

Review 9.  The globally widespread genus Sulfurimonas: versatile energy metabolisms and adaptations to redox clines.

Authors:  Yuchen Han; Mirjam Perner
Journal:  Front Microbiol       Date:  2015-09-16       Impact factor: 5.640

10.  Complete genome sequence of the sulfur-oxidizing chemolithoautotrophic Sulfurovum lithotrophicum 42BKTT.

Authors:  Wooyoung Jeon; Lia Priscilla; Gyuyeon Park; Heeseok Lee; Narae Lee; Dongyup Lee; Hyuksung Kwon; Iksung Ahn; Changha Lee; Hongweon Lee; Jungoh Ahn
Journal:  Stand Genomic Sci       Date:  2017-09-06
  10 in total

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