Literature DB >> 22807888

3-(1-Benzofuran-2-yl)-1H-1,2,4-triazole-5(4H)-thione monohydrate.

Hoong-Kun Fun, Suhana Arshad, Balakrishna Kalluraya, Shobhitha Shetty.   

Abstract

In the title hydrate, C(10)H(7)N(3)OS·H(2)O, the essentially planar benzofuran [maximum deviation = 0.006 (1) Å] and 4,5-dihydro-1H-1,2,4-triazole [maximum deviation = 0.007 (1) Å] rings form a dihedral angle of 11.67 (6)°. In the crystal, O-H⋯N, O-H⋯S, N-H⋯O and N-H⋯S hydrogen bonds link the mol-ecules into sheets lying parallel to the bc plane. Aromatic π-π stacking inter-actions [centroid-centroid distances = 3.5078 (8)-3.6113 (8) Å] are also observed.

Entities:  

Year:  2012        PMID: 22807888      PMCID: PMC3393331          DOI: 10.1107/S1600536812025305

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 1,2,4-triazoles, see: Shujuan et al. (2004 ▶); Clemons et al. (2004 ▶); Johnston (2002 ▶); Wei et al. (2007 ▶). For related structures, see: Jing et al. (2012 ▶); Fun et al. (2011 ▶); Abdel-Aziz et al. (2011 ▶). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H7N3OS·H2O M = 235.26 Monoclinic, a = 7.1446 (1) Å b = 8.8075 (1) Å c = 17.3274 (2) Å β = 111.942 (1)° V = 1011.36 (2) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 100 K 0.39 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.891, T max = 0.955 19917 measured reflections 4162 independent reflections 3347 reflections with > I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.108 S = 1.07 4162 reflections 153 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.61 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812025305/hb6837sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025305/hb6837Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812025305/hb6837Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H7N3OS·H2OF(000) = 488
Mr = 235.26Dx = 1.545 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6273 reflections
a = 7.1446 (1) Åθ = 2.5–33.4°
b = 8.8075 (1) ŵ = 0.31 mm1
c = 17.3274 (2) ÅT = 100 K
β = 111.942 (1)°Block, yellow
V = 1011.36 (2) Å30.39 × 0.20 × 0.15 mm
Z = 4
Bruker SMART APEXII CCD diffractometer4162 independent reflections
Radiation source: fine-focus sealed tube3347 reflections with > I > 2σ(I)
Graphite monochromatorRint = 0.039
φ and ω scansθmax = 34.2°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.891, Tmax = 0.955k = −13→13
19917 measured reflectionsl = −26→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0491P)2 + 0.4347P] where P = (Fo2 + 2Fc2)/3
4162 reflections(Δ/σ)max = 0.001
153 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.31 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.16013 (5)−0.27662 (3)0.789110 (18)0.01410 (8)
O10.76589 (13)0.12211 (10)0.53014 (5)0.01383 (17)
N11.01801 (16)−0.33637 (12)0.62307 (6)0.01333 (19)
N20.91410 (16)−0.27263 (11)0.54676 (6)0.01371 (19)
N30.95013 (15)−0.11026 (11)0.64872 (6)0.01228 (18)
C11.04179 (18)−0.24126 (13)0.68643 (7)0.0121 (2)
C20.87285 (17)−0.13492 (13)0.56444 (7)0.0120 (2)
C30.76153 (17)−0.02501 (13)0.50237 (7)0.0122 (2)
C40.65217 (18)−0.03918 (13)0.41967 (7)0.0139 (2)
H4A0.6284−0.12770.38820.017*
C50.58061 (17)0.11092 (14)0.39077 (7)0.0134 (2)
C60.46309 (19)0.17499 (15)0.31360 (8)0.0169 (2)
H6A0.41260.11570.26580.020*
C70.42492 (19)0.32943 (16)0.31110 (8)0.0185 (2)
H7A0.34740.37410.26060.022*
C80.5000 (2)0.42034 (15)0.38265 (9)0.0193 (2)
H8A0.47100.52360.37840.023*
C90.6168 (2)0.35953 (14)0.45977 (8)0.0175 (2)
H9A0.66750.41890.50750.021*
C100.65281 (18)0.20498 (13)0.46092 (7)0.0128 (2)
O1W0.12342 (14)0.13102 (10)0.11923 (6)0.01697 (18)
H1OW0.08270.16770.06730.025*
H2OW0.05380.18100.13830.025*
H1N11.062 (3)−0.433 (2)0.6261 (12)0.032 (5)*
H1N30.933 (3)−0.032 (2)0.6736 (11)0.016 (4)*
U11U22U33U12U13U23
S10.01807 (14)0.01305 (13)0.00963 (13)0.00052 (9)0.00341 (10)0.00123 (9)
O10.0168 (4)0.0119 (4)0.0113 (4)0.0021 (3)0.0035 (3)−0.0001 (3)
N10.0172 (5)0.0122 (4)0.0099 (4)0.0022 (3)0.0043 (3)0.0014 (3)
N20.0167 (5)0.0130 (4)0.0103 (4)0.0017 (3)0.0038 (3)0.0009 (3)
N30.0158 (4)0.0110 (4)0.0098 (4)0.0021 (3)0.0044 (3)0.0005 (3)
C10.0137 (5)0.0112 (4)0.0118 (5)0.0005 (4)0.0051 (4)0.0013 (4)
C20.0132 (5)0.0126 (5)0.0100 (5)0.0005 (4)0.0040 (4)0.0004 (4)
C30.0130 (5)0.0121 (5)0.0108 (5)0.0008 (4)0.0036 (4)0.0007 (4)
C40.0152 (5)0.0132 (5)0.0115 (5)0.0006 (4)0.0027 (4)−0.0001 (4)
C50.0123 (5)0.0159 (5)0.0113 (5)0.0007 (4)0.0038 (4)0.0024 (4)
C60.0156 (5)0.0214 (6)0.0120 (5)0.0006 (4)0.0030 (4)0.0029 (4)
C70.0153 (5)0.0224 (6)0.0168 (6)0.0041 (4)0.0049 (4)0.0085 (5)
C80.0187 (5)0.0166 (5)0.0236 (6)0.0048 (4)0.0090 (5)0.0061 (5)
C90.0200 (6)0.0147 (5)0.0182 (6)0.0029 (4)0.0077 (4)0.0010 (4)
C100.0134 (5)0.0135 (5)0.0108 (5)0.0018 (4)0.0037 (4)0.0026 (4)
O1W0.0225 (4)0.0144 (4)0.0136 (4)0.0006 (3)0.0064 (3)0.0009 (3)
S1—C11.6892 (12)C4—H4A0.9300
O1—C101.3784 (14)C5—C101.4003 (17)
O1—C31.3785 (14)C5—C61.4045 (17)
N1—C11.3403 (16)C6—C71.3848 (19)
N1—N21.3715 (14)C6—H6A0.9300
N1—H1N10.90 (2)C7—C81.403 (2)
N2—C21.3112 (15)C7—H7A0.9300
N3—C11.3664 (15)C8—C91.3914 (18)
N3—C21.3718 (15)C8—H8A0.9300
N3—H1N30.844 (18)C9—C101.3840 (17)
C2—C31.4448 (16)C9—H9A0.9300
C3—C41.3575 (16)O1W—H1OW0.8961
C4—C51.4382 (16)O1W—H2OW0.8208
C10—O1—C3105.34 (9)C10—C5—C6118.94 (11)
C1—N1—N2113.03 (10)C10—C5—C4105.90 (10)
C1—N1—H1N1127.4 (13)C6—C5—C4135.16 (12)
N2—N1—H1N1119.6 (13)C7—C6—C5117.72 (12)
C2—N2—N1103.96 (10)C7—C6—H6A121.1
C1—N3—C2107.80 (10)C5—C6—H6A121.1
C1—N3—H1N3125.3 (12)C6—C7—C8121.81 (12)
C2—N3—H1N3126.5 (12)C6—C7—H7A119.1
N1—C1—N3104.16 (10)C8—C7—H7A119.1
N1—C1—S1127.44 (9)C9—C8—C7121.54 (12)
N3—C1—S1128.40 (9)C9—C8—H8A119.2
N2—C2—N3111.04 (10)C7—C8—H8A119.2
N2—C2—C3123.72 (11)C10—C9—C8115.71 (12)
N3—C2—C3125.24 (10)C10—C9—H9A122.1
C4—C3—O1112.58 (10)C8—C9—H9A122.1
C4—C3—C2131.59 (11)O1—C10—C9125.35 (11)
O1—C3—C2115.82 (10)O1—C10—C5110.37 (10)
C3—C4—C5105.81 (10)C9—C10—C5124.28 (11)
C3—C4—H4A127.1H1OW—O1W—H2OW101.1
C5—C4—H4A127.1
C1—N1—N2—C2−0.29 (14)C2—C3—C4—C5−178.79 (12)
N2—N1—C1—N3−0.49 (13)C3—C4—C5—C10−0.85 (13)
N2—N1—C1—S1179.94 (9)C3—C4—C5—C6179.54 (14)
C2—N3—C1—N11.06 (13)C10—C5—C6—C70.09 (18)
C2—N3—C1—S1−179.38 (9)C4—C5—C6—C7179.66 (13)
N1—N2—C2—N30.98 (13)C5—C6—C7—C80.00 (19)
N1—N2—C2—C3−179.39 (11)C6—C7—C8—C90.0 (2)
C1—N3—C2—N2−1.34 (14)C7—C8—C9—C10−0.17 (19)
C1—N3—C2—C3179.04 (11)C3—O1—C10—C9−179.75 (12)
C10—O1—C3—C40.01 (13)C3—O1—C10—C5−0.58 (13)
C10—O1—C3—C2179.45 (10)C8—C9—C10—O1179.33 (11)
N2—C2—C3—C411.6 (2)C8—C9—C10—C50.28 (19)
N3—C2—C3—C4−168.79 (13)C6—C5—C10—O1−179.42 (10)
N2—C2—C3—O1−167.68 (11)C4—C5—C10—O10.90 (13)
N3—C2—C3—O111.90 (17)C6—C5—C10—C9−0.24 (19)
O1—C3—C4—C50.54 (14)C4—C5—C10—C9−179.92 (12)
D—H···AD—HH···AD···AD—H···A
O1W—H1OW···N2i0.902.052.9135 (14)160
O1W—H2OW···S1ii0.822.463.2674 (11)167
N1—H1N1···O1Wiii0.90 (2)1.81 (2)2.7100 (14)172.6 (19)
N3—H1N3···S1iv0.846 (18)2.498 (18)3.3242 (10)165.7 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1OW⋯N2i 0.902.052.9135 (14)160
O1W—H2OW⋯S1ii 0.822.463.2674 (11)167
N1—H1N1⋯O1W iii 0.90 (2)1.81 (2)2.7100 (14)172.6 (19)
N3—H1N3⋯S1iv 0.846 (18)2.498 (18)3.3242 (10)165.7 (16)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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