Literature DB >> 22807746

Oxido[N-(2-oxidobenzyl-idene-κO)leucinato-κ²N,O](1,10-phenanthroline-κ²N,N')vanadium(IV).

Cheng-Yuan Wang1, Bu-Qin Jing, Jian-Fang Dong, Lian-Zhi Li.   

Abstract

In the title V(IV) complex, [VO(C₁₃H₁₅NO₃)(C₁₂H₈N₂)], the oxidovanadium cation is N,N'-chelated by a 1-10-phenanthroline ligand and N,O,O'-chelated by a Schiff base anion in a distorted octa-hedral geometry. Weak inter-molecular C-H⋯O hydrogen bonds occur in the crystal structure which contains solvent-accessible voids of 81 ų.

Entities:  

Year:  2012        PMID: 22807746      PMCID: PMC3393178          DOI: 10.1107/S1600536812025391

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological properties of vanadium complexes, see: Baran (2003 ▶). For the structures of similar six-coordinate oxidovanadium complexes with amino acid Schiff base ligands, see: Bian et al. (2011 ▶); Cao et al. (2011 ▶); Xu et al. (2005 ▶); Li et al. (2006 ▶, 2010 ▶); Lu et al. (2011 ▶); Sasmal et al. (2007 ▶).

Experimental

Crystal data

[V(C13H15NO3)O(C12H8N2)] M = 480.40 Hexagonal, a = 33.675 (4) Å c = 10.283 (2) Å V = 10099 (3) Å3 Z = 18 Mo Kα radiation μ = 0.48 mm−1 T = 298 K 0.23 × 0.11 × 0.08 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.898, T max = 0.963 17437 measured reflections 3962 independent reflections 2020 reflections with I > 2σ(I) R int = 0.137

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.128 S = 1.00 3962 reflections 298 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.38 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812025391/xu5555sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025391/xu5555Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[V(C13H15NO3)O(C12H8N2)]Dx = 1.422 Mg m3
Mr = 480.40Mo Kα radiation, λ = 0.71073 Å
Hexagonal, R3Cell parameters from 3014 reflections
Hall symbol: -R 3θ = 2.4–28.3°
a = 33.675 (4) ŵ = 0.48 mm1
c = 10.283 (2) ÅT = 298 K
V = 10099 (3) Å3Block, yellow
Z = 180.23 × 0.11 × 0.08 mm
F(000) = 4482
Bruker SMART 1000 CCD area-detector diffractometer3962 independent reflections
Radiation source: fine-focus sealed tube2020 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.137
φ and ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −35→40
Tmin = 0.898, Tmax = 0.963k = −39→39
17437 measured reflectionsl = −12→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0477P)2] where P = (Fo2 + 2Fc2)/3
3962 reflections(Δ/σ)max < 0.001
298 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
V10.88840 (2)0.14374 (2)0.82377 (7)0.0405 (3)
N10.93728 (11)0.12709 (11)0.7777 (3)0.0400 (9)
N20.85177 (11)0.17154 (11)0.9193 (3)0.0364 (9)
N30.93599 (11)0.19076 (10)0.9904 (3)0.0344 (9)
O10.87689 (9)0.09726 (9)0.9600 (3)0.0488 (8)
O20.89395 (11)0.04585 (11)1.0382 (3)0.0667 (10)
O30.92356 (10)0.20089 (9)0.7295 (3)0.0486 (8)
O40.84766 (10)0.11361 (10)0.7265 (3)0.0594 (9)
C10.89801 (15)0.07417 (16)0.9562 (5)0.0482 (13)
C20.92849 (15)0.08310 (14)0.8356 (5)0.0493 (13)
H20.95750.08500.86050.059*
C30.90355 (16)0.04533 (15)0.7341 (5)0.0632 (15)
H3A0.87580.04540.70960.076*
H3B0.92280.05360.65740.076*
C40.89048 (18)−0.00300 (17)0.7707 (6)0.0700 (16)
H40.8709−0.01120.84790.084*
C50.9313 (2)−0.00798 (19)0.8060 (7)0.121 (3)
H5A0.9210−0.03900.83180.181*
H5B0.94770.01230.87660.181*
H5C0.9512−0.00040.73210.181*
C60.8627 (2)−0.03564 (18)0.6648 (6)0.109 (2)
H6A0.8541−0.06630.69030.164*
H6B0.8805−0.02790.58650.164*
H6C0.8356−0.03370.64980.164*
C70.97293 (15)0.14987 (16)0.7061 (4)0.0469 (12)
H70.99210.13770.69390.056*
C80.98550 (14)0.19273 (15)0.6433 (4)0.0399 (11)
C90.96116 (15)0.21653 (15)0.6601 (4)0.0415 (11)
C100.97886 (17)0.25974 (16)0.6011 (5)0.0570 (14)
H100.96390.27630.61330.068*
C111.01764 (19)0.27800 (19)0.5261 (5)0.0657 (15)
H111.02880.30680.48880.079*
C121.04026 (17)0.2539 (2)0.5057 (5)0.0657 (16)
H121.06590.26590.45220.079*
C131.02484 (15)0.21226 (18)0.5642 (5)0.0563 (14)
H131.04070.19650.55150.068*
C140.80925 (14)0.16091 (14)0.8869 (4)0.0444 (12)
H140.79520.14090.81770.053*
C150.78503 (15)0.17820 (16)0.9513 (5)0.0534 (14)
H150.75540.16980.92570.064*
C160.80519 (17)0.20759 (17)1.0524 (5)0.0536 (14)
H160.78900.21871.09800.064*
C170.85043 (16)0.22109 (15)1.0881 (4)0.0421 (12)
C180.87224 (13)0.20153 (13)1.0202 (4)0.0332 (10)
C190.91747 (13)0.21233 (13)1.0547 (4)0.0329 (10)
C200.94042 (15)0.24385 (14)1.1550 (4)0.0409 (11)
C210.98392 (16)0.25152 (15)1.1888 (5)0.0515 (13)
H211.00030.27191.25540.062*
C221.00214 (15)0.22934 (16)1.1246 (5)0.0491 (13)
H221.03100.23421.14640.059*
C230.97694 (15)0.19928 (14)1.0259 (4)0.0430 (12)
H230.98980.18420.98220.052*
C240.87448 (19)0.25339 (16)1.1893 (5)0.0551 (14)
H240.86020.26671.23460.066*
C250.91796 (18)0.26461 (16)1.2196 (4)0.0565 (14)
H250.93350.28641.28390.068*
U11U22U33U12U13U23
V10.0317 (5)0.0396 (5)0.0497 (5)0.0173 (4)−0.0018 (4)−0.0068 (4)
N10.030 (2)0.037 (2)0.053 (3)0.0164 (19)0.0006 (19)−0.0056 (19)
N20.029 (2)0.036 (2)0.045 (2)0.0169 (18)0.0024 (18)0.0046 (19)
N30.027 (2)0.033 (2)0.045 (2)0.0173 (18)−0.0001 (18)−0.0003 (17)
O10.0430 (19)0.0417 (19)0.062 (2)0.0215 (17)0.0091 (16)0.0017 (16)
O20.070 (2)0.064 (2)0.068 (3)0.035 (2)0.0031 (19)0.017 (2)
O30.047 (2)0.0468 (19)0.059 (2)0.0287 (17)0.0139 (17)0.0082 (16)
O40.048 (2)0.059 (2)0.071 (2)0.0265 (17)−0.0164 (17)−0.0237 (18)
C10.037 (3)0.039 (3)0.057 (4)0.011 (3)−0.005 (3)−0.007 (3)
C20.036 (3)0.035 (3)0.077 (4)0.018 (2)−0.001 (3)−0.002 (3)
C30.067 (4)0.044 (3)0.083 (4)0.030 (3)0.001 (3)−0.005 (3)
C40.065 (4)0.046 (3)0.103 (5)0.030 (3)0.000 (3)−0.005 (3)
C50.085 (5)0.068 (4)0.221 (8)0.047 (4)−0.010 (5)0.009 (5)
C60.131 (6)0.050 (4)0.136 (6)0.038 (4)−0.034 (5)−0.031 (4)
C70.041 (3)0.051 (3)0.059 (3)0.031 (3)−0.001 (3)−0.013 (3)
C80.035 (3)0.040 (3)0.043 (3)0.018 (2)0.003 (2)−0.001 (2)
C90.038 (3)0.040 (3)0.037 (3)0.013 (3)−0.010 (2)−0.010 (2)
C100.070 (4)0.048 (3)0.052 (3)0.028 (3)−0.001 (3)−0.001 (3)
C110.075 (4)0.066 (4)0.039 (3)0.022 (4)0.001 (3)0.010 (3)
C120.046 (3)0.086 (4)0.043 (4)0.017 (3)0.001 (3)0.006 (3)
C130.037 (3)0.071 (4)0.055 (3)0.023 (3)0.001 (3)−0.007 (3)
C140.026 (3)0.040 (3)0.063 (3)0.013 (2)−0.005 (2)0.001 (2)
C150.031 (3)0.058 (3)0.082 (4)0.030 (3)0.005 (3)0.014 (3)
C160.054 (4)0.063 (4)0.061 (4)0.042 (3)0.023 (3)0.022 (3)
C170.046 (3)0.044 (3)0.047 (3)0.031 (3)0.014 (3)0.012 (2)
C180.033 (3)0.029 (2)0.038 (3)0.015 (2)0.007 (2)0.010 (2)
C190.031 (3)0.028 (2)0.037 (3)0.012 (2)0.008 (2)0.008 (2)
C200.046 (3)0.039 (3)0.035 (3)0.019 (3)0.006 (2)0.002 (2)
C210.051 (3)0.047 (3)0.047 (3)0.017 (3)−0.009 (3)−0.007 (2)
C220.029 (3)0.057 (3)0.059 (3)0.020 (3)−0.006 (3)−0.001 (3)
C230.037 (3)0.040 (3)0.049 (3)0.018 (2)0.002 (2)0.001 (3)
C240.071 (4)0.047 (3)0.057 (4)0.036 (3)0.023 (3)0.005 (3)
C250.066 (4)0.052 (3)0.049 (3)0.028 (3)0.005 (3)−0.010 (3)
V1—O11.989 (3)C7—H70.9300
V1—O31.941 (3)C8—C131.407 (6)
V1—O41.587 (3)C8—C91.414 (6)
V1—N12.042 (3)C9—C101.405 (6)
V1—N22.125 (3)C10—C111.369 (6)
V1—N32.340 (3)C10—H100.9300
N1—C71.285 (5)C11—C121.379 (6)
N1—C21.483 (5)C11—H110.9300
N2—C141.333 (5)C12—C131.367 (6)
N2—C181.369 (5)C12—H120.9300
N3—C231.312 (5)C13—H130.9300
N3—C191.344 (5)C14—C151.385 (6)
O1—C11.290 (5)C14—H140.9300
O2—C11.228 (5)C15—C161.360 (6)
O3—C91.313 (5)C15—H150.9300
C1—C21.541 (6)C16—C171.403 (6)
C2—C31.531 (6)C16—H160.9300
C2—H20.9800C17—C181.394 (5)
C3—C41.506 (6)C17—C241.429 (6)
C3—H3A0.9700C18—C191.423 (5)
C3—H3B0.9700C19—C201.403 (5)
C4—C61.497 (7)C20—C211.398 (6)
C4—C51.511 (6)C20—C251.425 (6)
C4—H40.9800C21—C221.352 (6)
C5—H5A0.9600C21—H210.9300
C5—H5B0.9600C22—C231.384 (6)
C5—H5C0.9600C22—H220.9300
C6—H6A0.9600C23—H230.9300
C6—H6B0.9600C24—C251.353 (6)
C6—H6C0.9600C24—H240.9300
C7—C81.438 (6)C25—H250.9300
O4—V1—O3102.90 (15)H6B—C6—H6C109.5
O4—V1—O1100.04 (14)N1—C7—C8125.1 (4)
O3—V1—O1156.11 (12)N1—C7—H7117.5
O4—V1—N1103.66 (14)C8—C7—H7117.5
O3—V1—N188.88 (13)C13—C8—C9118.9 (4)
O1—V1—N179.28 (13)C13—C8—C7117.7 (4)
O4—V1—N293.81 (14)C9—C8—C7123.4 (4)
O3—V1—N289.71 (12)O3—C9—C10118.4 (4)
O1—V1—N295.35 (12)O3—C9—C8123.7 (4)
N1—V1—N2162.35 (14)C10—C9—C8118.0 (4)
O4—V1—N3167.06 (14)C11—C10—C9121.6 (5)
O3—V1—N379.80 (12)C11—C10—H10119.2
O1—V1—N379.32 (11)C9—C10—H10119.2
N1—V1—N388.98 (12)C10—C11—C12120.3 (5)
N2—V1—N373.46 (13)C10—C11—H11119.8
C7—N1—C2119.1 (4)C12—C11—H11119.8
C7—N1—V1127.6 (3)C13—C12—C11119.9 (5)
C2—N1—V1113.3 (3)C13—C12—H12120.1
C14—N2—C18117.7 (4)C11—C12—H12120.1
C14—N2—V1123.2 (3)C12—C13—C8121.3 (5)
C18—N2—V1119.1 (3)C12—C13—H13119.3
C23—N3—C19117.8 (4)C8—C13—H13119.3
C23—N3—V1129.9 (3)N2—C14—C15123.2 (4)
C19—N3—V1112.3 (3)N2—C14—H14118.4
C1—O1—V1120.3 (3)C15—C14—H14118.4
C9—O3—V1131.1 (3)C16—C15—C14119.1 (4)
O2—C1—O1124.5 (5)C16—C15—H15120.4
O2—C1—C2120.6 (5)C14—C15—H15120.4
O1—C1—C2114.9 (4)C15—C16—C17120.1 (4)
N1—C2—C3108.0 (4)C15—C16—H16119.9
N1—C2—C1107.4 (4)C17—C16—H16119.9
C3—C2—C1110.6 (4)C18—C17—C16117.3 (4)
N1—C2—H2110.3C18—C17—C24119.5 (4)
C3—C2—H2110.3C16—C17—C24123.2 (5)
C1—C2—H2110.3N2—C18—C17122.5 (4)
C4—C3—C2118.1 (4)N2—C18—C19117.2 (4)
C4—C3—H3A107.8C17—C18—C19120.2 (4)
C2—C3—H3A107.8N3—C19—C20122.8 (4)
C4—C3—H3B107.8N3—C19—C18117.8 (4)
C2—C3—H3B107.8C20—C19—C18119.4 (4)
H3A—C3—H3B107.1C21—C20—C19116.9 (4)
C6—C4—C3110.4 (5)C21—C20—C25123.9 (4)
C6—C4—C5111.3 (5)C19—C20—C25119.1 (4)
C3—C4—C5112.9 (4)C22—C21—C20120.0 (4)
C6—C4—H4107.3C22—C21—H21120.0
C3—C4—H4107.3C20—C21—H21120.0
C5—C4—H4107.3C21—C22—C23118.7 (4)
C4—C5—H5A109.5C21—C22—H22120.6
C4—C5—H5B109.5C23—C22—H22120.6
H5A—C5—H5B109.5N3—C23—C22123.8 (4)
C4—C5—H5C109.5N3—C23—H23118.1
H5A—C5—H5C109.5C22—C23—H23118.1
H5B—C5—H5C109.5C25—C24—C17120.2 (4)
C4—C6—H6A109.5C25—C24—H24119.9
C4—C6—H6B109.5C17—C24—H24119.9
H6A—C6—H6B109.5C24—C25—C20121.5 (4)
C4—C6—H6C109.5C24—C25—H25119.3
H6A—C6—H6C109.5C20—C25—H25119.3
C1—C2—C3—C4−62.4 (6)
D—H···AD—HH···AD···AD—H···A
C12—H12···O4i0.932.443.311 (6)156
C24—H24···O1ii0.932.513.224 (6)134
Table 1

Selected bond lengths (Å)

V1—O11.989 (3)
V1—O31.941 (3)
V1—O41.587 (3)
V1—N12.042 (3)
V1—N22.125 (3)
V1—N32.340 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C12—H12⋯O4i 0.932.443.311 (6)156
C24—H24⋯O1ii 0.932.513.224 (6)134

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ternary oxovanadium(IV) complexes with amino acid-Schiff base and polypyridyl derivatives: synthesis, characterization, and protein tyrosine phosphatase 1B inhibition.

Authors:  Liping Lu; Jinjun Yue; Caixia Yuan; Miaoli Zhu; Hong Han; Zhiwei Liu; Maolin Guo
Journal:  J Inorg Biochem       Date:  2011-07-28       Impact factor: 4.155

3.  DNA cleavage by new oxovanadium(IV) complexes of N-salicylidene alpha-amino acids and phenanthroline bases in the photodynamic therapy window.

Authors:  Pijus K Sasmal; Ashis K Patra; Munirathinam Nethaji; Akhil R Chakravarty
Journal:  Inorg Chem       Date:  2007-11-17       Impact factor: 5.165

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.