Literature DB >> 22810238

Structural and functional characterization of NikO, an enolpyruvyl transferase essential in nikkomycin biosynthesis.

Gustav Oberdorfer1, Alexandra Binter, Cristian Ginj, Peter Macheroux, Karl Gruber.   

Abstract

Nikkomycins are peptide-nucleoside compounds with fungicidal, acaricidal, and insecticidal properties because of their strong inhibition of chitin synthase. Thus, they are potential antibiotics especially for the treatment of immunosuppressed patients, for those undergoing chemotherapy, or after organ transplants. Although their chemical structure has been known for more than 30 years, only little is known about their complex biosynthesis. The genes encoding for proteins involved in the biosynthesis of the nucleoside moiety of nikkomycins are co-transcribed in the same operon, comprising the genes nikIJKLMNO. The gene product NikO was shown to belong to the family of enolpyruvyl transferases and to catalyze the transfer of an enolpyruvyl moiety from phosphoenolpyruvate to the 3'-hydroxyl group of UMP. Here, we report activity and inhibition studies of the wild-type enzyme and the variants C130A and D342A. The x-ray crystal structure revealed differences between NikO and its homologs. Furthermore, our studies led to conclusions concerning substrate binding and preference as well as to conclusions about inhibition/alkylation by the antibiotic fosfomycin.

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Year:  2012        PMID: 22810238      PMCID: PMC3438971          DOI: 10.1074/jbc.M112.352096

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  45 in total

1.  Structural basis for the interaction of the fluorescence probe 8-anilino-1-naphthalene sulfonate (ANS) with the antibiotic target MurA.

Authors:  E Schonbrunn; S Eschenburg; K Luger; W Kabsch; N Amrhein
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

2.  Formation of beta-hydroxy histidine in the biosynthesis of nikkomycin antibiotics.

Authors:  Huawei Chen; Brian K Hubbard; Sarah E O'Connor; Christopher T Walsh
Journal:  Chem Biol       Date:  2002-01

3.  Molecular characterization of co-transcribed genes from Streptomyces tendae Tü901 involved in the biosynthesis of the peptidyl moiety of the peptidyl nucleoside antibiotic nikkomycin.

Authors:  C Bruntner; B Lauer; W Schwarz; V Möhrle; C Bormann
Journal:  Mol Gen Genet       Date:  1999-08

4.  Thermodynamic characterization of ligand-induced conformational changes in UDP-N-acetylglucosamine enolpyruvyl transferase.

Authors:  A K Samland; I Jelesarov; R Kuhn; N Amrhein; P Macheroux
Journal:  Biochemistry       Date:  2001-08-21       Impact factor: 3.162

5.  Molecular characterization of co-transcribed genes from Streptomyces tendae Tü901 involved in the biosynthesis of the peptidyl moiety and assembly of the peptidyl nucleoside antibiotic nikkomycin.

Authors:  B Lauer; R Russwurm; W Schwarz; A Kálmánczhelyi; C Bruntner; A Rosemeier; C Bormann
Journal:  Mol Gen Genet       Date:  2001-01

6.  Comparative X-ray analysis of the un-liganded fosfomycin-target murA.

Authors:  S Eschenburg; E Schönbrunn
Journal:  Proteins       Date:  2000-08-01

7.  Lysine 22 in UDP-N-acetylglucosamine enolpyruvyl transferase from Enterobacter cloacae is crucial for enzymatic activity and the formation of covalent adducts with the substrate phosphoenolpyruvate and the antibiotic fosfomycin.

Authors:  A K Samland; N Amrhein; P Macheroux
Journal:  Biochemistry       Date:  1999-10-05       Impact factor: 3.162

8.  Role of the loop containing residue 115 in the induced-fit mechanism of the bacterial cell wall biosynthetic enzyme MurA.

Authors:  E Schönbrunn; S Eschenburg; F Krekel; K Luger; N Amrhein
Journal:  Biochemistry       Date:  2000-03-07       Impact factor: 3.162

9.  A putative enolpyruvyl transferase gene involved in nikkomycin biosynthesis.

Authors:  B Lauer; R Süssmuth; D Kaiser; G Jung; C Bormann
Journal:  J Antibiot (Tokyo)       Date:  2000-04       Impact factor: 2.649

10.  Interaction of the herbicide glyphosate with its target enzyme 5-enolpyruvylshikimate 3-phosphate synthase in atomic detail.

Authors:  E Schönbrunn; S Eschenburg; W A Shuttleworth; J V Schloss; N Amrhein; J N Evans; W Kabsch
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

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  5 in total

Review 1.  The biosynthesis of nitrogen-, sulfur-, and high-carbon chain-containing sugars.

Authors:  Chia-I Lin; Reid M McCarty; Hung-wen Liu
Journal:  Chem Soc Rev       Date:  2013-01-25       Impact factor: 54.564

Review 2.  Identification and characterization of enzymes involved in the biosynthesis of pyrimidine nucleoside antibiotics.

Authors:  M McErlean; X Liu; Z Cui; B Gust; S G Van Lanen
Journal:  Nat Prod Rep       Date:  2021-07-21       Impact factor: 15.111

3.  Carbon extension in peptidylnucleoside biosynthesis by radical SAM enzymes.

Authors:  Edward A Lilla; Kenichi Yokoyama
Journal:  Nat Chem Biol       Date:  2016-09-19       Impact factor: 15.040

Review 4.  Pyruvate Substitutions on Glycoconjugates.

Authors:  Fiona F Hager; Leander Sützl; Cordula Stefanović; Markus Blaukopf; Christina Schäffer
Journal:  Int J Mol Sci       Date:  2019-10-05       Impact factor: 6.208

5.  Conserved Mechanism of 2'-Phosphorylation-Aided Amide Ligation in Peptidyl Nucleoside Biosynthesis.

Authors:  Matthew M Draelos; Anyarat Thanapipatsiri; Kenichi Yokoyama
Journal:  Biochemistry       Date:  2021-07-09       Impact factor: 3.321

  5 in total

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