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Literature DB >> 22815442

Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the island of Miyake, Japan.

Reiko Fujimura¹, Yoshinori Sato, Tomoyasu Nishizawa, Kenshiro Oshima, Seok-Won Kim, Masahira Hattori, Takashi Kamijo, Hiroyuki Ohta.

Abstract

A diazotrophic, acidophilic, iron-oxidizing bacterium, Leptospirillum ferrooxidans, known to be difficult to cultivate, was isolated from a fresh volcanic ash deposit on the island of Miyake, Japan. Here, we report the complete genome sequence of a cultured strain, C2-3.

Entities: Chemical Species

Mesh：

Substances：
DNA, Bacterial
Iron

Year: 2012 PMID： 22815442 PMCID： PMC3416516 DOI： 10.1128/JB.00696-12

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

11 in total

1. Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes.

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3. Nitrogenase activity (acetylene reduction) of an iron-oxidizing leptospirillum strain cultured as a pioneer microbe from a recent volcanic deposit on miyake-jima, Japan.

Authors: Yoshinori Sato; Ken Hosokawa; Reiko Fujimura; Tomoyasu Nishizawa; Takashi Kamijo; Hiroyuki Ohta
Journal: Microbes Environ Date: 2009 Impact factor: 2.912

Review 4. Nitrogen fixation in acidophile iron-oxidizing bacteria: the nif regulon of Leptospirillum ferrooxidans.

Authors: Víctor Parro; Mercedes Moreno-Paz
Journal: Res Microbiol Date: 2004-11 Impact factor: 3.992

5. Automated finishing with autofinish.

Authors: D Gordon; C Desmarais; P Green
Journal: Genome Res Date: 2001-04 Impact factor: 9.043

6. Analysis of early bacterial communities on volcanic deposits on the island of Miyake (Miyake-jima), Japan: a 6-year study at a fixed site.

Authors: Reiko Fujimura; Yoshinori Sato; Tomoyasu Nishizawa; Kenji Nanba; Kenshiro Oshima; Masahira Hattori; Takashi Kamijo; Hiroyuki Ohta
Journal: Microbes Environ Date: 2011-11-10 Impact factor: 2.912

7. MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.

Authors: Hideki Noguchi; Takeaki Taniguchi; Takehiko Itoh
Journal: DNA Res Date: 2008-10-21 Impact factor: 4.458

8. Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations.

Authors: Gloria Levicán; Juan A Ugalde; Nicole Ehrenfeld; Alejandro Maass; Pilar Parada
Journal: BMC Genomics Date: 2008-12-03 Impact factor: 3.969

9. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors: Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal: Nucleic Acids Res Date: 2007-04-22 Impact factor: 16.971

10. GenomeMatcher: a graphical user interface for DNA sequence comparison.

Authors: Yoshiyuki Ohtsubo; Wakako Ikeda-Ohtsubo; Yuji Nagata; Masataka Tsuda
Journal: BMC Bioinformatics Date: 2008-09-16 Impact factor: 3.169

20 in total

1. New group in the Leptospirillum clade: cultivation-independent community genomics, proteomics, and transcriptomics of the new species "Leptospirillum group IV UBA BS".

Authors: Daniela S Aliaga Goltsman; Mauna Dasari; Brian C Thomas; Manesh B Shah; Nathan C VerBerkmoes; Robert L Hettich; Jillian F Banfield
Journal: Appl Environ Microbiol Date: 2013-05-03 Impact factor: 4.792

2. Insights into Adaptive Mechanisms of Extreme Acidophiles Based on Quorum Sensing/Quenching-Related Proteins.

Authors: Shanshan Huang; Xueduan Liu; Weiyi Yang; Liyuan Ma; Huiying Li; Rui Liu; Jingxuan Qiu; Yiran Li
Journal: mSystems Date: 2022-04-11 Impact factor: 7.324

Review 3. Microbial diversity and metabolic networks in acid mine drainage habitats.

Authors: Celia Méndez-García; Ana I Peláez; Victoria Mesa; Jesús Sánchez; Olga V Golyshina; Manuel Ferrer
Journal: Front Microbiol Date: 2015-05-29 Impact factor: 5.640

4. Pan-genome analyses identify lineage- and niche-specific markers of evolution and adaptation in Epsilonproteobacteria.

Authors: Ying Zhang; Stefan M Sievert
Journal: Front Microbiol Date: 2014-03-19 Impact factor: 5.640

5. Depth-dependent geochemical and microbiological gradients in Fe(III) deposits resulting from coal mine-derived acid mine drainage.

Authors: Justin S Brantner; Zachary J Haake; John E Burwick; Christopher M Menge; Shane T Hotchkiss; John M Senko
Journal: Front Microbiol Date: 2014-05-14 Impact factor: 5.640

6. Draft Genome Sequence of the Betaproteobacterial Endosymbiont Associated with the Fungus Mortierella elongata FMR23-6.

Authors: Reiko Fujimura; Ayumu Nishimura; Shoko Ohshima; Yoshinori Sato; Tomoyasu Nishizawa; Kenshiro Oshima; Masahira Hattori; Kazuhiko Narisawa; Hiroyuki Ohta
Journal: Genome Announc Date: 2014-12-11

7. Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus "Ferrovum".

Authors: Sophie R Ullrich; Anja Poehlein; Judith S Tischler; Carolina González; Francisco J Ossandon; Rolf Daniel; David S Holmes; Michael Schlömann; Martin Mühling
Journal: PLoS One Date: 2016-01-25 Impact factor: 3.240