| Literature DB >> 22807889 |
Maksym Seredyuk, Vadim A Pavlenko, Kateryna O Znovjyak, Elzbieta Gumienna-Kontecka, Larysa Penkova.
Abstract
In the title compound, 2C(10)H(15)N(4)Se(+)·Cl(-)·OH(-), a singly protonated mol-ecule of the organic selenide participates in hydrogen bonding with neighboring mol-ecules, forming zigzag chains along [001]. The molecule adapts a cis bridging mode with a C-Se-C angle of 102.13 (15)°. π-π stacking inter-actions are observed between the closest pyrazole rings of neighboring chains [centroid-centroid distance = 3.888 (1) Å] and hydrogen bonding occurs through bridging chloride anions and hydroxide groups. Additionally, O-H⋯Cl hydrogen bonds are formed.Entities:
Year: 2012 PMID: 22807889 PMCID: PMC3393332 DOI: 10.1107/S1600536812025640
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C10H15N4Se+·Cl−·HO− | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 3236 reflections |
| θ = 3.3–28.3° | |
| µ = 3.07 mm−1 | |
| β = 131.448 (7)° | Block, colourless |
| 0.25 × 0.20 × 0.12 mm | |
| Bruker SMART APEXII CCD diffractometer | 2926 independent reflections |
| Radiation source: fine-focus sealed tube | 2211 reflections with |
| Flat graphite crystal monochromator | |
| Detector resolution: 16 pixels mm-1 | θmax = 28.5°, θmin = 3.3° |
| φ– and ω–scans | |
| Absorption correction: multi-scan ( | |
| 7656 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2926 reflections | (Δ/σ)max = 0.001 |
| 160 parameters | Δρmax = 1.15 e Å−3 |
| 0 restraints | Δρmin = −0.72 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Se1 | 0.77024 (2) | 0.12139 (4) | 0.23905 (3) | 0.01783 (13) | |
| Cl1 | 0.5000 | 0.43772 (14) | 0.2500 | 0.0219 (3) | |
| O1 | 1.0000 | 0.5786 (4) | 0.2500 | 0.0268 (9) | |
| H1O | 1.0000 | 0.6625 | 0.2500 | 0.040* | |
| N1 | 0.86540 (17) | 0.4303 (3) | 0.1726 (2) | 0.0181 (7) | |
| H1N1 | 0.8971 | 0.4766 | 0.1798 | 0.027* | |
| N2 | 0.78857 (17) | 0.4481 (3) | 0.0854 (2) | 0.0161 (6) | |
| N3 | 0.73588 (18) | 0.3657 (3) | 0.4133 (2) | 0.0198 (7) | |
| N4 | 0.66123 (19) | 0.3412 (4) | 0.3203 (3) | 0.0205 (7) | |
| C1 | 0.9500 (2) | 0.2805 (4) | 0.3390 (3) | 0.0252 (9) | |
| H1A | 0.9760 | 0.2174 | 0.3240 | 0.038* | |
| H1B | 0.9430 | 0.2250 | 0.3815 | 0.038* | |
| H1C | 0.9811 | 0.3691 | 0.3772 | 0.038* | |
| C2 | 0.8718 (2) | 0.3275 (4) | 0.2366 (3) | 0.0169 (7) | |
| C3 | 0.7966 (2) | 0.2779 (4) | 0.1888 (3) | 0.0151 (7) | |
| C4 | 0.7459 (2) | 0.3561 (4) | 0.0927 (3) | 0.0155 (7) | |
| C5 | 0.6585 (2) | 0.3489 (4) | 0.0064 (3) | 0.0240 (9) | |
| H5A | 0.6349 | 0.4060 | 0.0277 | 0.036* | |
| H5B | 0.6417 | 0.2451 | −0.0055 | 0.036* | |
| H5C | 0.6429 | 0.3909 | −0.0581 | 0.036* | |
| C6 | 0.8690 (2) | 0.3080 (5) | 0.4851 (3) | 0.0251 (9) | |
| H6A | 0.8830 | 0.3557 | 0.5472 | 0.038* | |
| H6B | 0.8896 | 0.3660 | 0.4600 | 0.038* | |
| H6C | 0.8902 | 0.2072 | 0.5027 | 0.038* | |
| C7 | 0.7813 (2) | 0.3004 (4) | 0.3993 (3) | 0.0173 (7) | |
| C8 | 0.7356 (2) | 0.2344 (4) | 0.2981 (3) | 0.0160 (7) | |
| C9 | 0.6587 (2) | 0.2626 (4) | 0.2498 (3) | 0.0182 (8) | |
| C10 | 0.5831 (2) | 0.2243 (4) | 0.1410 (3) | 0.0263 (9) | |
| H10A | 0.5455 | 0.1925 | 0.1463 | 0.039* | |
| H10B | 0.5916 | 0.1439 | 0.1111 | 0.039* | |
| H10C | 0.5638 | 0.3122 | 0.0961 | 0.039* | |
| H1N4 | 0.629 (3) | 0.372 (5) | 0.319 (4) | 0.032 (14)* | |
| H1N2 | 0.769 (2) | 0.513 (5) | 0.021 (4) | 0.037 (12)* |
| Se1 | 0.0250 (2) | 0.01211 (19) | 0.0227 (2) | 0.00254 (15) | 0.01847 (18) | 0.00275 (15) |
| Cl1 | 0.0164 (6) | 0.0200 (6) | 0.0282 (7) | 0.000 | 0.0143 (6) | 0.000 |
| O1 | 0.029 (2) | 0.0157 (18) | 0.024 (2) | 0.000 | 0.0128 (19) | 0.000 |
| N1 | 0.0165 (15) | 0.0195 (15) | 0.0183 (16) | 0.0001 (12) | 0.0115 (14) | 0.0006 (13) |
| N2 | 0.0172 (15) | 0.0167 (15) | 0.0171 (16) | −0.0006 (12) | 0.0125 (14) | 0.0005 (13) |
| N3 | 0.0199 (15) | 0.0247 (17) | 0.0175 (16) | 0.0062 (13) | 0.0135 (14) | 0.0053 (13) |
| N4 | 0.0179 (16) | 0.0260 (18) | 0.0220 (18) | 0.0056 (13) | 0.0151 (16) | 0.0079 (14) |
| C1 | 0.0207 (19) | 0.031 (2) | 0.022 (2) | 0.0051 (16) | 0.0131 (18) | 0.0058 (17) |
| C2 | 0.0171 (18) | 0.0192 (17) | 0.0178 (19) | 0.0003 (14) | 0.0129 (16) | −0.0024 (15) |
| C3 | 0.0181 (18) | 0.0131 (16) | 0.0177 (19) | 0.0009 (14) | 0.0134 (16) | 0.0007 (14) |
| C4 | 0.0212 (18) | 0.0115 (17) | 0.0172 (18) | 0.0001 (14) | 0.0142 (17) | −0.0010 (13) |
| C5 | 0.023 (2) | 0.023 (2) | 0.022 (2) | −0.0016 (16) | 0.0137 (18) | 0.0037 (16) |
| C6 | 0.023 (2) | 0.033 (2) | 0.018 (2) | 0.0052 (17) | 0.0126 (18) | 0.0010 (17) |
| C7 | 0.0185 (18) | 0.0176 (18) | 0.0202 (19) | 0.0046 (14) | 0.0147 (16) | 0.0070 (15) |
| C8 | 0.0215 (18) | 0.0144 (17) | 0.0195 (18) | 0.0054 (14) | 0.0167 (17) | 0.0076 (14) |
| C9 | 0.0216 (18) | 0.0177 (18) | 0.023 (2) | 0.0004 (14) | 0.0178 (18) | 0.0035 (15) |
| C10 | 0.021 (2) | 0.031 (2) | 0.028 (2) | −0.0020 (17) | 0.0162 (19) | 0.0033 (18) |
| Se1—C8 | 1.904 (4) | C2—C3 | 1.398 (5) |
| Se1—C3 | 1.908 (3) | C3—C4 | 1.393 (5) |
| O1—H1O | 0.7393 | C4—C5 | 1.500 (5) |
| N1—C2 | 1.336 (5) | C5—H5A | 0.9600 |
| N1—N2 | 1.356 (4) | C5—H5B | 0.9600 |
| N1—H1N1 | 0.7666 | C5—H5C | 0.9600 |
| N2—C4 | 1.333 (4) | C6—C7 | 1.504 (5) |
| N2—H1N2 | 1.03 (5) | C6—H6A | 0.9600 |
| N3—C7 | 1.333 (4) | C6—H6B | 0.9600 |
| N3—N4 | 1.363 (4) | C6—H6C | 0.9600 |
| N4—C9 | 1.338 (5) | C7—C8 | 1.400 (5) |
| N4—H1N4 | 0.77 (4) | C8—C9 | 1.384 (5) |
| C1—C2 | 1.498 (5) | C9—C10 | 1.499 (5) |
| C1—H1A | 0.9600 | C10—H10A | 0.9600 |
| C1—H1B | 0.9600 | C10—H10B | 0.9600 |
| C1—H1C | 0.9600 | C10—H10C | 0.9600 |
| C8—Se1—C3 | 102.13 (15) | C4—C5—H5B | 109.5 |
| C2—N1—N2 | 108.6 (3) | H5A—C5—H5B | 109.5 |
| C2—N1—H1N1 | 130.1 | C4—C5—H5C | 109.5 |
| N2—N1—H1N1 | 121.3 | H5A—C5—H5C | 109.5 |
| C4—N2—N1 | 109.4 (3) | H5B—C5—H5C | 109.5 |
| C4—N2—H1N2 | 127 (2) | C7—C6—H6A | 109.5 |
| N1—N2—H1N2 | 124 (2) | C7—C6—H6B | 109.5 |
| C7—N3—N4 | 105.0 (3) | H6A—C6—H6B | 109.5 |
| C9—N4—N3 | 112.4 (3) | C7—C6—H6C | 109.5 |
| C9—N4—H1N4 | 132 (4) | H6A—C6—H6C | 109.5 |
| N3—N4—H1N4 | 115 (4) | H6B—C6—H6C | 109.5 |
| C2—C1—H1A | 109.5 | N3—C7—C8 | 110.5 (3) |
| C2—C1—H1B | 109.5 | N3—C7—C6 | 120.6 (3) |
| H1A—C1—H1B | 109.5 | C8—C7—C6 | 128.9 (3) |
| C2—C1—H1C | 109.5 | C9—C8—C7 | 105.7 (3) |
| H1A—C1—H1C | 109.5 | C9—C8—Se1 | 126.3 (3) |
| H1B—C1—H1C | 109.5 | C7—C8—Se1 | 127.9 (3) |
| N1—C2—C3 | 108.2 (3) | N4—C9—C8 | 106.3 (3) |
| N1—C2—C1 | 121.4 (3) | N4—C9—C10 | 122.1 (3) |
| C3—C2—C1 | 130.4 (3) | C8—C9—C10 | 131.5 (3) |
| C4—C3—C2 | 105.8 (3) | C9—C10—H10A | 109.5 |
| C4—C3—Se1 | 127.2 (3) | C9—C10—H10B | 109.5 |
| C2—C3—Se1 | 126.8 (3) | H10A—C10—H10B | 109.5 |
| N2—C4—C3 | 108.0 (3) | C9—C10—H10C | 109.5 |
| N2—C4—C5 | 121.5 (3) | H10A—C10—H10C | 109.5 |
| C3—C4—C5 | 130.5 (3) | H10B—C10—H10C | 109.5 |
| C4—C5—H5A | 109.5 | ||
| C2—N1—N2—C4 | −0.7 (4) | Se1—C3—C4—C5 | 4.3 (6) |
| C7—N3—N4—C9 | 0.4 (4) | N4—N3—C7—C8 | −0.2 (4) |
| N2—N1—C2—C3 | 0.0 (4) | N4—N3—C7—C6 | 178.2 (3) |
| N2—N1—C2—C1 | 178.8 (3) | N3—C7—C8—C9 | −0.1 (4) |
| N1—C2—C3—C4 | 0.7 (4) | C6—C7—C8—C9 | −178.3 (4) |
| C1—C2—C3—C4 | −178.0 (4) | N3—C7—C8—Se1 | −177.7 (2) |
| N1—C2—C3—Se1 | 175.3 (3) | C6—C7—C8—Se1 | 4.1 (6) |
| C1—C2—C3—Se1 | −3.3 (6) | C3—Se1—C8—C9 | 99.9 (3) |
| C8—Se1—C3—C4 | −82.7 (3) | C3—Se1—C8—C7 | −83.0 (3) |
| C8—Se1—C3—C2 | 103.8 (3) | N3—N4—C9—C8 | −0.5 (4) |
| N1—N2—C4—C3 | 1.1 (4) | N3—N4—C9—C10 | −178.8 (3) |
| N1—N2—C4—C5 | −178.9 (3) | C7—C8—C9—N4 | 0.3 (4) |
| C2—C3—C4—N2 | −1.1 (4) | Se1—C8—C9—N4 | 178.0 (3) |
| Se1—C3—C4—N2 | −175.7 (2) | C7—C8—C9—C10 | 178.5 (4) |
| C2—C3—C4—C5 | 178.9 (4) | Se1—C8—C9—C10 | −3.9 (6) |
| H··· | ||||
| N1—H1 | 0.77 | 2.01 | 2.747 (3) | 161 |
| N4—H1 | 0.77 (4) | 2.42 (5) | 3.146 (3) | 160 (5) |
| O1—H1 | 0.74 | 2.43 | 3.166 (4) | 180 |
| N2—H1 | 1.03 (5) | 1.78 (5) | 2.804 (4) | 177 (4) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.77 | 2.01 | 2.747 (3) | 161 |
| N4—H1 | 0.77 (4) | 2.42 (5) | 3.146 (3) | 160 (5) |
| O1—H1 | 0.74 | 2.43 | 3.166 (4) | 180 |
| N2—H1 | 1.03 (5) | 1.78 (5) | 2.804 (4) | 177 (4) |
Symmetry codes: (i) ; (ii) .