Literature DB >> 22807810

2,2'-[2,5-Bis(hex-yloxy)-1,4-phenyl-ene]dithio-phene.

Chin Hoong Teh, Muhammad Mat Salleh, Mohamed Ibrahim Mohamed Tahir, Rusli Daik, Mohammad B Kassim.   

Abstract

The asymmetric unit of the title compound, C(26)H(34)O(2)S(2), comprises one half-mol-ecule located on an inversion centre. The thio-phene groups are twisted relative to the benzene ring, making a dihedral angle of 5.30 (7)°, and the n-hexyl groups are in a fully extended conformation. In the crystal, there are short C-H⋯π contacts involving the thio-phene groups.

Entities:  

Year:  2012        PMID: 22807810      PMCID: PMC3393253          DOI: 10.1107/S160053681202404X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and general background references, see: Carle et al. (2010 ▶); Promarak & Ruchirawat (2007 ▶); Bouachrine et al. (2002 ▶).

Experimental

Crystal data

C26H34O2S2 M = 442.65 Monoclinic, a = 12.2996 (3) Å b = 5.4298 (1) Å c = 17.6872 (4) Å β = 103.982 (2)° V = 1146.23 (4) Å3 Z = 2 Cu Kα radiation μ = 2.25 mm−1 T = 150 K 0.26 × 0.11 × 0.03 mm

Data collection

Oxford Diffraction Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006 ▶) T min = 0.592, T max = 0.935 8010 measured reflections 2216 independent reflections 2018 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.113 S = 1.04 2216 reflections 137 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202404X/gk2496sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202404X/gk2496Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202404X/gk2496Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H34O2S2F(000) = 476
Mr = 442.65Dx = 1.283 Mg m3
Monoclinic, P21/cMelting point = 369–367 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54178 Å
a = 12.2996 (3) ÅCell parameters from 3985 reflections
b = 5.4298 (1) Åθ = 4–71°
c = 17.6872 (4) ŵ = 2.25 mm1
β = 103.982 (2)°T = 150 K
V = 1146.23 (4) Å3Thin plate, colourless
Z = 20.26 × 0.11 × 0.03 mm
Oxford Diffraction Gemini diffractometer2216 independent reflections
Radiation source: fine-focus sealed tube2018 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω scansθmax = 71.3°, θmin = 3.7°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006)h = −15→14
Tmin = 0.592, Tmax = 0.935k = −6→6
8010 measured reflectionsl = −21→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0739P)2 + 0.5049P] where P = (Fo2 + 2Fc2)/3
2216 reflections(Δ/σ)max < 0.001
137 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.22 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer 1986) with a nominal stability of 0.1 K.Cosier, J. & Glazer, A.M., (1986)., J. Appl. Cryst.105 107.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.29977 (3)0.23308 (7)0.14406 (2)0.02015 (17)
O10.33781 (9)0.3460 (2)0.00566 (6)0.0185 (3)
C10.41842 (12)0.1767 (3)0.00089 (8)0.0151 (3)
C20.44944 (12)0.0140 (3)0.06456 (8)0.0146 (3)
C30.46770 (12)0.1612 (3)−0.06175 (8)0.0153 (3)
H30.44510.2703−0.10310.018*
C40.39762 (12)0.0159 (3)0.13132 (8)0.0144 (3)
C50.41723 (12)−0.1539 (3)0.19221 (8)0.0163 (3)
H50.4667−0.28560.19620.020*
C60.35315 (13)−0.1034 (3)0.24751 (9)0.0190 (3)
H60.3560−0.19900.29160.023*
C70.28728 (13)0.0999 (3)0.22898 (9)0.0205 (3)
H70.24080.15950.25920.025*
C80.30066 (12)0.5135 (3)−0.05794 (8)0.0161 (3)
H8A0.27220.4229−0.10590.019*
H8B0.36240.6160−0.06430.019*
C90.20894 (12)0.6715 (3)−0.03966 (8)0.0162 (3)
H9A0.23940.76740.00690.019*
H9B0.15040.5663−0.02940.019*
C100.15873 (13)0.8453 (3)−0.10717 (9)0.0173 (3)
H10A0.21810.9460−0.11840.021*
H10B0.12690.7482−0.15320.021*
C110.06820 (13)1.0129 (3)−0.09008 (9)0.0180 (3)
H11A0.10071.1141−0.04510.022*
H11B0.01020.9122−0.07700.022*
C120.01499 (13)1.1804 (3)−0.15839 (9)0.0206 (3)
H12A0.07321.2796−0.17180.025*
H12B−0.01821.0791−0.20320.025*
C13−0.07480 (13)1.3507 (3)−0.14123 (10)0.0237 (4)
H13A−0.13371.2538−0.12910.036*
H13B−0.10501.4511−0.18610.036*
H13C−0.04221.4544−0.09770.036*
U11U22U33U12U13U23
S10.0231 (3)0.0238 (3)0.0156 (2)0.00695 (14)0.00873 (17)0.00228 (13)
O10.0210 (6)0.0222 (6)0.0139 (5)0.0084 (4)0.0074 (4)0.0046 (4)
C10.0131 (7)0.0172 (7)0.0143 (7)0.0013 (6)0.0021 (5)−0.0007 (6)
C20.0135 (7)0.0185 (7)0.0117 (7)−0.0007 (6)0.0028 (5)−0.0012 (5)
C30.0166 (7)0.0174 (7)0.0115 (7)0.0015 (6)0.0022 (5)0.0024 (5)
C40.0126 (7)0.0175 (7)0.0124 (7)0.0002 (5)0.0016 (5)−0.0023 (5)
C50.0158 (7)0.0220 (8)0.0119 (7)−0.0011 (6)0.0049 (6)−0.0027 (6)
C60.0197 (7)0.0247 (8)0.0128 (7)−0.0018 (6)0.0042 (6)0.0007 (6)
C70.0211 (8)0.0286 (8)0.0138 (7)0.0016 (6)0.0079 (6)−0.0008 (6)
C80.0175 (7)0.0189 (7)0.0116 (7)0.0033 (6)0.0030 (5)0.0018 (5)
C90.0165 (7)0.0184 (7)0.0139 (7)0.0018 (6)0.0040 (6)−0.0001 (6)
C100.0184 (7)0.0188 (7)0.0146 (7)0.0028 (6)0.0039 (6)0.0008 (6)
C110.0188 (7)0.0181 (7)0.0170 (7)0.0019 (6)0.0041 (6)−0.0003 (6)
C120.0193 (8)0.0235 (8)0.0193 (8)0.0048 (6)0.0054 (6)0.0026 (6)
C130.0207 (8)0.0236 (8)0.0257 (8)0.0060 (6)0.0037 (6)0.0011 (7)
S1—C71.7071 (15)C8—H8A0.9700
S1—C41.7380 (15)C8—H8B0.9700
O1—C11.3697 (18)C9—C101.530 (2)
O1—C81.4326 (17)C9—H9A0.9700
C1—C31.388 (2)C9—H9B0.9700
C1—C21.409 (2)C10—C111.524 (2)
C2—C3i1.404 (2)C10—H10A0.9700
C2—C41.471 (2)C10—H10B0.9700
C3—C2i1.404 (2)C11—C121.527 (2)
C3—H30.9300C11—H11A0.9700
C4—C51.394 (2)C11—H11B0.9700
C5—C61.423 (2)C12—C131.526 (2)
C5—H50.9300C12—H12A0.9700
C6—C71.362 (2)C12—H12B0.9700
C6—H60.9300C13—H13A0.9600
C7—H70.9300C13—H13B0.9600
C8—C91.513 (2)C13—H13C0.9600
C7—S1—C492.24 (7)C8—C9—H9A109.4
C1—O1—C8118.42 (11)C10—C9—H9A109.4
O1—C1—C3123.50 (14)C8—C9—H9B109.4
O1—C1—C2115.58 (13)C10—C9—H9B109.4
C3—C1—C2120.92 (14)H9A—C9—H9B108.0
C3i—C2—C1117.07 (13)C11—C10—C9112.96 (12)
C3i—C2—C4119.49 (13)C11—C10—H10A109.0
C1—C2—C4123.42 (13)C9—C10—H10A109.0
C1—C3—C2i122.00 (14)C11—C10—H10B109.0
C1—C3—H3119.0C9—C10—H10B109.0
C2i—C3—H3119.0H10A—C10—H10B107.8
C5—C4—C2126.00 (13)C10—C11—C12113.12 (13)
C5—C4—S1110.17 (11)C10—C11—H11A109.0
C2—C4—S1123.82 (11)C12—C11—H11A109.0
C4—C5—C6112.47 (14)C10—C11—H11B109.0
C4—C5—H5123.8C12—C11—H11B109.0
C6—C5—H5123.8H11A—C11—H11B107.8
C7—C6—C5112.76 (14)C13—C12—C11113.32 (13)
C7—C6—H6123.6C13—C12—H12A108.9
C5—C6—H6123.6C11—C12—H12A108.9
C6—C7—S1112.35 (12)C13—C12—H12B108.9
C6—C7—H7123.8C11—C12—H12B108.9
S1—C7—H7123.8H12A—C12—H12B107.7
O1—C8—C9107.75 (11)C12—C13—H13A109.5
O1—C8—H8A110.2C12—C13—H13B109.5
C9—C8—H8A110.2H13A—C13—H13B109.5
O1—C8—H8B110.2C12—C13—H13C109.5
C9—C8—H8B110.2H13A—C13—H13C109.5
H8A—C8—H8B108.5H13B—C13—H13C109.5
C8—C9—C10111.36 (12)
D—H···AD—HH···AD···AD—H···A
C5—H5···Cg1ii0.932.853.5809 (16)137
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the S1, C4–C7 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5⋯Cg1i 0.932.853.5809 (16)137

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  1 in total

1.  2,2'-Bithio-phene-3,3'-dicarbonitrile.

Authors:  J Josephine Novina; G Vasuki; Durai Karthik; K R Justin Thomas
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-25
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.