Literature DB >> 22809392

CIDeR: multifactorial interaction networks in human diseases.

Martin Lechner, Veit Höhn, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, Corinna Montrone, Gabi Kastenmüller, Brigitte Waegele, Andreas Ruepp.   

Abstract

The pathobiology of common diseases is influenced by heterogeneous factors interacting in complex networks. CIDeR http://mips.helmholtz-muenchen.de/cider/ is a publicly available, manually curated, integrative database of metabolic and neurological disorders. The resource provides structured information on 18,813 experimentally validated interactions between molecules, bioprocesses and environmental factors extracted from the scientific literature. Systematic annotation and interactive graphical representation of disease networks make CIDeR a versatile knowledge base for biologists, analysis of large-scale data and systems biology approaches.

Entities:  

Mesh：

Year:  2012        PMID： 22809392      PMCID： PMC3491383          DOI： 10.1186/gb-2012-13-7-r62

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  38 in total

1.  The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

Authors:  M Hucka; A Finney; H M Sauro; H Bolouri; J C Doyle; H Kitano; A P Arkin; B J Bornstein; D Bray; A Cornish-Bowden; A A Cuellar; S Dronov; E D Gilles; M Ginkel; V Gor; I I Goryanin; W J Hedley; T C Hodgman; J-H Hofmeyr; P J Hunter; N S Juty; J L Kasberger; A Kremling; U Kummer; N Le Novère; L M Loew; D Lucio; P Mendes; E Minch; E D Mjolsness; Y Nakayama; M R Nelson; P F Nielsen; T Sakurada; J C Schaff; B E Shapiro; T S Shimizu; H D Spence; J Stelling; K Takahashi; M Tomita; J Wagner; J Wang
Journal:  Bioinformatics       Date:  2003-03-01       Impact factor: 6.937

Review 2.  Computational systems biology.

Authors:  Hiroaki Kitano
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

3.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

4.  Diabetes mellitus and the risk of dementia: The Rotterdam Study.

Authors:  A Ott; R P Stolk; F van Harskamp; H A Pols; A Hofman; M M Breteler
Journal:  Neurology       Date:  1999-12-10       Impact factor: 9.910

Review 5.  Text mining for metabolic pathways, signaling cascades, and protein networks.

Authors:  Robert Hoffmann; Martin Krallinger; Eduardo Andres; Javier Tamames; Christian Blaschke; Alfonso Valencia
Journal:  Sci STKE       Date:  2005-05-10

6.  Using process diagrams for the graphical representation of biological networks.

Authors:  Hiroaki Kitano; Akira Funahashi; Yukiko Matsuoka; Kanae Oda
Journal:  Nat Biotechnol       Date:  2005-08       Impact factor: 54.908

7.  The effect of common genetic variation in 11β-hydroxysteroid dehydrogenase type 1 on hypothalamic-pituitary-adrenal axis activity and incident depression.

Authors:  M J H J Dekker; H Tiemeier; H J Luijendijk; M Kuningas; A Hofman; F H de Jong; P M Stewart; J W Koper; S W J Lamberts
Journal:  J Clin Endocrinol Metab       Date:  2011-11-23       Impact factor: 5.958

Review 8.  Metabolic syndrome and robustness tradeoffs.

Authors:  Hiroaki Kitano; Kanae Oda; Tomomi Kimura; Yukiko Matsuoka; Marie Csete; John Doyle; Masaaki Muramatsu
Journal:  Diabetes       Date:  2004-12       Impact factor: 9.461

9.  Increased gray matter volume in lithium-treated bipolar disorder patients.

Authors:  Roberto B Sassi; Mark Nicoletti; Paolo Brambilla; Alan G Mallinger; Ellen Frank; David J Kupfer; Matcheri S Keshavan; Jair C Soares
Journal:  Neurosci Lett       Date:  2002-08-30       Impact factor: 3.046

10.  Glucocorticoid-related genetic susceptibility for Alzheimer's disease.

Authors:  Dominique J-F de Quervain; Raphael Poirier; M Axel Wollmer; Luigi M E Grimaldi; Magdalini Tsolaki; Johannes R Streffer; Christoph Hock; Roger M Nitsch; M Hasan Mohajeri; Andreas Papassotiropoulos
Journal:  Hum Mol Genet       Date:  2003-10-28       Impact factor: 6.150
View more
  11 in total

1.  Improvement of myocardial infarction risk prediction via inflammation-associated metabolite biomarkers.

Authors:  Cavin K Ward-Caviness; Tao Xu; Thor Aspelund; Barbara Thorand; Corinna Montrone; Christa Meisinger; Irmtraud Dunger-Kaltenbach; Astrid Zierer; Zhonghao Yu; Inga R Helgadottir; Tamara B Harris; Lenore J Launer; Andrea Ganna; Lars Lind; Gudny Eiriksdottir; Melanie Waldenberger; Cornelia Prehn; Karsten Suhre; Thomas Illig; Jerzy Adamski; Andreas Ruepp; Wolfgang Koenig; Vilmundur Gudnason; Valur Emilsson; Rui Wang-Sattler; Annette Peters
Journal:  Heart       Date:  2017-03-02       Impact factor: 5.994

2.  Activation of HERV-K(HML-2) disrupts cortical patterning and neuronal differentiation by increasing NTRK3.

Authors:  Vidya Padmanabhan Nair; Hengyuan Liu; Gabriele Ciceri; Johannes Jungverdorben; Goar Frishman; Jason Tchieu; Gustav Y Cederquist; Ina Rothenaigner; Kenji Schorpp; Lena Klepper; Ryan M Walsh; Tae Wan Kim; Daniela Cornacchia; Andreas Ruepp; Jens Mayer; Kamyar Hadian; Dmitrij Frishman; Lorenz Studer; Michelle Vincendeau
Journal:  Cell Stem Cell       Date:  2021-05-04       Impact factor: 25.269

3.  Genetic Differences in the Immediate Transcriptome Response to Stress Predict Risk-Related Brain Function and Psychiatric Disorders.

Authors:  Janine Arloth; Ryan Bogdan; Peter Weber; Goar Frishman; Andreas Menke; Klaus V Wagner; Georgia Balsevich; Mathias V Schmidt; Nazanin Karbalai; Darina Czamara; Andre Altmann; Dietrich Trümbach; Wolfgang Wurst; Divya Mehta; Manfred Uhr; Torsten Klengel; Angelika Erhardt; Caitlin E Carey; Emily Drabant Conley; Andreas Ruepp; Bertram Müller-Myhsok; Ahmad R Hariri; Elisabeth B Binder
Journal:  Neuron       Date:  2015-06-03       Impact factor: 17.173

4.  DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis.

Authors:  Joseph J Nalluri; Bhanu K Kamapantula; Debmalya Barh; Neha Jain; Antaripa Bhattacharya; Sintia Silva de Almeida; Rommel Thiago Juca Ramos; Artur Silva; Vasco Azevedo; Preetam Ghosh
Journal:  BMC Genomics       Date:  2015-05-26       Impact factor: 3.969

5.  Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies.

Authors:  Eduardo Pérez-Palma; Bernabé I Bustos; Camilo F Villamán; Marcelo A Alarcón; Miguel E Avila; Giorgia D Ugarte; Ariel E Reyes; Carlos Opazo; Giancarlo V De Ferrari
Journal:  PLoS One       Date:  2014-04-22       Impact factor: 3.240

6.  HSC-explorer: a curated database for hematopoietic stem cells.

Authors:  Corinna Montrone; Konstantinos D Kokkaliaris; Dirk Loeffler; Martin Lechner; Gabi Kastenmüller; Timm Schroeder; Andreas Ruepp
Journal:  PLoS One       Date:  2013-07-30       Impact factor: 3.240

7.  HoPaCI-DB: host-Pseudomonas and Coxiella interaction database.

Authors:  Sophie Bleves; Irmtraud Dunger; Mathias C Walter; Dimitrios Frangoulidis; Gabi Kastenmüller; Romé Voulhoux; Andreas Ruepp
Journal:  Nucleic Acids Res       Date:  2013-10-16       Impact factor: 16.971

8.  VNP: Interactive Visual Network Pharmacology of Diseases, Targets, and Drugs.

Authors:  Q-N Hu; Z Deng; W Tu; X Yang; Z-B Meng; Z-X Deng; J Liu
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2014-03-12

9.  Genetic Spectrum of Idiopathic Restrictive Cardiomyopathy Uncovered by Next-Generation Sequencing.

Authors:  Anna Kostareva; Artem Kiselev; Alexandra Gudkova; Goar Frishman; Andreas Ruepp; Dmitrij Frishman; Natalia Smolina; Svetlana Tarnovskaya; Daniel Nilsson; Anna Zlotina; Tatiana Khodyuchenko; Tatiana Vershinina; Tatiana Pervunina; Alexandra Klyushina; Andrey Kozlenok; Gunnar Sjoberg; Irina Golovljova; Thomas Sejersen; Eugeniy Shlyakhto
Journal:  PLoS One       Date:  2016-09-23       Impact factor: 3.240

10.  PhenoDis: a comprehensive database for phenotypic characterization of rare cardiac diseases.

Authors:  Angela Adler; Pia Kirchmeier; Julian Reinhard; Barbara Brauner; Irmtraud Dunger; Gisela Fobo; Goar Frishman; Corinna Montrone; H-Werner Mewes; Matthias Arnold; Andreas Ruepp
Journal:  Orphanet J Rare Dis       Date:  2018-01-25       Impact factor: 4.123
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.