Literature DB >> 22807716

Diaqua-bis-[N-(pyridin-4-yl)isonicotin-amide-κN]bis-(thio-cyanato-κN)cobalt(II).

Jacob W Uebler1, Robert L Laduca.   

Abstract

In the title compound, [Co(NCS)₂(C₁₁H₉N₃O)₂(H₂O)₂], the octa-hedrally coordinated Co(II) ion lies on a crystallographic inversion center and is bound by two isothio-cyanate ligands, two aqua ligands and two N-(pyridin-4-yl)isonicotinamide (4-pina) ligands. The dihedral angle between the aromatic rings in the 4-pina ligand is 8.98 (11)°. In the crystal, the individual mol-ecular units are aggregated in three dimensions by O-H⋯N, O-H⋯S and N-H⋯S hydrogen-bonding pathways.

Entities:  

Year:  2012        PMID: 22807716      PMCID: PMC3393148          DOI: 10.1107/S1600536812024105

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other cobalt isothio­cyanate coordination polymers containing dipyridyl ligands, see: Johnston et al. (2007 ▶); Martin et al. (2009 ▶). For other coordination polymers containing the 4-pina ligand, see: Uemura et al. (2008 ▶). For the synthesis of the 4-pina ligand, see: Gardner et al. (1954) ▶.

Experimental

Crystal data

[Co(NCS)2(C11H9N3O)2(H2O)2] M = 609.55 Triclinic, a = 7.0651 (4) Å b = 9.3943 (5) Å c = 10.5943 (6) Å α = 81.433 (1)° β = 76.343 (1)° γ = 71.697 (1)° V = 646.58 (6) Å3 Z = 1 Mo Kα radiation μ = 0.87 mm−1 T = 173 K 0.30 × 0.19 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.778, T max = 0.873 10537 measured reflections 2348 independent reflections 2224 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.079 S = 1.06 2348 reflections 187 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.07 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812024105/hb6817sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024105/hb6817Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(NCS)2(C11H9N3O)2(H2O)2]Z = 1
Mr = 609.55F(000) = 313
Triclinic, P1Dx = 1.565 Mg m3
a = 7.0651 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.3943 (5) ÅCell parameters from 7965 reflections
c = 10.5943 (6) Åθ = 2.3–25.3°
α = 81.433 (1)°µ = 0.87 mm1
β = 76.343 (1)°T = 173 K
γ = 71.697 (1)°Prism, pink
V = 646.58 (6) Å30.30 × 0.19 × 0.16 mm
Bruker APEXII CCD diffractometer2348 independent reflections
Radiation source: fine-focus sealed tube2224 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
φ and ω scansθmax = 25.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.778, Tmax = 0.873k = −11→11
10537 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0374P)2 + 0.6702P] where P = (Fo2 + 2Fc2)/3
2348 reflections(Δ/σ)max < 0.001
187 parametersΔρmax = 1.07 e Å3
4 restraintsΔρmin = −0.33 e Å3
Experimental. REM Highest difference peak 1.065, 1.00 Å from N2
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50001.00000.50000.01560 (12)
S10.01686 (8)0.77868 (6)0.79444 (5)0.02645 (15)
O10.7779 (2)0.86741 (18)0.54694 (15)0.0256 (3)
H1A0.815 (4)0.861 (3)0.6164 (18)0.031*
H1B0.879 (3)0.847 (3)0.4857 (19)0.031*
O20.5678 (2)0.71752 (16)−0.10588 (14)0.0266 (3)
N10.5585 (3)0.86061 (19)0.34441 (16)0.0198 (4)
N20.7178 (3)0.5618 (2)0.05144 (18)0.0283 (4)
H2N0.790 (4)0.462 (2)0.066 (2)0.034*
N30.9194 (3)0.2524 (2)−0.34165 (17)0.0246 (4)
N40.3440 (3)0.8620 (2)0.62833 (17)0.0247 (4)
C10.5605 (3)0.9145 (2)0.2200 (2)0.0246 (5)
H10.52811.02030.20020.030*
C20.6077 (4)0.8233 (3)0.1186 (2)0.0301 (5)
H20.60580.86630.03170.036*
C30.6578 (3)0.6679 (3)0.1461 (2)0.0263 (5)
C40.6567 (3)0.6116 (3)0.2740 (2)0.0280 (5)
H40.69070.50620.29650.034*
C50.6054 (3)0.7106 (2)0.3685 (2)0.0248 (5)
H50.60310.67020.45640.030*
C60.8466 (3)0.3991 (3)−0.3756 (2)0.0273 (5)
H60.85100.4297−0.46560.033*
C70.7661 (3)0.5084 (3)−0.2891 (2)0.0273 (5)
H70.71440.6110−0.31870.033*
C80.7621 (3)0.4658 (2)−0.1579 (2)0.0243 (5)
C90.8341 (3)0.3146 (3)−0.1199 (2)0.0270 (5)
H90.83170.2813−0.03050.032*
C100.9102 (3)0.2119 (2)−0.2148 (2)0.0261 (5)
H100.95780.1081−0.18790.031*
C110.6720 (3)0.5941 (3)−0.0696 (2)0.0274 (5)
C120.2111 (3)0.8259 (2)0.69719 (19)0.0200 (4)
U11U22U33U12U13U23
Co10.0173 (2)0.0152 (2)0.0135 (2)−0.00330 (15)−0.00210 (14)−0.00348 (14)
S10.0252 (3)0.0293 (3)0.0243 (3)−0.0109 (2)−0.0049 (2)0.0058 (2)
O10.0213 (8)0.0345 (9)0.0165 (7)0.0012 (7)−0.0044 (6)−0.0072 (6)
O20.0319 (8)0.0210 (8)0.0237 (8)0.0009 (6)−0.0110 (6)−0.0021 (6)
N10.0195 (8)0.0203 (8)0.0191 (8)−0.0032 (7)−0.0039 (7)−0.0055 (7)
N20.0317 (10)0.0254 (10)0.0266 (10)−0.0055 (8)−0.0058 (8)−0.0045 (8)
N30.0220 (9)0.0267 (9)0.0241 (9)−0.0042 (7)−0.0014 (7)−0.0105 (7)
N40.0288 (10)0.0241 (9)0.0212 (9)−0.0094 (8)−0.0028 (8)−0.0019 (7)
C10.0270 (11)0.0245 (11)0.0223 (11)−0.0054 (9)−0.0064 (9)−0.0043 (8)
C20.0321 (12)0.0437 (14)0.0167 (10)−0.0123 (10)−0.0050 (9)−0.0057 (9)
C30.0195 (10)0.0301 (12)0.0317 (12)−0.0087 (9)0.0005 (9)−0.0160 (9)
C40.0282 (11)0.0225 (11)0.0324 (12)−0.0051 (9)−0.0029 (9)−0.0097 (9)
C50.0271 (11)0.0224 (11)0.0245 (11)−0.0051 (9)−0.0053 (9)−0.0057 (9)
C60.0287 (12)0.0295 (12)0.0220 (11)−0.0059 (9)−0.0032 (9)−0.0058 (9)
C70.0270 (11)0.0232 (11)0.0308 (12)−0.0064 (9)−0.0030 (9)−0.0058 (9)
C80.0173 (10)0.0274 (11)0.0306 (11)−0.0098 (9)0.0010 (8)−0.0122 (9)
C90.0264 (11)0.0387 (13)0.0179 (10)−0.0121 (10)−0.0025 (8)−0.0059 (9)
C100.0261 (11)0.0228 (11)0.0279 (11)−0.0039 (9)−0.0051 (9)−0.0048 (9)
C110.0247 (11)0.0328 (13)0.0265 (11)−0.0130 (10)−0.0024 (9)−0.0027 (9)
C120.0246 (11)0.0158 (9)0.0195 (10)−0.0030 (8)−0.0081 (9)−0.0016 (8)
Co1—O12.0964 (15)C1—C21.388 (3)
Co1—O1i2.0964 (15)C1—H10.9500
Co1—N4i2.0994 (18)C2—C31.392 (3)
Co1—N42.0994 (18)C2—H20.9500
Co1—N1i2.1410 (16)C3—C41.379 (3)
Co1—N12.1410 (16)C4—C51.376 (3)
S1—C121.649 (2)C4—H40.9500
O1—H1A0.825 (16)C5—H50.9500
O1—H1B0.836 (16)C6—C71.373 (3)
O2—C111.225 (3)C6—H60.9500
N1—C11.338 (3)C7—C81.384 (3)
N1—C51.342 (3)C7—H70.9500
N2—C111.364 (3)C8—C91.383 (3)
N2—C31.418 (3)C8—C111.518 (3)
N2—H2N0.927 (17)C9—C101.392 (3)
N3—C101.332 (3)C9—H90.9500
N3—C61.337 (3)C10—H100.9500
N4—C121.154 (3)
O1—Co1—O1i180.0C1—C2—H2120.5
O1—Co1—N4i88.84 (7)C3—C2—H2120.5
O1i—Co1—N4i91.16 (7)C4—C3—C2118.11 (19)
O1—Co1—N491.16 (7)C4—C3—N2117.0 (2)
O1i—Co1—N488.84 (7)C2—C3—N2124.9 (2)
N4i—Co1—N4180.0C5—C4—C3118.9 (2)
O1—Co1—N1i91.88 (6)C5—C4—H4120.6
O1i—Co1—N1i88.12 (6)C3—C4—H4120.6
N4i—Co1—N1i91.27 (7)N1—C5—C4124.2 (2)
N4—Co1—N1i88.73 (7)N1—C5—H5117.9
O1—Co1—N188.12 (6)C4—C5—H5117.9
O1i—Co1—N191.88 (6)N3—C6—C7124.4 (2)
N4i—Co1—N188.73 (7)N3—C6—H6117.8
N4—Co1—N191.27 (7)C7—C6—H6117.8
N1i—Co1—N1180.0C6—C7—C8118.5 (2)
Co1—O1—H1A127.1 (18)C6—C7—H7120.8
Co1—O1—H1B117.5 (17)C8—C7—H7120.8
H1A—O1—H1B110 (2)C9—C8—C7118.34 (19)
C1—N1—C5116.63 (18)C9—C8—C11126.7 (2)
C1—N1—Co1123.33 (14)C7—C8—C11114.90 (19)
C5—N1—Co1119.97 (14)C8—C9—C10118.9 (2)
C11—N2—C3124.0 (2)C8—C9—H9120.6
C11—N2—H2N112.7 (16)C10—C9—H9120.6
C3—N2—H2N123.3 (16)N3—C10—C9123.2 (2)
C10—N3—C6116.73 (18)N3—C10—H10118.4
C12—N4—Co1159.23 (17)C9—C10—H10118.4
N1—C1—C2123.2 (2)O2—C11—N2123.0 (2)
N1—C1—H1118.4O2—C11—C8121.9 (2)
C2—C1—H1118.4N2—C11—C8115.1 (2)
C1—C2—C3119.0 (2)N4—C12—S1178.42 (19)
O1—Co1—N1—C1−124.58 (17)C11—N2—C3—C2−22.5 (3)
O1i—Co1—N1—C155.42 (17)C2—C3—C4—C50.3 (3)
N4i—Co1—N1—C1−35.70 (17)N2—C3—C4—C5178.0 (2)
N4—Co1—N1—C1144.30 (17)C1—N1—C5—C40.8 (3)
N1i—Co1—N1—C127 (35)Co1—N1—C5—C4−176.15 (17)
O1—Co1—N1—C552.17 (16)C3—C4—C5—N1−1.0 (3)
O1i—Co1—N1—C5−127.83 (16)C10—N3—C6—C70.5 (3)
N4i—Co1—N1—C5141.05 (16)N3—C6—C7—C81.1 (3)
N4—Co1—N1—C5−38.95 (16)C6—C7—C8—C9−1.8 (3)
N1i—Co1—N1—C5−156 (35)C6—C7—C8—C11179.56 (19)
O1—Co1—N4—C12156.5 (5)C7—C8—C9—C100.9 (3)
O1i—Co1—N4—C12−23.5 (5)C11—C8—C9—C10179.4 (2)
N4i—Co1—N4—C12−129 (100)C6—N3—C10—C9−1.5 (3)
N1i—Co1—N4—C1264.7 (5)C8—C9—C10—N30.8 (3)
N1—Co1—N4—C12−115.3 (5)C3—N2—C11—O2−2.7 (3)
C5—N1—C1—C20.1 (3)C3—N2—C11—C8176.58 (19)
Co1—N1—C1—C2176.94 (16)C9—C8—C11—O2−161.6 (2)
N1—C1—C2—C3−0.7 (3)C7—C8—C11—O216.8 (3)
C1—C2—C3—C40.5 (3)C9—C8—C11—N219.1 (3)
C1—C2—C3—N2−177.0 (2)C7—C8—C11—N2−162.41 (19)
C11—N2—C3—C4159.9 (2)Co1—N4—C12—S17 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1A···S1ii0.83 (2)2.52 (2)3.3129 (16)162 (2)
O1—H1B···N3iii0.84 (2)1.95 (2)2.755 (2)162 (2)
N2—H2N···S1iv0.93 (2)2.68 (2)3.540 (2)155 (2)
Table 1

Selected bond lengths (Å)

Co1—O12.0964 (15)
Co1—N42.0994 (18)
Co1—N12.1410 (16)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1A⋯S1i 0.83 (2)2.52 (2)3.3129 (16)162 (2)
O1—H1B⋯N3ii 0.84 (2)1.95 (2)2.755 (2)162 (2)
N2—H2N⋯S1iii 0.93 (2)2.68 (2)3.540 (2)155 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Zipped-up chain-type coordination polymers: unsymmetrical amide-containing ligands inducing beta-sheet or helical structures. kazu-u@yamaguchi-u.ac.jp.

Authors:  Kazuhiro Uemura; Yuki Kumamoto; Susumu Kitagawa
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

  2 in total

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