Literature DB >> 22807723

Dichloridobis(pyridine-2-thiol-ato-κ²N,S)tin(IV): a new polymorph.

Sheyda R Ismaylova1, Zhanna V Matsulevich, Galina N Borisova, Alexander V Borisov, Victor N Khrustalev.   

Abstract

The title compound, [SnCl₂(C₅H₄NS)₂], is the product of reaction of 2,2'-dipyridyl disulfide with tin tetra-chloride. The Sn(IV) atom adopts a distorted octa-hedral geometry, with the two bidentate pyridine-2-thiol-ate ligands forming two planar four-membered chelate rings. The two Sn-Cl, two Sn-N and two Sn-S bonds are in cis, cis and trans configurations, respectively. The crystal grown from acetonitrile represents a new monoclinic polymorph in space group C2/c with the mol-ecule having twofold rotational symmetry, the Sn(IV) atom lying on the twofold axis. The mol-ecular structure of the monoclinic polymorph is very close to that of the triclinic polymorph studied previously in space group P-1, the mol-ecule occupying a general position [Masaki & Matsunami (1976 ▶). Bull. Chem. Soc. Jpn, 49, 3274-3279; Masaki et al. (1978 ▶). Bull. Chem. Soc. Jpn, 51, 3298-3301]. Apparently, the formation of the two polymorphs is determined by the different systems of inter-molecular inter-actions. In the crystal of the monoclinic polymorph, mol-ecules are bound into ribbons along the c axis by C-H⋯Cl hydrogen bonds, whereas in the crystal of the triclinic polymorph, mol-ecules form chains along the a axis by attractive S⋯S inter-actions. The crystal studied was a pseudo-merohedral twin; the refined BASF value is 0.221 (1).

Entities:  

Year:  2012        PMID: 22807723      PMCID: PMC3393155          DOI: 10.1107/S1600536812024026

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal complexes with 2,2′-dipyridyl dichalcogenides, see: Kadooka et al. (1976a ▶,b ▶); Cheng et al. (1996 ▶); Kienitz et al. (1996 ▶); Bell et al. (2000 ▶); Kita et al. (2001 ▶); Kedarnath et al. (2009 ▶). For the triclinic polymorph, see: Masaki & Matsunami (1976 ▶); Masaki et al. (1978 ▶).

Experimental

Crystal data

[SnCl2(C5H4NS)2] M = 409.93 Monoclinic, a = 6.3240 (7) Å b = 12.9391 (14) Å c = 16.4240 (18) Å β = 100.922 (2)° V = 1319.6 (3) Å3 Z = 4 Mo Kα radiation μ = 2.63 mm−1 T = 100 K 0.16 × 0.14 × 0.10 mm

Data collection

Bruker SMART 1K CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.678, T max = 0.779 6681 measured reflections 1584 independent reflections 1562 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.050 S = 1.00 1584 reflections 79 parameters H-atom parameters constrained Δρmax = 0.81 e Å−3 Δρmin = −0.53 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812024026/rk2356sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024026/rk2356Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[SnCl2(C5H4NS)2]F(000) = 792
Mr = 409.93Dx = 2.063 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6340 reflections
a = 6.3240 (7) Åθ = 2.5–30.0°
b = 12.9391 (14) ŵ = 2.63 mm1
c = 16.4240 (18) ÅT = 100 K
β = 100.922 (2)°Prism, colourless
V = 1319.6 (3) Å30.16 × 0.14 × 0.10 mm
Z = 4
Bruker SMART 1K CCD diffractometer1584 independent reflections
Radiation source: fine-focus sealed tube1562 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ– and ω–scansθmax = 28.0°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −8→8
Tmin = 0.678, Tmax = 0.779k = −16→16
6681 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.050H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.014P)2 + 7.75P] where P = (Fo2 + 2Fc2)/3
1584 reflections(Δ/σ)max < 0.001
79 parametersΔρmax = 0.81 e Å3
0 restraintsΔρmin = −0.53 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Sn10.50000.38034 (2)0.25000.01554 (7)
Cl10.68565 (13)0.25722 (5)0.18092 (4)0.02082 (15)
S10.17981 (13)0.41891 (5)0.14189 (4)0.01907 (14)
N10.5510 (4)0.50833 (19)0.16215 (15)0.0166 (5)
C10.3563 (5)0.5095 (2)0.11252 (18)0.0170 (6)
C20.3100 (5)0.5780 (2)0.04557 (18)0.0201 (6)
H20.17200.57860.01050.024*
C30.4699 (6)0.6444 (2)0.0318 (2)0.0229 (7)
H30.44250.6915−0.01340.028*
C40.6725 (6)0.6430 (2)0.08400 (17)0.0209 (6)
H40.78360.68840.07490.025*
C50.7064 (5)0.5737 (2)0.14906 (17)0.0190 (5)
H50.84250.57220.18540.023*
U11U22U33U12U13U23
Sn10.01793 (13)0.01560 (12)0.01225 (12)0.00000.00070 (12)0.0000
Cl10.0251 (4)0.0200 (3)0.0175 (3)0.0044 (3)0.0042 (3)−0.0017 (2)
S10.0182 (3)0.0197 (3)0.0179 (3)−0.0009 (3)−0.0002 (3)0.0007 (2)
N10.0196 (12)0.0165 (12)0.0131 (11)0.0011 (9)0.0018 (9)−0.0001 (9)
C10.0209 (14)0.0153 (13)0.0152 (13)0.0005 (10)0.0041 (11)−0.0020 (10)
C20.0236 (15)0.0208 (14)0.0150 (13)0.0043 (12)0.0013 (11)−0.0019 (11)
C30.0334 (18)0.0190 (14)0.0164 (14)0.0036 (12)0.0046 (13)0.0014 (11)
C40.0250 (15)0.0190 (14)0.0191 (13)−0.0032 (13)0.0053 (14)−0.0012 (10)
C50.0213 (14)0.0195 (13)0.0161 (12)−0.0007 (12)0.0031 (12)−0.0028 (10)
Sn1—N12.259 (2)C2—C31.379 (5)
Sn1—Cl12.3892 (8)C2—H20.9500
Sn1—S12.4779 (8)C3—C41.400 (5)
S1—C11.748 (3)C3—H30.9500
N1—C11.342 (4)C4—C51.380 (4)
N1—C51.345 (4)C4—H40.9500
C1—C21.399 (4)C5—H50.9500
N1i—Sn1—N185.72 (12)N1—C1—S1112.7 (2)
N1i—Sn1—Cl1159.13 (7)C2—C1—S1126.3 (2)
N1—Sn1—Cl192.47 (7)C3—C2—C1118.3 (3)
Cl1i—Sn1—Cl196.36 (4)C3—C2—H2120.9
N1i—Sn1—S196.54 (7)C1—C2—H2120.9
N1—Sn1—S165.85 (7)C2—C3—C4120.4 (3)
Cl1i—Sn1—S193.80 (3)C2—C3—H3119.8
Cl1—Sn1—S1101.68 (3)C4—C3—H3119.8
S1i—Sn1—S1156.76 (4)C5—C4—C3118.2 (3)
C1—S1—Sn181.67 (10)C5—C4—H4120.9
C1—N1—C5120.7 (3)C3—C4—H4120.9
C1—N1—Sn199.82 (18)N1—C5—C4121.4 (3)
C5—N1—Sn1139.5 (2)N1—C5—H5119.3
N1—C1—C2121.0 (3)C4—C5—H5119.3
N1i—Sn1—S1—C182.81 (12)S1—Sn1—N1—C5179.8 (3)
N1—Sn1—S1—C10.49 (12)C5—N1—C1—C20.5 (4)
Cl1i—Sn1—S1—C1175.74 (10)Sn1—N1—C1—C2−179.2 (2)
Cl1—Sn1—S1—C1−86.96 (10)C5—N1—C1—S1−179.4 (2)
S1i—Sn1—S1—C143.78 (10)Sn1—N1—C1—S10.9 (2)
N1i—Sn1—N1—C1−99.78 (19)Sn1—S1—C1—N1−0.82 (19)
Cl1i—Sn1—N1—C1−14.1 (3)Sn1—S1—C1—C2179.3 (3)
Cl1—Sn1—N1—C1101.05 (17)N1—C1—C2—C30.0 (4)
S1i—Sn1—N1—C1−164.84 (16)S1—C1—C2—C3179.9 (2)
S1—Sn1—N1—C1−0.64 (15)C1—C2—C3—C4−0.2 (5)
N1i—Sn1—N1—C580.6 (3)C2—C3—C4—C5−0.1 (5)
Cl1i—Sn1—N1—C5166.3 (2)C1—N1—C5—C4−0.8 (4)
Cl1—Sn1—N1—C5−78.5 (3)Sn1—N1—C5—C4178.7 (2)
S1i—Sn1—N1—C515.6 (3)C3—C4—C5—N10.6 (5)
D—H···AD—HH···AD···AD—H···A
C3—H3···Cl1ii0.952.803.673 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯Cl1i 0.952.803.673 (3)154

Symmetry code: (i) .

  5 in total

1.  Coordination Chemistry of 2,2'-Dipyridyl Diselenide: X-ray Crystal Structures of PySeSePy, [Zn(PySeSePy)Cl(2)], [(PySeSePy)Hg(C(6)F(5))(2)], [Mo(SePy)(2)(CO)(3)], [W(SePy)(2)(CO)(3)], and [Fe(SePy)(2)(CO)(2)] (PySeSePy = C(5)H(4)NSeSeC(5)H(4)N; SePy = [C(5)H(4)N(2-Se)-N,Se]).

Authors:  Carsten O. Kienitz; Carsten Thöne; Peter G. Jones
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2.  Pyridineselenolate Complexes of Tin and Lead: Sn(2-SeNC(5)H(4))(2), Sn(2-SeNC(5)H(4))(4), Pb(2-SeNC(5)H(4))(2), and Pb(3-Me(3)Si-2-SeNC(5)H(3))(2). Volatile CVD Precursors to Group IV-Group VI Semiconductors.

Authors:  Yifeng Cheng; T. J. Emge; J. G. Brennan
Journal:  Inorg Chem       Date:  1996-01-17       Impact factor: 5.165

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  The novel crystal and molecular structure of bis[bis(2-pyridyl) disulfide]copper(I) perchlorate.

Authors:  M M Kodooka; L G Warner; K Seff
Journal:  J Am Chem Soc       Date:  1976-11-24       Impact factor: 15.419

5.  Bis(3-methyl-2-pyridyl)ditelluride and pyridyl tellurolate complexes of zinc, cadmium, mercury: Synthesis, characterization and their conversion to metal telluride nanoparticles.

Authors:  G Kedarnath; Vimal K Jain; Amey Wadawale; Gautam K Dey
Journal:  Dalton Trans       Date:  2009-08-24       Impact factor: 4.390

  5 in total
  1 in total

1.  Dichloridobis(pyridine-2-seleno-lato-κ(2) N,Se)tin(IV).

Authors:  Gunay Z Mammadova; Sheyda R Ismaylova; Zhanna V Matsulevich; Vladimir K Osmanov; Alexander V Borisov; Victor N Khrustalev
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08
  1 in total

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