Literature DB >> 22807889

Bis{4-[(3,5-dimethyl-1H-pyrazol-4-yl)selan-yl]-3,5-dimethyl-1H-pyrazol-2-ium} chloride monohydrate.

Maksym Seredyuk, Vadim A Pavlenko, Kateryna O Znovjyak, Elzbieta Gumienna-Kontecka, Larysa Penkova.   

Abstract

In the title compound, 2C(10)H(15)N(4)Se(+)·Cl(-)·OH(-), a singly protonated mol-ecule of the organic selenide participates in hydrogen bonding with neighboring mol-ecules, forming zigzag chains along [001]. The molecule adapts a cis bridging mode with a C-Se-C angle of 102.13 (15)°. π-π stacking inter-actions are observed between the closest pyrazole rings of neighboring chains [centroid-centroid distance = 3.888 (1) Å] and hydrogen bonding occurs through bridging chloride anions and hydroxide groups. Additionally, O-H⋯Cl hydrogen bonds are formed.

Entities:  

Year:  2012        PMID: 22807889      PMCID: PMC3393332          DOI: 10.1107/S1600536812025640

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and applications of related pyrazoles, see: Krämer & Fritsky (2000 ▶); Fritsky et al. (2004 ▶); Kovbasyuk et al. (2004 ▶); Sachse et al. (2008 ▶); Penkova et al. (2009 ▶8). For structural studies of related bis­(1H-pyrazol-4-yl)selenides, see: Seredyuk et al. (2010a ▶). For structural studies of d-metal complexes of bis­(3,5-dimethyl-1H-pyrazol-4-yl)selenide, see: Seredyuk et al. (2007 ▶, 2009 ▶, 2010b ▶).

Experimental

Crystal data

2C10H15N4Se+·Cl−·HO− M = 592.90 Monoclinic, a = 22.805 (2) Å b = 8.8154 (8) Å c = 16.7462 (15) Å β = 131.448 (7)° V = 2523.4 (5) Å3 Z = 4 Mo Kα radiation μ = 3.07 mm−1 T = 100 K 0.25 × 0.20 × 0.12 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.488, T max = 0.698 7656 measured reflections 2926 independent reflections 2211 reflections with I > 2σ(I) R int = 0.087

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.107 S = 1.01 2926 reflections 160 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.15 e Å−3 Δρmin = −0.72 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812025640/rk2354sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025640/rk2354Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812025640/rk2354Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536812025640/rk2354Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C10H15N4Se+·Cl·HOF(000) = 1200
Mr = 592.90Dx = 1.561 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3236 reflections
a = 22.805 (2) Åθ = 3.3–28.3°
b = 8.8154 (8) ŵ = 3.07 mm1
c = 16.7462 (15) ÅT = 100 K
β = 131.448 (7)°Block, colourless
V = 2523.4 (5) Å30.25 × 0.20 × 0.12 mm
Z = 4
Bruker SMART APEXII CCD diffractometer2926 independent reflections
Radiation source: fine-focus sealed tube2211 reflections with I > 2σ(I)
Flat graphite crystal monochromatorRint = 0.087
Detector resolution: 16 pixels mm-1θmax = 28.5°, θmin = 3.3°
φ– and ω–scansh = −30→30
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −11→9
Tmin = 0.488, Tmax = 0.698l = −21→21
7656 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0538P)2] where P = (Fo2 + 2Fc2)/3
2926 reflections(Δ/σ)max = 0.001
160 parametersΔρmax = 1.15 e Å3
0 restraintsΔρmin = −0.72 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Se10.77024 (2)0.12139 (4)0.23905 (3)0.01783 (13)
Cl10.50000.43772 (14)0.25000.0219 (3)
O11.00000.5786 (4)0.25000.0268 (9)
H1O1.00000.66250.25000.040*
N10.86540 (17)0.4303 (3)0.1726 (2)0.0181 (7)
H1N10.89710.47660.17980.027*
N20.78857 (17)0.4481 (3)0.0854 (2)0.0161 (6)
N30.73588 (18)0.3657 (3)0.4133 (2)0.0198 (7)
N40.66123 (19)0.3412 (4)0.3203 (3)0.0205 (7)
C10.9500 (2)0.2805 (4)0.3390 (3)0.0252 (9)
H1A0.97600.21740.32400.038*
H1B0.94300.22500.38150.038*
H1C0.98110.36910.37720.038*
C20.8718 (2)0.3275 (4)0.2366 (3)0.0169 (7)
C30.7966 (2)0.2779 (4)0.1888 (3)0.0151 (7)
C40.7459 (2)0.3561 (4)0.0927 (3)0.0155 (7)
C50.6585 (2)0.3489 (4)0.0064 (3)0.0240 (9)
H5A0.63490.40600.02770.036*
H5B0.64170.2451−0.00550.036*
H5C0.64290.3909−0.05810.036*
C60.8690 (2)0.3080 (5)0.4851 (3)0.0251 (9)
H6A0.88300.35570.54720.038*
H6B0.88960.36600.46000.038*
H6C0.89020.20720.50270.038*
C70.7813 (2)0.3004 (4)0.3993 (3)0.0173 (7)
C80.7356 (2)0.2344 (4)0.2981 (3)0.0160 (7)
C90.6587 (2)0.2626 (4)0.2498 (3)0.0182 (8)
C100.5831 (2)0.2243 (4)0.1410 (3)0.0263 (9)
H10A0.54550.19250.14630.039*
H10B0.59160.14390.11110.039*
H10C0.56380.31220.09610.039*
H1N40.629 (3)0.372 (5)0.319 (4)0.032 (14)*
H1N20.769 (2)0.513 (5)0.021 (4)0.037 (12)*
U11U22U33U12U13U23
Se10.0250 (2)0.01211 (19)0.0227 (2)0.00254 (15)0.01847 (18)0.00275 (15)
Cl10.0164 (6)0.0200 (6)0.0282 (7)0.0000.0143 (6)0.000
O10.029 (2)0.0157 (18)0.024 (2)0.0000.0128 (19)0.000
N10.0165 (15)0.0195 (15)0.0183 (16)0.0001 (12)0.0115 (14)0.0006 (13)
N20.0172 (15)0.0167 (15)0.0171 (16)−0.0006 (12)0.0125 (14)0.0005 (13)
N30.0199 (15)0.0247 (17)0.0175 (16)0.0062 (13)0.0135 (14)0.0053 (13)
N40.0179 (16)0.0260 (18)0.0220 (18)0.0056 (13)0.0151 (16)0.0079 (14)
C10.0207 (19)0.031 (2)0.022 (2)0.0051 (16)0.0131 (18)0.0058 (17)
C20.0171 (18)0.0192 (17)0.0178 (19)0.0003 (14)0.0129 (16)−0.0024 (15)
C30.0181 (18)0.0131 (16)0.0177 (19)0.0009 (14)0.0134 (16)0.0007 (14)
C40.0212 (18)0.0115 (17)0.0172 (18)0.0001 (14)0.0142 (17)−0.0010 (13)
C50.023 (2)0.023 (2)0.022 (2)−0.0016 (16)0.0137 (18)0.0037 (16)
C60.023 (2)0.033 (2)0.018 (2)0.0052 (17)0.0126 (18)0.0010 (17)
C70.0185 (18)0.0176 (18)0.0202 (19)0.0046 (14)0.0147 (16)0.0070 (15)
C80.0215 (18)0.0144 (17)0.0195 (18)0.0054 (14)0.0167 (17)0.0076 (14)
C90.0216 (18)0.0177 (18)0.023 (2)0.0004 (14)0.0178 (18)0.0035 (15)
C100.021 (2)0.031 (2)0.028 (2)−0.0020 (17)0.0162 (19)0.0033 (18)
Se1—C81.904 (4)C2—C31.398 (5)
Se1—C31.908 (3)C3—C41.393 (5)
O1—H1O0.7393C4—C51.500 (5)
N1—C21.336 (5)C5—H5A0.9600
N1—N21.356 (4)C5—H5B0.9600
N1—H1N10.7666C5—H5C0.9600
N2—C41.333 (4)C6—C71.504 (5)
N2—H1N21.03 (5)C6—H6A0.9600
N3—C71.333 (4)C6—H6B0.9600
N3—N41.363 (4)C6—H6C0.9600
N4—C91.338 (5)C7—C81.400 (5)
N4—H1N40.77 (4)C8—C91.384 (5)
C1—C21.498 (5)C9—C101.499 (5)
C1—H1A0.9600C10—H10A0.9600
C1—H1B0.9600C10—H10B0.9600
C1—H1C0.9600C10—H10C0.9600
C8—Se1—C3102.13 (15)C4—C5—H5B109.5
C2—N1—N2108.6 (3)H5A—C5—H5B109.5
C2—N1—H1N1130.1C4—C5—H5C109.5
N2—N1—H1N1121.3H5A—C5—H5C109.5
C4—N2—N1109.4 (3)H5B—C5—H5C109.5
C4—N2—H1N2127 (2)C7—C6—H6A109.5
N1—N2—H1N2124 (2)C7—C6—H6B109.5
C7—N3—N4105.0 (3)H6A—C6—H6B109.5
C9—N4—N3112.4 (3)C7—C6—H6C109.5
C9—N4—H1N4132 (4)H6A—C6—H6C109.5
N3—N4—H1N4115 (4)H6B—C6—H6C109.5
C2—C1—H1A109.5N3—C7—C8110.5 (3)
C2—C1—H1B109.5N3—C7—C6120.6 (3)
H1A—C1—H1B109.5C8—C7—C6128.9 (3)
C2—C1—H1C109.5C9—C8—C7105.7 (3)
H1A—C1—H1C109.5C9—C8—Se1126.3 (3)
H1B—C1—H1C109.5C7—C8—Se1127.9 (3)
N1—C2—C3108.2 (3)N4—C9—C8106.3 (3)
N1—C2—C1121.4 (3)N4—C9—C10122.1 (3)
C3—C2—C1130.4 (3)C8—C9—C10131.5 (3)
C4—C3—C2105.8 (3)C9—C10—H10A109.5
C4—C3—Se1127.2 (3)C9—C10—H10B109.5
C2—C3—Se1126.8 (3)H10A—C10—H10B109.5
N2—C4—C3108.0 (3)C9—C10—H10C109.5
N2—C4—C5121.5 (3)H10A—C10—H10C109.5
C3—C4—C5130.5 (3)H10B—C10—H10C109.5
C4—C5—H5A109.5
C2—N1—N2—C4−0.7 (4)Se1—C3—C4—C54.3 (6)
C7—N3—N4—C90.4 (4)N4—N3—C7—C8−0.2 (4)
N2—N1—C2—C30.0 (4)N4—N3—C7—C6178.2 (3)
N2—N1—C2—C1178.8 (3)N3—C7—C8—C9−0.1 (4)
N1—C2—C3—C40.7 (4)C6—C7—C8—C9−178.3 (4)
C1—C2—C3—C4−178.0 (4)N3—C7—C8—Se1−177.7 (2)
N1—C2—C3—Se1175.3 (3)C6—C7—C8—Se14.1 (6)
C1—C2—C3—Se1−3.3 (6)C3—Se1—C8—C999.9 (3)
C8—Se1—C3—C4−82.7 (3)C3—Se1—C8—C7−83.0 (3)
C8—Se1—C3—C2103.8 (3)N3—N4—C9—C8−0.5 (4)
N1—N2—C4—C31.1 (4)N3—N4—C9—C10−178.8 (3)
N1—N2—C4—C5−178.9 (3)C7—C8—C9—N40.3 (4)
C2—C3—C4—N2−1.1 (4)Se1—C8—C9—N4178.0 (3)
Se1—C3—C4—N2−175.7 (2)C7—C8—C9—C10178.5 (4)
C2—C3—C4—C5178.9 (4)Se1—C8—C9—C10−3.9 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O10.772.012.747 (3)161
N4—H1N4···Cl10.77 (4)2.42 (5)3.146 (3)160 (5)
O1—H1O···Cl1i0.742.433.166 (4)180
N2—H1N2···N3ii1.03 (5)1.78 (5)2.804 (4)177 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O1W 0.772.012.747 (3)161
N4—H1N4⋯Cl10.77 (4)2.42 (5)3.146 (3)160 (5)
O1—H1O⋯Cl1i 0.742.433.166 (4)180
N2—H1N2⋯N3ii 1.03 (5)1.78 (5)2.804 (4)177 (4)

Symmetry codes: (i) ; (ii) .

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