| Literature DB >> 22807716 |
Jacob W Uebler1, Robert L Laduca.
Abstract
In the title compound, [Co(NCS)₂(C₁₁H₉N₃O)₂(H₂O)₂], the octa-hedrally coordinated Co(II) ion lies on a crystallographic inversion center and is bound by two isothio-cyanate ligands, two aqua ligands and two N-(pyridin-4-yl)isonicotinamide (4-pina) ligands. The dihedral angle between the aromatic rings in the 4-pina ligand is 8.98 (11)°. In the crystal, the individual mol-ecular units are aggregated in three dimensions by O-H⋯N, O-H⋯S and N-H⋯S hydrogen-bonding pathways.Entities:
Year: 2012 PMID: 22807716 PMCID: PMC3393148 DOI: 10.1107/S1600536812024105
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(NCS)2(C11H9N3O)2(H2O)2] | |
| Triclinic, | |
| Mo | |
| Cell parameters from 7965 reflections | |
| θ = 2.3–25.3° | |
| α = 81.433 (1)° | µ = 0.87 mm−1 |
| β = 76.343 (1)° | |
| γ = 71.697 (1)° | Prism, pink |
| 0.30 × 0.19 × 0.16 mm |
| Bruker APEXII CCD diffractometer | 2348 independent reflections |
| Radiation source: fine-focus sealed tube | 2224 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.3°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 10537 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2348 reflections | (Δ/σ)max < 0.001 |
| 187 parameters | Δρmax = 1.07 e Å−3 |
| 4 restraints | Δρmin = −0.33 e Å−3 |
| Experimental. REM Highest difference peak 1.065, 1.00 Å from N2 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 0.5000 | 1.0000 | 0.5000 | 0.01560 (12) | |
| S1 | 0.01686 (8) | 0.77868 (6) | 0.79444 (5) | 0.02645 (15) | |
| O1 | 0.7779 (2) | 0.86741 (18) | 0.54694 (15) | 0.0256 (3) | |
| H1A | 0.815 (4) | 0.861 (3) | 0.6164 (18) | 0.031* | |
| H1B | 0.879 (3) | 0.847 (3) | 0.4857 (19) | 0.031* | |
| O2 | 0.5678 (2) | 0.71752 (16) | −0.10588 (14) | 0.0266 (3) | |
| N1 | 0.5585 (3) | 0.86061 (19) | 0.34441 (16) | 0.0198 (4) | |
| N2 | 0.7178 (3) | 0.5618 (2) | 0.05144 (18) | 0.0283 (4) | |
| H2N | 0.790 (4) | 0.462 (2) | 0.066 (2) | 0.034* | |
| N3 | 0.9194 (3) | 0.2524 (2) | −0.34165 (17) | 0.0246 (4) | |
| N4 | 0.3440 (3) | 0.8620 (2) | 0.62833 (17) | 0.0247 (4) | |
| C1 | 0.5605 (3) | 0.9145 (2) | 0.2200 (2) | 0.0246 (5) | |
| H1 | 0.5281 | 1.0203 | 0.2002 | 0.030* | |
| C2 | 0.6077 (4) | 0.8233 (3) | 0.1186 (2) | 0.0301 (5) | |
| H2 | 0.6058 | 0.8663 | 0.0317 | 0.036* | |
| C3 | 0.6578 (3) | 0.6679 (3) | 0.1461 (2) | 0.0263 (5) | |
| C4 | 0.6567 (3) | 0.6116 (3) | 0.2740 (2) | 0.0280 (5) | |
| H4 | 0.6907 | 0.5062 | 0.2965 | 0.034* | |
| C5 | 0.6054 (3) | 0.7106 (2) | 0.3685 (2) | 0.0248 (5) | |
| H5 | 0.6031 | 0.6702 | 0.4564 | 0.030* | |
| C6 | 0.8466 (3) | 0.3991 (3) | −0.3756 (2) | 0.0273 (5) | |
| H6 | 0.8510 | 0.4297 | −0.4656 | 0.033* | |
| C7 | 0.7661 (3) | 0.5084 (3) | −0.2891 (2) | 0.0273 (5) | |
| H7 | 0.7144 | 0.6110 | −0.3187 | 0.033* | |
| C8 | 0.7621 (3) | 0.4658 (2) | −0.1579 (2) | 0.0243 (5) | |
| C9 | 0.8341 (3) | 0.3146 (3) | −0.1199 (2) | 0.0270 (5) | |
| H9 | 0.8317 | 0.2813 | −0.0305 | 0.032* | |
| C10 | 0.9102 (3) | 0.2119 (2) | −0.2148 (2) | 0.0261 (5) | |
| H10 | 0.9578 | 0.1081 | −0.1879 | 0.031* | |
| C11 | 0.6720 (3) | 0.5941 (3) | −0.0696 (2) | 0.0274 (5) | |
| C12 | 0.2111 (3) | 0.8259 (2) | 0.69719 (19) | 0.0200 (4) |
| Co1 | 0.0173 (2) | 0.0152 (2) | 0.0135 (2) | −0.00330 (15) | −0.00210 (14) | −0.00348 (14) |
| S1 | 0.0252 (3) | 0.0293 (3) | 0.0243 (3) | −0.0109 (2) | −0.0049 (2) | 0.0058 (2) |
| O1 | 0.0213 (8) | 0.0345 (9) | 0.0165 (7) | 0.0012 (7) | −0.0044 (6) | −0.0072 (6) |
| O2 | 0.0319 (8) | 0.0210 (8) | 0.0237 (8) | 0.0009 (6) | −0.0110 (6) | −0.0021 (6) |
| N1 | 0.0195 (8) | 0.0203 (8) | 0.0191 (8) | −0.0032 (7) | −0.0039 (7) | −0.0055 (7) |
| N2 | 0.0317 (10) | 0.0254 (10) | 0.0266 (10) | −0.0055 (8) | −0.0058 (8) | −0.0045 (8) |
| N3 | 0.0220 (9) | 0.0267 (9) | 0.0241 (9) | −0.0042 (7) | −0.0014 (7) | −0.0105 (7) |
| N4 | 0.0288 (10) | 0.0241 (9) | 0.0212 (9) | −0.0094 (8) | −0.0028 (8) | −0.0019 (7) |
| C1 | 0.0270 (11) | 0.0245 (11) | 0.0223 (11) | −0.0054 (9) | −0.0064 (9) | −0.0043 (8) |
| C2 | 0.0321 (12) | 0.0437 (14) | 0.0167 (10) | −0.0123 (10) | −0.0050 (9) | −0.0057 (9) |
| C3 | 0.0195 (10) | 0.0301 (12) | 0.0317 (12) | −0.0087 (9) | 0.0005 (9) | −0.0160 (9) |
| C4 | 0.0282 (11) | 0.0225 (11) | 0.0324 (12) | −0.0051 (9) | −0.0029 (9) | −0.0097 (9) |
| C5 | 0.0271 (11) | 0.0224 (11) | 0.0245 (11) | −0.0051 (9) | −0.0053 (9) | −0.0057 (9) |
| C6 | 0.0287 (12) | 0.0295 (12) | 0.0220 (11) | −0.0059 (9) | −0.0032 (9) | −0.0058 (9) |
| C7 | 0.0270 (11) | 0.0232 (11) | 0.0308 (12) | −0.0064 (9) | −0.0030 (9) | −0.0058 (9) |
| C8 | 0.0173 (10) | 0.0274 (11) | 0.0306 (11) | −0.0098 (9) | 0.0010 (8) | −0.0122 (9) |
| C9 | 0.0264 (11) | 0.0387 (13) | 0.0179 (10) | −0.0121 (10) | −0.0025 (8) | −0.0059 (9) |
| C10 | 0.0261 (11) | 0.0228 (11) | 0.0279 (11) | −0.0039 (9) | −0.0051 (9) | −0.0048 (9) |
| C11 | 0.0247 (11) | 0.0328 (13) | 0.0265 (11) | −0.0130 (10) | −0.0024 (9) | −0.0027 (9) |
| C12 | 0.0246 (11) | 0.0158 (9) | 0.0195 (10) | −0.0030 (8) | −0.0081 (9) | −0.0016 (8) |
| Co1—O1 | 2.0964 (15) | C1—C2 | 1.388 (3) |
| Co1—O1i | 2.0964 (15) | C1—H1 | 0.9500 |
| Co1—N4i | 2.0994 (18) | C2—C3 | 1.392 (3) |
| Co1—N4 | 2.0994 (18) | C2—H2 | 0.9500 |
| Co1—N1i | 2.1410 (16) | C3—C4 | 1.379 (3) |
| Co1—N1 | 2.1410 (16) | C4—C5 | 1.376 (3) |
| S1—C12 | 1.649 (2) | C4—H4 | 0.9500 |
| O1—H1A | 0.825 (16) | C5—H5 | 0.9500 |
| O1—H1B | 0.836 (16) | C6—C7 | 1.373 (3) |
| O2—C11 | 1.225 (3) | C6—H6 | 0.9500 |
| N1—C1 | 1.338 (3) | C7—C8 | 1.384 (3) |
| N1—C5 | 1.342 (3) | C7—H7 | 0.9500 |
| N2—C11 | 1.364 (3) | C8—C9 | 1.383 (3) |
| N2—C3 | 1.418 (3) | C8—C11 | 1.518 (3) |
| N2—H2N | 0.927 (17) | C9—C10 | 1.392 (3) |
| N3—C10 | 1.332 (3) | C9—H9 | 0.9500 |
| N3—C6 | 1.337 (3) | C10—H10 | 0.9500 |
| N4—C12 | 1.154 (3) | ||
| O1—Co1—O1i | 180.0 | C1—C2—H2 | 120.5 |
| O1—Co1—N4i | 88.84 (7) | C3—C2—H2 | 120.5 |
| O1i—Co1—N4i | 91.16 (7) | C4—C3—C2 | 118.11 (19) |
| O1—Co1—N4 | 91.16 (7) | C4—C3—N2 | 117.0 (2) |
| O1i—Co1—N4 | 88.84 (7) | C2—C3—N2 | 124.9 (2) |
| N4i—Co1—N4 | 180.0 | C5—C4—C3 | 118.9 (2) |
| O1—Co1—N1i | 91.88 (6) | C5—C4—H4 | 120.6 |
| O1i—Co1—N1i | 88.12 (6) | C3—C4—H4 | 120.6 |
| N4i—Co1—N1i | 91.27 (7) | N1—C5—C4 | 124.2 (2) |
| N4—Co1—N1i | 88.73 (7) | N1—C5—H5 | 117.9 |
| O1—Co1—N1 | 88.12 (6) | C4—C5—H5 | 117.9 |
| O1i—Co1—N1 | 91.88 (6) | N3—C6—C7 | 124.4 (2) |
| N4i—Co1—N1 | 88.73 (7) | N3—C6—H6 | 117.8 |
| N4—Co1—N1 | 91.27 (7) | C7—C6—H6 | 117.8 |
| N1i—Co1—N1 | 180.0 | C6—C7—C8 | 118.5 (2) |
| Co1—O1—H1A | 127.1 (18) | C6—C7—H7 | 120.8 |
| Co1—O1—H1B | 117.5 (17) | C8—C7—H7 | 120.8 |
| H1A—O1—H1B | 110 (2) | C9—C8—C7 | 118.34 (19) |
| C1—N1—C5 | 116.63 (18) | C9—C8—C11 | 126.7 (2) |
| C1—N1—Co1 | 123.33 (14) | C7—C8—C11 | 114.90 (19) |
| C5—N1—Co1 | 119.97 (14) | C8—C9—C10 | 118.9 (2) |
| C11—N2—C3 | 124.0 (2) | C8—C9—H9 | 120.6 |
| C11—N2—H2N | 112.7 (16) | C10—C9—H9 | 120.6 |
| C3—N2—H2N | 123.3 (16) | N3—C10—C9 | 123.2 (2) |
| C10—N3—C6 | 116.73 (18) | N3—C10—H10 | 118.4 |
| C12—N4—Co1 | 159.23 (17) | C9—C10—H10 | 118.4 |
| N1—C1—C2 | 123.2 (2) | O2—C11—N2 | 123.0 (2) |
| N1—C1—H1 | 118.4 | O2—C11—C8 | 121.9 (2) |
| C2—C1—H1 | 118.4 | N2—C11—C8 | 115.1 (2) |
| C1—C2—C3 | 119.0 (2) | N4—C12—S1 | 178.42 (19) |
| O1—Co1—N1—C1 | −124.58 (17) | C11—N2—C3—C2 | −22.5 (3) |
| O1i—Co1—N1—C1 | 55.42 (17) | C2—C3—C4—C5 | 0.3 (3) |
| N4i—Co1—N1—C1 | −35.70 (17) | N2—C3—C4—C5 | 178.0 (2) |
| N4—Co1—N1—C1 | 144.30 (17) | C1—N1—C5—C4 | 0.8 (3) |
| N1i—Co1—N1—C1 | 27 (35) | Co1—N1—C5—C4 | −176.15 (17) |
| O1—Co1—N1—C5 | 52.17 (16) | C3—C4—C5—N1 | −1.0 (3) |
| O1i—Co1—N1—C5 | −127.83 (16) | C10—N3—C6—C7 | 0.5 (3) |
| N4i—Co1—N1—C5 | 141.05 (16) | N3—C6—C7—C8 | 1.1 (3) |
| N4—Co1—N1—C5 | −38.95 (16) | C6—C7—C8—C9 | −1.8 (3) |
| N1i—Co1—N1—C5 | −156 (35) | C6—C7—C8—C11 | 179.56 (19) |
| O1—Co1—N4—C12 | 156.5 (5) | C7—C8—C9—C10 | 0.9 (3) |
| O1i—Co1—N4—C12 | −23.5 (5) | C11—C8—C9—C10 | 179.4 (2) |
| N4i—Co1—N4—C12 | −129 (100) | C6—N3—C10—C9 | −1.5 (3) |
| N1i—Co1—N4—C12 | 64.7 (5) | C8—C9—C10—N3 | 0.8 (3) |
| N1—Co1—N4—C12 | −115.3 (5) | C3—N2—C11—O2 | −2.7 (3) |
| C5—N1—C1—C2 | 0.1 (3) | C3—N2—C11—C8 | 176.58 (19) |
| Co1—N1—C1—C2 | 176.94 (16) | C9—C8—C11—O2 | −161.6 (2) |
| N1—C1—C2—C3 | −0.7 (3) | C7—C8—C11—O2 | 16.8 (3) |
| C1—C2—C3—C4 | 0.5 (3) | C9—C8—C11—N2 | 19.1 (3) |
| C1—C2—C3—N2 | −177.0 (2) | C7—C8—C11—N2 | −162.41 (19) |
| C11—N2—C3—C4 | 159.9 (2) | Co1—N4—C12—S1 | 7 (8) |
| H··· | ||||
| O1—H1 | 0.83 (2) | 2.52 (2) | 3.3129 (16) | 162 (2) |
| O1—H1 | 0.84 (2) | 1.95 (2) | 2.755 (2) | 162 (2) |
| N2—H2 | 0.93 (2) | 2.68 (2) | 3.540 (2) | 155 (2) |
Selected bond lengths (Å)
| Co1—O1 | 2.0964 (15) |
| Co1—N4 | 2.0994 (18) |
| Co1—N1 | 2.1410 (16) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.83 (2) | 2.52 (2) | 3.3129 (16) | 162 (2) |
| O1—H1 | 0.84 (2) | 1.95 (2) | 2.755 (2) | 162 (2) |
| N2—H2 | 0.93 (2) | 2.68 (2) | 3.540 (2) | 155 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .