Literature DB >> 22807777

{(S)-2-[({2-[1-(Anthracen-9-ylmeth-yl)pyrrolidine-2-carboxamido]-phen-yl}(phen-yl)methyl-idene)amino]-acetato(2-)-κ(4)N,N',N'',O(1)}nickel(II).

Zdeňka Padělková, Alexander Popkov, Milan Nádvorník.   

Abstract

The title compound, [Ni(C(35)H(29)N(3)O(3))], includes a Schiff base ligand derived from (S)-1-[(anthracen-9-yl)meth-yl]-N-(2-benz-oyl-phen-yl)pyrrolidine-2-carboxamide and glycine. The Ni(II) atom is coordinated by three N atoms [Ni-N = 1.937 (3), 1.850 (3) and 1.850 (3) Å] and one O atom [Ni-O = 1.859 (2) Å], resulting in a pseudo-square-planar coordination environment.

Entities:  

Year:  2012        PMID: 22807777      PMCID: PMC3393209          DOI: 10.1107/S1600536812026827

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For preparation and evaluation of similar compounds in model reactions, see: Belokon et al. (1988 ▶); Kožíšek et al. (2004 ▶); Popkov et al. (2002 ▶, 2010 ▶). For an overview of application procedures, see: Popkov et al. (2005 ▶) and works cited therein. For NMR in solutions and similar highly unusual long-range spin–spin inter­actions, see: Jirman et al. (1998 ▶); Langer et al. (2007 ▶); Popkov et al. (1998 ▶, 2003 ▶). For the review of applications in positron emission tomography (PET), see: Popkov & De Spiegeleer (2012 ▶).

Experimental

Crystal data

[Ni(C35H29N3O3)] M = 598.32 Orthorhombic, a = 8.9080 (5) Å b = 16.5249 (12) Å c = 18.6981 (13) Å V = 2752.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.75 mm−1 T = 150 K 0.31 × 0.26 × 0.14 mm

Data collection

Bruker–Nonius KappaCCD area-detector diffractometer Absorption correction: Gaussian (Coppens, 1970 ▶) T min = 0.856, T max = 0.925 23768 measured reflections 6120 independent reflections 5037 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.087 S = 1.19 6120 reflections 379 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.38 e Å−3 Absolute structure: Flack (1983 ▶), 2615 Friedel pairs Flack parameter: −0.019 (14) Data collection: COLLECT (Hooft, 1998 ▶) and DENZO (Otwin­owski & Minor, 1997 ▶); cell refinement: COLLECT and DENZO; data reduction: COLLECT and DENZO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812026827/im2378sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026827/im2378Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C35H29N3O3)]F(000) = 1248
Mr = 598.32Dx = 1.444 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 23827 reflections
a = 8.9080 (5) Åθ = 1–27.5°
b = 16.5249 (12) ŵ = 0.75 mm1
c = 18.6981 (13) ÅT = 150 K
V = 2752.4 (3) Å3Block, red
Z = 40.31 × 0.26 × 0.14 mm
Bruker–Nonius KappaCCD area-detector diffractometer6120 independent reflections
Radiation source: fine-focus sealed tube5037 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.071
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 1.6°
φ and ω scans to fill the Ewald sphereh = −11→10
Absorption correction: gaussian (Coppens, 1970)k = −19→21
Tmin = 0.856, Tmax = 0.925l = −22→24
23768 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.087w = 1/[σ2(Fo2) + (0.0124P)2 + 2.2393P] where P = (Fo2 + 2Fc2)/3
S = 1.19(Δ/σ)max = 0.001
6120 reflectionsΔρmax = 0.32 e Å3
379 parametersΔρmin = −0.38 e Å3
0 restraintsAbsolute structure: Flack (1983), 2615 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.019 (14)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.24182 (5)0.29142 (2)0.341302 (19)0.01922 (9)
O20.3360 (2)0.30227 (14)0.42952 (11)0.0254 (5)
N30.0779 (3)0.34255 (16)0.38193 (14)0.0205 (6)
N10.4180 (3)0.24291 (16)0.29833 (14)0.0210 (6)
N20.1482 (3)0.27289 (15)0.25450 (14)0.0211 (6)
O30.2972 (2)0.34356 (15)0.54199 (12)0.0308 (6)
O10.1528 (3)0.17305 (14)0.16634 (15)0.0376 (6)
C7−0.0029 (4)0.3172 (2)0.15323 (19)0.0258 (7)
H70.05460.28540.12270.031*
C14−0.2558 (4)0.36460 (18)0.43374 (16)0.0243 (6)
H14−0.24990.30850.43080.029*
C50.2084 (3)0.2090 (2)0.21725 (17)0.0246 (7)
C200.2548 (4)0.33210 (17)0.48055 (15)0.0226 (6)
C18−0.1673 (4)0.4966 (2)0.3992 (2)0.0295 (8)
H18−0.10270.52890.37260.035*
C12−0.0396 (3)0.37223 (18)0.34982 (18)0.0210 (7)
C13−0.1571 (4)0.41254 (19)0.39428 (17)0.0210 (7)
C60.0284 (4)0.3172 (2)0.22744 (18)0.0216 (7)
C210.5180 (3)0.3056 (2)0.26366 (17)0.0249 (7)
H21A0.56820.33620.30090.030*
H21B0.59470.27770.23640.030*
C40.3570 (4)0.18159 (19)0.24694 (18)0.0248 (7)
H40.42840.17330.20780.030*
C220.4380 (4)0.3641 (2)0.21447 (18)0.0258 (8)
C20.4126 (4)0.1213 (2)0.36427 (19)0.0315 (8)
H2A0.33590.13450.39920.038*
H2B0.47090.07570.38160.038*
C15−0.3628 (4)0.4004 (2)0.47780 (19)0.0300 (8)
H15−0.42900.36840.50390.036*
C11−0.0600 (4)0.36713 (19)0.27272 (17)0.0210 (7)
C9−0.2021 (4)0.4135 (2)0.16876 (19)0.0297 (8)
H9−0.27800.44520.14930.036*
C10.5114 (3)0.1935 (2)0.34910 (18)0.0258 (7)
H1A0.53310.22350.39250.031*
H1B0.60510.17710.32700.031*
C16−0.3702 (4)0.4840 (2)0.4825 (2)0.0352 (9)
H16−0.44090.50800.51230.042*
C8−0.1158 (4)0.3641 (2)0.12543 (19)0.0291 (8)
H8−0.13480.36280.07650.035*
C300.3486 (5)0.4049 (2)0.0956 (2)0.0354 (9)
C10−0.1745 (4)0.4141 (2)0.24071 (19)0.0262 (7)
H10−0.23320.44710.26970.031*
C240.3850 (5)0.4572 (2)0.3174 (2)0.0379 (10)
H240.44280.42510.34760.045*
C350.4320 (4)0.3507 (2)0.13999 (18)0.0276 (8)
C190.0938 (4)0.3502 (2)0.45967 (17)0.0264 (8)
H19A0.02650.31280.48350.032*
H19B0.06780.40470.47430.032*
C340.5118 (4)0.2865 (3)0.10405 (19)0.0364 (8)
H340.56750.25000.13100.044*
C280.2807 (4)0.4858 (2)0.1981 (2)0.0341 (9)
C230.3690 (4)0.4337 (2)0.2440 (2)0.0283 (8)
C30.3427 (4)0.1027 (2)0.2911 (2)0.0319 (8)
H3A0.23800.08770.29630.038*
H3B0.39560.05860.26790.038*
C17−0.2732 (5)0.5318 (2)0.4430 (2)0.0355 (9)
H17−0.27860.58780.44640.043*
C250.3180 (5)0.5244 (2)0.3438 (3)0.0540 (12)
H250.33410.53940.39110.065*
C330.5074 (5)0.2784 (3)0.0321 (2)0.0535 (12)
H330.56010.23630.01070.064*
C310.3485 (6)0.3928 (3)0.0199 (2)0.0557 (13)
H310.29380.4279−0.00890.067*
C290.2727 (5)0.4695 (2)0.1259 (2)0.0407 (10)
H290.21400.50250.09690.049*
C260.2233 (6)0.5723 (3)0.2992 (3)0.0592 (15)
H260.17280.61650.31830.071*
C270.2067 (4)0.5540 (2)0.2292 (3)0.0501 (12)
H270.14550.58640.20090.060*
C320.4254 (6)0.3324 (3)−0.0107 (2)0.0650 (15)
H320.42470.3262−0.06010.078*
U11U22U33U12U13U23
Ni10.02184 (17)0.02218 (17)0.01363 (16)0.0019 (2)−0.00030 (18)−0.00127 (17)
O20.0269 (11)0.0340 (14)0.0153 (11)0.0000 (11)−0.0023 (9)−0.0030 (11)
N30.0244 (14)0.0227 (14)0.0145 (14)0.0016 (11)0.0007 (11)−0.0004 (11)
N10.0241 (14)0.0218 (14)0.0170 (14)0.0009 (11)0.0001 (11)−0.0008 (11)
N20.0273 (14)0.0218 (15)0.0144 (13)0.0023 (11)−0.0034 (11)−0.0012 (11)
O30.0336 (14)0.0419 (15)0.0170 (12)−0.0017 (11)−0.0014 (9)−0.0034 (11)
O10.0482 (14)0.0312 (13)0.0334 (15)0.0079 (11)−0.0156 (13)−0.0145 (12)
C70.0321 (17)0.0277 (18)0.0176 (17)0.0001 (14)−0.0030 (15)−0.0016 (15)
C140.0232 (15)0.0272 (15)0.0225 (15)−0.0020 (17)−0.0029 (16)0.0003 (12)
C50.0318 (18)0.0224 (15)0.0197 (15)0.0027 (15)−0.0005 (12)−0.0036 (15)
C200.0284 (15)0.0231 (14)0.0162 (14)0.0000 (17)0.0001 (17)0.0004 (11)
C180.0340 (19)0.0246 (18)0.030 (2)0.0003 (16)0.0079 (16)0.0028 (16)
C120.0255 (15)0.0153 (15)0.0220 (18)−0.0023 (13)0.0019 (13)0.0014 (14)
C130.0231 (16)0.0236 (17)0.0162 (16)0.0008 (14)−0.0005 (13)0.0021 (13)
C60.0266 (17)0.0208 (17)0.0173 (17)−0.0006 (13)0.0010 (13)−0.0006 (13)
C210.0230 (16)0.032 (2)0.0196 (17)−0.0019 (15)0.0011 (12)−0.0032 (15)
C40.0278 (17)0.0281 (18)0.0184 (17)0.0051 (14)−0.0005 (14)−0.0070 (14)
C220.0250 (17)0.030 (2)0.0228 (18)−0.0053 (15)0.0019 (14)0.0034 (15)
C20.045 (2)0.0235 (19)0.026 (2)0.0072 (16)0.0020 (15)0.0050 (14)
C150.0225 (17)0.045 (2)0.0225 (19)−0.0059 (16)0.0019 (14)0.0027 (16)
C110.0227 (16)0.0197 (17)0.0206 (17)−0.0029 (13)−0.0010 (13)0.0024 (13)
C90.0333 (18)0.0305 (18)0.025 (2)0.0022 (14)−0.0065 (14)0.0060 (16)
C10.0287 (15)0.0320 (19)0.0165 (16)0.0092 (14)−0.0006 (13)−0.0007 (15)
C160.0296 (19)0.048 (2)0.028 (2)0.0051 (17)0.0049 (16)−0.0073 (18)
C80.037 (2)0.032 (2)0.0185 (17)0.0005 (16)−0.0059 (14)0.0037 (15)
C300.044 (2)0.032 (2)0.029 (2)−0.0119 (18)−0.0077 (17)0.0065 (17)
C100.0266 (17)0.0279 (18)0.0241 (19)0.0023 (14)0.0015 (14)0.0037 (15)
C240.051 (2)0.031 (2)0.032 (2)−0.0039 (18)0.0139 (18)−0.0006 (17)
C350.0278 (17)0.035 (2)0.0197 (19)−0.0051 (15)0.0012 (13)0.0035 (14)
C190.0296 (18)0.034 (2)0.0156 (17)0.0082 (15)0.0003 (13)−0.0015 (14)
C340.042 (2)0.045 (2)0.0228 (19)−0.004 (2)0.0042 (15)−0.0018 (19)
C280.030 (2)0.0249 (18)0.047 (2)−0.0092 (15)0.0032 (17)0.0067 (16)
C230.0252 (17)0.0260 (18)0.034 (2)−0.0071 (15)0.0066 (15)0.0019 (16)
C30.033 (2)0.0241 (18)0.039 (2)0.0053 (16)−0.0028 (16)−0.0011 (16)
C170.043 (2)0.0275 (17)0.037 (2)0.0073 (18)0.0062 (18)−0.0041 (15)
C250.080 (3)0.038 (2)0.043 (3)−0.004 (2)0.029 (3)−0.006 (2)
C330.070 (3)0.062 (3)0.028 (2)−0.003 (3)0.010 (2)−0.008 (2)
C310.080 (3)0.061 (3)0.025 (2)−0.013 (3)−0.018 (2)0.015 (2)
C290.042 (2)0.035 (2)0.046 (2)−0.008 (2)−0.013 (2)0.0141 (17)
C260.067 (4)0.033 (2)0.077 (4)0.005 (2)0.039 (3)−0.002 (2)
C270.041 (3)0.033 (2)0.076 (4)−0.0018 (18)0.014 (2)0.013 (2)
C320.103 (4)0.076 (4)0.015 (2)−0.019 (3)−0.008 (2)0.001 (2)
Ni1—N21.850 (3)C15—H150.9300
Ni1—N31.850 (3)C11—C101.415 (4)
Ni1—O21.859 (2)C9—C101.368 (5)
Ni1—N11.937 (3)C9—C81.383 (5)
O2—C201.295 (4)C9—H90.9300
N3—C121.303 (4)C1—H1A0.9701
N3—C191.466 (4)C1—H1B0.9700
N1—C41.499 (4)C16—C171.384 (5)
N1—C11.503 (4)C16—H160.9300
N1—C211.512 (4)C8—H80.9300
N2—C51.374 (4)C30—C291.385 (6)
N2—C61.389 (4)C30—C351.429 (5)
O3—C201.224 (4)C30—C311.431 (6)
O1—C51.226 (4)C10—H100.9300
C7—C81.372 (5)C24—C251.354 (5)
C7—C61.415 (5)C24—C231.433 (5)
C7—H70.9300C24—H240.9299
C14—C151.392 (5)C35—C341.442 (5)
C14—C131.395 (4)C19—H19A0.9701
C14—H140.9299C19—H19B0.9701
C5—C41.505 (4)C34—C331.353 (5)
C20—C191.516 (5)C34—H340.9301
C18—C171.378 (5)C28—C291.379 (5)
C18—C131.394 (5)C28—C271.429 (6)
C18—H180.9300C28—C231.447 (5)
C12—C111.455 (4)C3—H3A0.9701
C12—C131.493 (4)C3—H3B0.9700
C6—C111.421 (4)C17—H170.9299
C21—C221.513 (5)C25—C261.426 (7)
C21—H21A0.9700C25—H250.9300
C21—H21B0.9700C33—C321.403 (7)
C4—C31.548 (5)C33—H330.9300
C4—H40.9800C31—C321.339 (7)
C22—C351.411 (5)C31—H310.9300
C22—C231.417 (5)C29—H290.9300
C2—C11.511 (5)C26—C271.350 (7)
C2—C31.534 (5)C26—H260.9300
C2—H2A0.9701C27—H270.9300
C2—H2B0.9701C32—H320.9300
C15—C161.386 (5)
N2—Ni1—N394.59 (12)C10—C9—H9120.7
N2—Ni1—O2176.00 (11)C8—C9—H9120.5
N3—Ni1—O287.01 (11)N1—C1—C2103.0 (3)
N2—Ni1—N186.14 (11)N1—C1—H1A111.2
N3—Ni1—N1177.26 (12)C2—C1—H1A111.3
O2—Ni1—N192.43 (11)N1—C1—H1B111.1
C20—O2—Ni1116.0 (2)C2—C1—H1B111.1
C12—N3—C19120.2 (3)H1A—C1—H1B109.2
C12—N3—Ni1128.1 (2)C17—C16—C15120.4 (3)
C19—N3—Ni1111.7 (2)C17—C16—H16119.9
C4—N1—C1103.8 (2)C15—C16—H16119.8
C4—N1—C21113.7 (3)C7—C8—C9121.2 (3)
C1—N1—C21108.4 (2)C7—C8—H8119.5
C4—N1—Ni1104.59 (19)C9—C8—H8119.2
C1—N1—Ni1114.3 (2)C29—C30—C35120.0 (3)
C21—N1—Ni1111.8 (2)C29—C30—C31120.8 (4)
C5—N2—C6121.3 (3)C35—C30—C31119.2 (4)
C5—N2—Ni1113.3 (2)C9—C10—C11122.8 (3)
C6—N2—Ni1125.3 (2)C9—C10—H10118.5
C8—C7—C6121.1 (3)C11—C10—H10118.7
C8—C7—H7119.4C25—C24—C23121.8 (4)
C6—C7—H7119.6C25—C24—H24119.4
C15—C14—C13120.2 (3)C23—C24—H24118.8
C15—C14—H14119.8C22—C35—C30119.6 (3)
C13—C14—H14120.0C22—C35—C34123.8 (3)
O1—C5—N2127.5 (3)C30—C35—C34116.5 (3)
O1—C5—C4119.7 (3)N3—C19—C20109.3 (3)
N2—C5—C4112.8 (3)N3—C19—H19A110.0
O3—C20—O2125.3 (3)C20—C19—H19A109.9
O3—C20—C19120.2 (3)N3—C19—H19B109.7
O2—C20—C19114.4 (3)C20—C19—H19B109.6
C17—C18—C13120.3 (3)H19A—C19—H19B108.3
C17—C18—H18119.9C33—C34—C35121.5 (4)
C13—C18—H18119.8C33—C34—H34119.4
N3—C12—C11122.3 (3)C35—C34—H34119.2
N3—C12—C13118.3 (3)C29—C28—C27121.9 (4)
C11—C12—C13119.3 (3)C29—C28—C23119.6 (4)
C18—C13—C14119.3 (3)C27—C28—C23118.5 (4)
C18—C13—C12121.8 (3)C22—C23—C24123.3 (3)
C14—C13—C12118.9 (3)C22—C23—C28119.2 (3)
N2—C6—C7120.6 (3)C24—C23—C28117.5 (3)
N2—C6—C11121.0 (3)C2—C3—C4105.9 (3)
C7—C6—C11118.3 (3)C2—C3—H3A110.6
N1—C21—C22114.9 (3)C4—C3—H3A110.4
N1—C21—H21A108.8C2—C3—H3B110.5
C22—C21—H21A108.6C4—C3—H3B110.7
N1—C21—H21B108.4H3A—C3—H3B108.7
C22—C21—H21B108.4C18—C17—C16120.2 (3)
H21A—C21—H21B107.5C18—C17—H17119.7
N1—C4—C5110.6 (3)C16—C17—H17120.0
N1—C4—C3104.9 (3)C24—C25—C26120.1 (5)
C5—C4—C3112.2 (3)C24—C25—H25119.8
N1—C4—H4109.7C26—C25—H25120.0
C5—C4—H4109.7C34—C33—C32121.3 (5)
C3—C4—H4109.6C34—C33—H33119.2
C35—C22—C23119.7 (3)C32—C33—H33119.5
C35—C22—C21121.2 (3)C32—C31—C30121.8 (4)
C23—C22—C21119.1 (3)C32—C31—H31119.1
C1—C2—C3103.1 (3)C30—C31—H31119.1
C1—C2—H2A111.0C28—C29—C30121.7 (4)
C3—C2—H2A111.1C28—C29—H29119.1
C1—C2—H2B111.3C30—C29—H29119.3
C3—C2—H2B111.1C27—C26—C25120.5 (4)
H2A—C2—H2B109.1C27—C26—H26119.7
C16—C15—C14119.6 (3)C25—C26—H26119.8
C16—C15—H15120.2C26—C27—C28121.4 (4)
C14—C15—H15120.2C26—C27—H27119.2
C10—C11—C6117.8 (3)C28—C27—H27119.5
C10—C11—C12118.5 (3)C31—C32—C33119.8 (4)
C6—C11—C12123.7 (3)C31—C32—H32120.1
C10—C9—C8118.8 (3)C33—C32—H32120.1
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Chiral nickel(II) complexes in the preparation of 11C- and 18F-labelled enantiomerically pure α-amino acids.

Authors:  Alexander Popkov; Bart De Spiegeleer
Journal:  Dalton Trans       Date:  2011-12-08       Impact factor: 4.390

3.  Electronic structure of the nickel(II) complex of the Schiff base of (S)-N-(2-benzoylphenyl)-1-benzylprolinamide and glycine.

Authors:  Jozef Kozísek; Marek Fronc; Pavol Skubák; Alexander Popkov; Martin Breza; Hartmut Fuess; Carsten Paulmann
Journal:  Acta Crystallogr A       Date:  2004-08-26       Impact factor: 2.290

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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