Literature DB >> 22807874

(2-tert-Butyl-5-hy-droxy-methyl-1,3-dioxan-5-yl)methanol.

Berenice Vargas, Amelia Olivas, Gerardo Aguirre, Domingo Madrigal.   

Abstract

In the title compound, C(10)H(20)O(4), the dioxane ring adopts a chair conformation. The tert-butyl group occupies an equatorial position, and is staggered with respect to the O atoms of the dioxane ring. In the crystal, mol-ecules are connected by O-H⋯O hydrogen-bonds into zigzag chains of R(4) (4)(8) and R(2) (2)(12) ring motifs that run parallel to the a axis.

Entities:  

Year:  2012        PMID: 22807874      PMCID: PMC3393317          DOI: 10.1107/S160053681202541X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on the synthesis and properties of 1,3-dioxanes, see: Anderson (1967 ▶); Bailey et al. (1978 ▶); Juaristi et al. (1987 ▶, 1989 ▶); Vázquez-Hernández et al. (2004 ▶). For the crystal structure of a similar compound, see: Zhang et al. (2010 ▶).

Experimental

Crystal data

C10H20O4 M = 204.26 Triclinic, a = 5.8337 (10) Å b = 6.1408 (9) Å c = 17.941 (3) Å α = 81.468 (12)° β = 87.335 (14)° γ = 62.606 (13)° V = 564.16 (15) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.73 × 0.63 × 0.20 mm

Data collection

Siemens P4 diffractometer Absorption correction: empirical (using intensity measurements) (XEMP in SHELXTL; Sheldrick, 2008 ▶) T min = 0.335, T max = 0.466 3581 measured reflections 3283 independent reflections 2593 reflections with I > 2σ(I) R int = 0.013 3 standard reflections every 97 reflections intensity decay: 5.8%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.193 S = 1.42 3283 reflections 127 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.29 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202541X/pk2419sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202541X/pk2419Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202541X/pk2419Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H20O4Z = 2
Mr = 204.26F(000) = 224
Triclinic, P1Dx = 1.202 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8337 (10) ÅCell parameters from 52 reflections
b = 6.1408 (9) Åθ = 5.6–12.5°
c = 17.941 (3) ŵ = 0.09 mm1
α = 81.468 (12)°T = 298 K
β = 87.335 (14)°Prismatic, colorless
γ = 62.606 (13)°0.73 × 0.63 × 0.20 mm
V = 564.16 (15) Å3
Siemens P4 diffractometer2593 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.013
Graphite monochromatorθmax = 30.0°, θmin = 2.3°
2θ/ω scansh = 0→8
Absorption correction: empirical (using intensity measurements) (XEMP in SHELXTL; Sheldrick, 2008)k = −7→8
Tmin = 0.335, Tmax = 0.466l = −25→25
3581 measured reflections3 standard reflections every 97 reflections
3283 independent reflections intensity decay: 5.8%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.193H-atom parameters constrained
S = 1.42w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
3283 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.19141 (17)0.04289 (16)0.28059 (4)0.0416 (2)
O2−0.01630 (17)−0.14442 (16)0.22771 (4)0.0413 (2)
O3−0.31024 (19)0.4084 (2)0.08767 (6)0.0652 (4)
H3A−0.27240.47740.05000.098*
O40.2736 (2)0.3620 (2)0.05181 (5)0.0572 (3)
H4A0.41380.33930.06750.086*
C10.1581 (2)−0.1720 (2)0.28510 (6)0.0374 (3)
H1A0.3254−0.31440.27930.045*
C20.2949 (2)0.0938 (2)0.21038 (6)0.0422 (3)
H2A0.4652−0.04140.20510.051*
H2B0.31250.24370.20950.051*
C30.1194 (2)0.12605 (19)0.14454 (6)0.0336 (2)
C40.0755 (3)−0.1038 (2)0.15426 (6)0.0439 (3)
H4B−0.0495−0.08290.11650.053*
H4C0.2363−0.24770.14660.053*
C50.0515 (2)−0.2160 (2)0.36206 (6)0.0417 (3)
C6−0.2078 (3)0.0058 (3)0.37302 (8)0.0546 (3)
H6A−0.32920.02780.33470.082*
H6B−0.18520.15230.36940.082*
H6C−0.2717−0.02340.42180.082*
C70.2463 (3)−0.2507 (3)0.42305 (8)0.0663 (4)
H7A0.2672−0.10330.41960.099*
H7B0.4096−0.38870.41580.099*
H7C0.1839−0.28160.47190.099*
C80.0168 (4)−0.4500 (3)0.36665 (10)0.0688 (5)
H8A−0.1058−0.42630.32850.103*
H8B−0.0452−0.48240.41540.103*
H8C0.1796−0.58810.35890.103*
C100.2505 (3)0.1391 (3)0.06975 (7)0.0467 (3)
H10A0.4212−0.00140.07200.056*
H10B0.15170.12730.02990.056*
C9−0.1367 (2)0.3603 (2)0.14803 (7)0.0433 (3)
H9A−0.21770.34270.19540.052*
H9B−0.10200.50090.14680.052*
U11U22U33U12U13U23
O10.0540 (5)0.0534 (5)0.0310 (4)−0.0366 (4)−0.0015 (3)−0.0038 (3)
O20.0566 (5)0.0497 (5)0.0326 (4)−0.0369 (4)0.0046 (3)−0.0080 (3)
O30.0482 (5)0.0904 (8)0.0554 (6)−0.0377 (5)−0.0154 (4)0.0201 (5)
O40.0621 (6)0.0766 (7)0.0491 (5)−0.0501 (5)−0.0003 (4)0.0073 (4)
C10.0408 (5)0.0386 (5)0.0343 (5)−0.0200 (4)0.0022 (4)−0.0036 (4)
C20.0432 (6)0.0585 (7)0.0354 (5)−0.0339 (5)−0.0020 (4)0.0003 (5)
C30.0378 (5)0.0412 (5)0.0294 (5)−0.0245 (4)0.0032 (4)−0.0053 (4)
C40.0638 (7)0.0475 (6)0.0339 (5)−0.0357 (6)0.0066 (5)−0.0119 (4)
C50.0498 (6)0.0455 (6)0.0339 (5)−0.0264 (5)0.0042 (4)−0.0027 (4)
C60.0543 (7)0.0636 (8)0.0489 (7)−0.0281 (6)0.0139 (6)−0.0168 (6)
C70.0694 (9)0.0933 (12)0.0373 (6)−0.0425 (9)−0.0085 (6)0.0083 (7)
C80.1062 (13)0.0573 (8)0.0570 (8)−0.0518 (9)0.0223 (8)−0.0066 (6)
C100.0540 (7)0.0600 (7)0.0355 (5)−0.0345 (6)0.0090 (5)−0.0076 (5)
C90.0411 (6)0.0465 (6)0.0426 (6)−0.0218 (5)0.0004 (5)−0.0012 (4)
O1—C11.4100 (13)C4—H4C0.9700
O1—C21.4266 (13)C5—C61.529 (2)
O2—C11.4181 (14)C5—C81.5307 (19)
O2—C41.4301 (13)C5—C71.5356 (19)
O3—C91.4204 (15)C6—H6A0.9600
O3—H3A0.8200C6—H6B0.9600
O4—C101.4248 (16)C6—H6C0.9600
O4—H4A0.8200C7—H7A0.9600
C1—C51.5267 (15)C7—H7B0.9600
C1—H1A0.9800C7—H7C0.9600
C2—C31.5297 (15)C8—H8A0.9600
C2—H2A0.9700C8—H8B0.9600
C2—H2B0.9700C8—H8C0.9600
C3—C101.5235 (15)C10—H10A0.9700
C3—C91.5314 (16)C10—H10B0.9700
C3—C41.5309 (15)C9—H9A0.9700
C4—H4B0.9700C9—H9B0.9700
C1—O1—C2112.27 (8)C6—C5—C7109.52 (12)
C1—O2—C4111.54 (9)C8—C5—C7110.10 (12)
C9—O3—H3A109.5C5—C6—H6A109.5
C10—O4—H4A109.5C5—C6—H6B109.5
O1—C1—O2110.58 (8)H6A—C6—H6B109.5
O1—C1—C5109.07 (9)C5—C6—H6C109.5
O2—C1—C5109.32 (9)H6A—C6—H6C109.5
O1—C1—H1A109.3H6B—C6—H6C109.5
O2—C1—H1A109.3C5—C7—H7A109.5
C5—C1—H1A109.3C5—C7—H7B109.5
O1—C2—C3110.78 (8)H7A—C7—H7B109.5
O1—C2—H2A109.5C5—C7—H7C109.5
C3—C2—H2A109.5H7A—C7—H7C109.5
O1—C2—H2B109.5H7B—C7—H7C109.5
C3—C2—H2B109.5C5—C8—H8A109.5
H2A—C2—H2B108.1C5—C8—H8B109.5
C10—C3—C2110.54 (9)H8A—C8—H8B109.5
C10—C3—C9111.37 (9)C5—C8—H8C109.5
C2—C3—C9108.81 (9)H8A—C8—H8C109.5
C10—C3—C4108.60 (9)H8B—C8—H8C109.5
C2—C3—C4106.80 (9)O4—C10—C3112.63 (10)
C9—C3—C4110.62 (9)O4—C10—H10A109.1
O2—C4—C3111.25 (9)C3—C10—H10A109.1
O2—C4—H4B109.4O4—C10—H10B109.1
C3—C4—H4B109.4C3—C10—H10B109.1
O2—C4—H4C109.4H10A—C10—H10B107.8
C3—C4—H4C109.4O3—C9—C3112.71 (10)
H4B—C4—H4C108.0O3—C9—H9A109.0
C1—C5—C6110.31 (10)C3—C9—H9A109.0
C1—C5—C8108.76 (10)O3—C9—H9B109.0
C6—C5—C8109.86 (12)C3—C9—H9B109.0
C1—C5—C7108.27 (10)H9A—C9—H9B107.8
C2—O1—C1—O2−60.72 (11)O1—C1—C5—C659.66 (13)
C2—O1—C1—C5179.03 (9)O2—C1—C5—C6−61.36 (12)
C4—O2—C1—O160.20 (11)O1—C1—C5—C8−179.79 (11)
C4—O2—C1—C5−179.71 (8)O2—C1—C5—C859.20 (14)
C1—O1—C2—C358.43 (12)O1—C1—C5—C7−60.16 (13)
O1—C2—C3—C10−170.96 (9)O2—C1—C5—C7178.82 (10)
O1—C2—C3—C966.45 (12)C2—C3—C10—O4−69.64 (13)
O1—C2—C3—C4−52.99 (12)C9—C3—C10—O451.45 (13)
C1—O2—C4—C3−58.05 (13)C4—C3—C10—O4173.51 (10)
C10—C3—C4—O2172.44 (9)C10—C3—C9—O356.51 (12)
C2—C3—C4—O253.21 (13)C2—C3—C9—O3178.60 (9)
C9—C3—C4—O2−65.05 (12)C4—C3—C9—O3−64.38 (12)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O4i0.821.942.7346 (14)162
O4—H4A···O3ii0.821.912.6878 (15)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯O4i 0.821.942.7346 (14)162
O4—H4A⋯O3ii 0.821.912.6878 (15)159

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Salt effects on the conformational behavior of 5-carboxy- and 5-hydroxy-1,3-dioxane.

Authors:  Maribel Vázquez-Hernández; Giselle A Rosquete-Pina; Eusebio Juaristi
Journal:  J Org Chem       Date:  2004-12-24       Impact factor: 4.354

3.  (5-n-Hexyl-2-hydroxymethyl-1,3-dioxan-2-yl)methanol.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23
  3 in total

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