Literature DB >> 22807815

1-Dichloro-acetyl-8a-methyl-1,2,3,4,6,7,8,8a-octa-hydro-pyrrolo-[1,2-a]pyrimidin-6-one.

Shuang Gao1, Li-Xia Zhao, Fei Ye, Ying Fu, Zhi-Yong Xing.   

Abstract

In the title compound, C(10)H(14)Cl(2)N(2)O(2), the five-membered ring adopts an envelope conformation (with the methylene C atom closest to the C-N bridge as the flap), while the conformation of the six-membered ring is close to a twist-boat. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming chains along the c-axis direction.

Entities:  

Year:  2012        PMID: 22807815      PMCID: PMC3393258          DOI: 10.1107/S1600536812024063

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 1,5-diaza­bicyclo compounds, see: Fuerst & Lamoureux (1992 ▶); Hutton & Bartlett (2007 ▶); Koptelov et al. (2011 ▶); Loriga et al. (2007 ▶); Moreland et al. (1993 ▶); Taylor et al. (2010 ▶). For details of the synthesis, see: Sun & Ye (2010 ▶); Rohr et al. (1984 ▶,1986 ▶). For applications of N-dichloro­acetyl-1,5-diaza­bicyclo compounds, see: Lamour­eux & Rusness (1992 ▶); Hatzios & Burgos (2004 ▶).

Experimental

Crystal data

C10H14Cl2N2O2 M = 265.13 Orthorhombic, a = 10.312 (2) Å b = 14.997 (3) Å c = 15.666 (3) Å V = 2422.7 (8) Å3 Z = 8 Mo Kα radiation μ = 0.52 mm−1 T = 293 K 0.23 × 0.19 × 0.16 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.889, T max = 0.922 22128 measured reflections 2770 independent reflections 2376 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.156 S = 1.11 2770 reflections 146 parameters H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −0.36 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1999 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024063/yk2055sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024063/yk2055Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812024063/yk2055Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H14Cl2N2O2F(000) = 1104
Mr = 265.13Dx = 1.454 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9134 reflections
a = 10.312 (2) Åθ = 3.2–27.6°
b = 14.997 (3) ŵ = 0.52 mm1
c = 15.666 (3) ÅT = 293 K
V = 2422.7 (8) Å3Block, colourless
Z = 80.23 × 0.19 × 0.16 mm
Rigaku R-AXIS RAPID diffractometer2770 independent reflections
Radiation source: fine-focus sealed tube2376 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
Detector resolution: 10 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scanh = −13→11
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −19→19
Tmin = 0.889, Tmax = 0.922l = −20→20
22128 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.097P)2 + 0.5072P] where P = (Fo2 + 2Fc2)/3
2770 reflections(Δ/σ)max = 0.001
146 parametersΔρmax = 0.74 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All s.u.'s (except the s.u.'s in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.44507 (19)0.93130 (12)0.76600 (12)0.0425 (4)
H10.40670.88550.72930.051*
C20.36708 (16)0.93818 (10)0.84965 (10)0.0356 (3)
C30.3554 (3)0.77230 (13)0.84857 (16)0.0717 (8)
H3A0.43480.74710.87120.086*
H3B0.36540.77840.78730.086*
C40.2472 (4)0.71165 (18)0.86658 (17)0.0951 (11)
H4A0.26200.65520.83800.114*
H4B0.16750.73700.84440.114*
C50.2331 (3)0.69585 (16)0.96139 (15)0.0778 (8)
H5A0.14270.68540.97530.093*
H5B0.28240.64350.97790.093*
C60.27314 (17)0.86362 (11)0.97259 (10)0.0388 (4)
C70.1334 (2)0.89612 (19)0.96606 (15)0.0643 (6)
H7A0.08490.85640.93010.096*
H7B0.13210.95500.94200.096*
H7C0.09510.89741.02190.096*
C80.3550 (2)0.91831 (13)1.03659 (11)0.0490 (5)
H8A0.44030.93061.01330.059*
H8B0.31280.97451.04970.059*
C90.3655 (2)0.86100 (14)1.11572 (12)0.0512 (5)
H9A0.45290.86261.13850.061*
H9B0.30570.88131.15940.061*
C100.33128 (18)0.76904 (13)1.08684 (12)0.0460 (4)
Cl10.60562 (5)0.89949 (5)0.79454 (4)0.0661 (2)
Cl20.44643 (7)1.03447 (4)0.71183 (3)0.0634 (2)
N10.33425 (15)0.86043 (9)0.88631 (9)0.0376 (3)
N20.28063 (18)0.77378 (10)1.00813 (10)0.0495 (4)
O10.34367 (15)1.01088 (8)0.88014 (9)0.0493 (4)
O20.34379 (18)0.69963 (12)1.12676 (10)0.0677 (5)
U11U22U33U12U13U23
C10.0509 (10)0.0420 (9)0.0347 (8)−0.0063 (7)−0.0010 (7)−0.0023 (7)
C20.0419 (8)0.0325 (8)0.0325 (8)−0.0003 (6)−0.0051 (6)−0.0013 (6)
C30.133 (2)0.0307 (9)0.0519 (12)−0.0056 (11)0.0152 (13)−0.0057 (8)
C40.177 (3)0.0556 (14)0.0523 (14)−0.0532 (18)−0.0047 (16)−0.0051 (10)
C50.132 (2)0.0500 (12)0.0517 (13)−0.0423 (14)−0.0074 (13)0.0063 (10)
C60.0463 (9)0.0384 (8)0.0318 (8)−0.0040 (7)−0.0051 (6)0.0021 (6)
C70.0486 (11)0.0909 (17)0.0534 (12)0.0083 (11)0.0025 (9)0.0066 (11)
C80.0672 (12)0.0430 (9)0.0367 (9)−0.0096 (8)−0.0075 (8)−0.0038 (7)
C90.0591 (11)0.0615 (12)0.0330 (9)−0.0038 (9)−0.0070 (8)−0.0004 (8)
C100.0472 (9)0.0549 (11)0.0359 (9)0.0012 (8)0.0030 (7)0.0098 (8)
Cl10.0494 (3)0.0859 (5)0.0629 (4)0.0085 (3)0.0054 (2)−0.0065 (3)
Cl20.0924 (5)0.0559 (4)0.0419 (3)−0.0146 (3)0.0005 (2)0.0120 (2)
N10.0490 (8)0.0311 (7)0.0328 (7)−0.0019 (5)−0.0022 (6)−0.0014 (5)
N20.0691 (10)0.0393 (8)0.0400 (8)−0.0153 (7)−0.0084 (7)0.0076 (6)
O10.0724 (9)0.0308 (6)0.0448 (7)0.0038 (6)0.0064 (6)−0.0010 (5)
O20.0858 (11)0.0644 (10)0.0528 (9)0.0071 (8)0.0007 (8)0.0255 (7)
C1—C21.541 (2)C6—N21.460 (2)
C1—Cl21.7647 (19)C6—N11.492 (2)
C1—Cl11.780 (2)C6—C71.525 (3)
C1—H10.9800C6—C81.546 (2)
C2—O11.214 (2)C7—H7A0.9600
C2—N11.343 (2)C7—H7B0.9600
C3—N11.464 (2)C7—H7C0.9600
C3—C41.467 (4)C8—C91.512 (3)
C3—H3A0.9700C8—H8A0.9700
C3—H3B0.9700C8—H8B0.9700
C4—C51.511 (4)C9—C101.494 (3)
C4—H4A0.9700C9—H9A0.9700
C4—H4B0.9700C9—H9B0.9700
C5—N21.464 (3)C10—O21.221 (2)
C5—H5A0.9700C10—N21.341 (2)
C5—H5B0.9700
C2—C1—Cl2110.76 (12)N2—C6—C8102.31 (13)
C2—C1—Cl1106.84 (12)N1—C6—C8111.95 (15)
Cl2—C1—Cl1110.39 (10)C7—C6—C8112.96 (17)
C2—C1—H1109.6C6—C7—H7A109.5
Cl2—C1—H1109.6C6—C7—H7B109.5
Cl1—C1—H1109.6H7A—C7—H7B109.5
O1—C2—N1124.12 (16)C6—C7—H7C109.5
O1—C2—C1119.90 (15)H7A—C7—H7C109.5
N1—C2—C1115.91 (14)H7B—C7—H7C109.5
N1—C3—C4111.7 (2)C9—C8—C6105.61 (15)
N1—C3—H3A109.3C9—C8—H8A110.6
C4—C3—H3A109.3C6—C8—H8A110.6
N1—C3—H3B109.3C9—C8—H8B110.6
C4—C3—H3B109.3C6—C8—H8B110.6
H3A—C3—H3B107.9H8A—C8—H8B108.7
C3—C4—C5111.1 (2)C10—C9—C8105.05 (15)
C3—C4—H4A109.4C10—C9—H9A110.7
C5—C4—H4A109.4C8—C9—H9A110.7
C3—C4—H4B109.4C10—C9—H9B110.7
C5—C4—H4B109.4C8—C9—H9B110.7
H4A—C4—H4B108.0H9A—C9—H9B108.8
N2—C5—C4109.54 (17)O2—C10—N2123.87 (19)
N2—C5—H5A109.8O2—C10—C9127.37 (19)
C4—C5—H5A109.8N2—C10—C9108.75 (15)
N2—C5—H5B109.8C2—N1—C3125.00 (15)
C4—C5—H5B109.8C2—N1—C6117.77 (13)
H5A—C5—H5B108.2C3—N1—C6117.23 (14)
N2—C6—N1107.07 (14)C10—N2—C6114.85 (15)
N2—C6—C7111.75 (17)C10—N2—C5123.23 (16)
N1—C6—C7110.41 (14)C6—N2—C5121.90 (16)
Cl2—C1—C2—O1−17.6 (2)N2—C6—N1—C2−164.27 (15)
Cl1—C1—C2—O1102.68 (17)C7—C6—N1—C273.9 (2)
Cl2—C1—C2—N1165.39 (13)C8—C6—N1—C2−52.9 (2)
Cl1—C1—C2—N1−74.34 (16)N2—C6—N1—C315.0 (2)
N1—C3—C4—C5−62.4 (4)C7—C6—N1—C3−106.9 (2)
C3—C4—C5—N228.4 (4)C8—C6—N1—C3126.3 (2)
N2—C6—C8—C9−17.3 (2)O2—C10—N2—C6179.24 (19)
N1—C6—C8—C9−131.65 (17)C9—C10—N2—C60.3 (2)
C7—C6—C8—C9103.0 (2)O2—C10—N2—C50.7 (3)
C6—C8—C9—C1017.9 (2)C9—C10—N2—C5−178.2 (2)
C8—C9—C10—O2169.3 (2)N1—C6—N2—C10128.79 (17)
C8—C9—C10—N2−11.8 (2)C7—C6—N2—C10−110.2 (2)
O1—C2—N1—C3176.6 (2)C8—C6—N2—C1010.9 (2)
C1—C2—N1—C3−6.5 (3)N1—C6—N2—C5−52.6 (3)
O1—C2—N1—C6−4.3 (3)C7—C6—N2—C568.4 (3)
C1—C2—N1—C6172.63 (14)C8—C6—N2—C5−170.5 (2)
C4—C3—N1—C2−142.1 (2)C4—C5—N2—C10−151.3 (3)
C4—C3—N1—C638.8 (3)C4—C5—N2—C630.2 (4)
D—H···AD—HH···AD···AD—H···A
C1—H1···O2i0.982.153.115 (2)168
C3—H3B···O2i0.972.553.502 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1⋯O2i 0.982.153.115 (2)168
C3—H3B⋯O2i 0.972.553.502 (3)169

Symmetry code: (i) .

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