Literature DB >> 22807699

Na₃Co₂(AsO₄)(As₂O₇): a new sodium cobalt arsenate.

Abderrahmen Guesmi1, Ahmed Driss.   

Abstract

In the title compound, tris-odium dicobalt arsenate diarsenate, Na₃Co₂AsO₄As₂O₇, the two Co atoms, one of the two As and three of the seven O atoms lie on special positions, with site symmetries 2 and m for the Co, m for the As, and 2 and twice m for the O atoms. The two Na atoms are disordered over two general and special positions [occupancies 0.72 (3):0.28 (3) and 0.940 (6):0.060 (6), respectively]. The main structural feature is the association of the CoO₆ octa-hedra in the ab plane, forming Co₄O₂₀ units, which are corner- and edge-connected via AsO₄ and As₂O₇ arsenate groups, giving rise to a complex polyhedral connectivity with small tunnels, such as those running along the b- and c-axis directions, in which the Na⁺ ions reside. The structural model is validated by both bond-valence-sum and charge-distribution methods, and the distortion of the coordination polyhedra is analyzed by means of the effective coordination number.

Entities:  

Year:  2012        PMID: 22807699      PMCID: PMC3393142          DOI: 10.1107/S1600536812027791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ruiz-Valero et al. (1996 ▶); Ben Smail & Jouini (2005 ▶); Guesmi & Driss (2002a ▶,b ▶). For bond-valence analysis, see: Brown (2002 ▶); Adams (2003 ▶). For the charge distribution method, see: Nespolo et al. (2001 ▶); Nespolo (2001 ▶); Guesmi et al. (2006 ▶).

Experimental

Crystal data

Na3Co2(AsO4)(As2O7) M = 587.59 Monoclinic, a = 10.484 (3) Å b = 16.309 (2) Å c = 6.531 (1) Å β = 120.40 (2)° V = 963.2 (3) Å3 Z = 4 Mo Kα radiation μ = 13.87 mm−1 T = 293 K 0.20 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.168, T max = 0.338 1765 measured reflections 1183 independent reflections 998 reflections with I > 2σ(I) R int = 0.041 2 standard reflections every 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.067 S = 1.01 1183 reflections 103 parameters Δρmax = 0.72 e Å−3 Δρmin = −0.80 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1995 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and publCIF (Westrip, 2010) ▶. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812027791/jj2142sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812027791/jj2142Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812027791/jj2142Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Na3Co2(AsO4)(As2O7)F(000) = 1096
Mr = 587.59Dx = 4.052 Mg m3
Monoclinic, C2/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yCell parameters from 25 reflections
a = 10.484 (3) Åθ = 11.7–14.5°
b = 16.309 (2) ŵ = 13.87 mm1
c = 6.531 (1) ÅT = 293 K
β = 120.40 (2)°Parallelepiped, pink
V = 963.2 (3) Å30.20 × 0.10 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer998 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.041
Graphite monochromatorθmax = 28.0°, θmin = 2.5°
ω/2θ scansh = −13→13
Absorption correction: ψ scan (North et al., 1968)k = −1→21
Tmin = 0.168, Tmax = 0.338l = −8→3
1765 measured reflections2 standard reflections every 120 min
1183 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027w = 1/[σ2(Fo2) + (0.0261P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.067(Δ/σ)max = 0.005
S = 1.01Δρmax = 0.72 e Å3
1183 reflectionsΔρmin = −0.80 e Å3
103 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.00124 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co10.50000.32196 (5)1.00000.0091 (2)
Co20.29864 (9)0.50000.08408 (15)0.0090 (2)
As10.38970 (6)0.50000.67693 (11)0.00692 (16)
As20.11973 (5)0.33430 (3)0.76867 (8)0.00892 (14)
O10.5206 (4)0.2480 (2)0.7535 (6)0.0219 (8)
O20.2686 (3)0.3079 (2)0.7525 (6)0.0173 (7)
O30.2608 (5)0.50000.7550 (8)0.0097 (9)
O40.1460 (3)0.40124 (19)0.9821 (6)0.0136 (6)
O50.00000.3884 (3)0.50000.0133 (9)
O60.5077 (3)0.41858 (19)0.7766 (6)0.0126 (6)
O70.2869 (5)0.50000.3808 (8)0.0193 (11)
Na1A0.1740 (18)0.1692 (4)0.5940 (15)0.032 (2)0.72 (3)
Na1B0.225 (3)0.1686 (13)0.617 (4)0.032 (2)0.28 (3)
Na2A0.0488 (3)0.50000.2908 (8)0.0353 (11)0.940 (6)
Na2B−0.021 (6)0.5000−0.054 (13)0.0353 (11)0.060 (6)
U11U22U33U12U13U23
Co10.0097 (4)0.0075 (4)0.0088 (4)0.0000.0037 (3)0.000
Co20.0094 (4)0.0105 (4)0.0067 (4)0.0000.0038 (3)0.000
As10.0077 (3)0.0073 (3)0.0047 (3)0.0000.0023 (2)0.000
As20.0091 (2)0.0071 (2)0.0073 (2)−0.00090 (15)0.00172 (18)0.00007 (17)
O10.0297 (19)0.0157 (17)0.015 (2)0.0132 (15)0.0073 (16)−0.0024 (15)
O20.0091 (14)0.0211 (18)0.0157 (18)0.0020 (13)0.0018 (14)−0.0030 (14)
O30.0093 (19)0.015 (2)0.008 (2)0.0000.0072 (18)0.000
O40.0163 (14)0.0152 (15)0.0089 (15)−0.0044 (13)0.0061 (13)−0.0053 (14)
O50.0128 (19)0.011 (2)0.008 (2)0.000−0.0008 (18)0.000
O60.0114 (13)0.0098 (14)0.0158 (16)0.0014 (12)0.0064 (13)0.0017 (13)
O70.014 (2)0.040 (3)0.004 (2)0.0000.005 (2)0.000
Na1A0.047 (6)0.0192 (12)0.021 (2)0.012 (3)0.011 (4)−0.0034 (12)
Na1B0.047 (6)0.0192 (12)0.021 (2)0.012 (3)0.011 (4)−0.0034 (12)
Na2A0.0179 (15)0.0196 (17)0.059 (3)0.0000.0126 (18)0.000
Na2B0.0179 (15)0.0196 (17)0.059 (3)0.0000.0126 (18)0.000
Co1—O12.108 (3)Na1A—O6viii2.621 (11)
Co1—O1i2.108 (3)Na1A—O2viii2.646 (11)
Co1—O22.141 (3)Na1A—O1vii2.682 (13)
Co1—O2i2.141 (3)Na1A—O4ix2.694 (10)
Co1—O62.177 (3)Na1A—O7viii2.782 (7)
Co1—O6i2.177 (3)Na1A—O6vii2.936 (13)
Co2—O3ii1.978 (4)Na1B—O22.39 (2)
Co2—O72.003 (5)Na1B—O2viii2.47 (2)
Co2—O4ii2.126 (3)Na1B—O4ix2.53 (2)
Co2—O4iii2.126 (3)Na1B—O7viii2.75 (2)
Co2—O6iv2.201 (3)Na1B—O1viii2.83 (2)
Co2—O6v2.201 (3)Na1B—O6viii2.87 (2)
As1—O31.669 (4)Na2A—O72.257 (5)
As1—O71.671 (5)Na2A—O52.480 (4)
As1—O6vi1.704 (3)Na2A—O5x2.480 (4)
As1—O61.704 (3)Na2A—O4xi2.501 (4)
As2—O1vii1.670 (3)Na2A—O4x2.501 (4)
As2—O21.673 (3)Na2B—O4xi2.27 (6)
As2—O41.680 (3)Na2B—O4x2.27 (6)
As2—O51.790 (2)Na2B—O4ii2.30 (5)
Na1A—O22.475 (9)Na2B—O4iii2.30 (5)
Na1A—O1viii2.540 (12)Na2B—O7xii2.51 (5)
O1—Co1—O1i110.2 (2)O3ii—Co2—O6iv94.87 (13)
O1—Co1—O282.94 (14)O7—Co2—O6iv95.48 (14)
O1i—Co1—O290.01 (14)O4ii—Co2—O6iv93.63 (12)
O1—Co1—O2i90.01 (14)O4iii—Co2—O6iv167.77 (12)
O1i—Co1—O2i82.94 (14)O3ii—Co2—O6v94.87 (13)
O2—Co1—O2i167.7 (2)O7—Co2—O6v95.48 (14)
O1—Co1—O681.33 (13)O4ii—Co2—O6v167.77 (12)
O1i—Co1—O6168.19 (14)O4iii—Co2—O6v93.63 (12)
O2—Co1—O689.07 (13)O6iv—Co2—O6v74.22 (16)
O2i—Co1—O699.88 (13)O3—As1—O7101.9 (2)
O1—Co1—O6i168.19 (14)O3—As1—O6vi115.27 (14)
O1i—Co1—O6i81.33 (13)O7—As1—O6vi111.14 (15)
O2—Co1—O6i99.88 (13)O3—As1—O6115.27 (14)
O2i—Co1—O6i89.07 (13)O7—As1—O6111.14 (14)
O6—Co1—O6i87.23 (18)O6vi—As1—O6102.4 (2)
O3ii—Co2—O7167.01 (18)O1vii—As2—O2111.18 (19)
O3ii—Co2—O4ii87.38 (12)O1vii—As2—O4114.04 (17)
O7—Co2—O4ii84.15 (12)O2—As2—O4116.98 (16)
O3ii—Co2—O4iii87.38 (12)O1vii—As2—O5103.39 (16)
O7—Co2—O4iii84.15 (12)O2—As2—O5106.19 (13)
O4ii—Co2—O4iii98.49 (17)O4—As2—O5103.43 (16)
Cationq(i).sof(i)V(i)Q(i)CN(i)ECoN(i)dmoy(i)dmed(i)
Co12.001.872.0165.972.142.14
Co22.002.052.0365.622.112.08
As15.004.995.1343.991.691.69
As25.004.934.9443.891.701.69
Na1A0.720.650.7287.332.672.63
Na1B0.280.250.2785.722.742.58
Na2A0.941.020.9275.522.582.45
Na2B0.060.070.0664.782.452.31
Table 1

Bond-valence-sum and charge distribution analysis

Cation q(isof(i) V(i) Q(i)CN(i)ECoN(i) d moy(i) d med(i)
Co12.001.872.0165.972.142.14
Co22.002.052.0365.622.112.08
As15.004.995.1343.991.691.69
As25.004.934.9443.891.701.69
Na1A 0.720.650.7287.332.672.63
Na1B 0.280.250.2785.722.742.58
Na2A 0.941.020.9275.522.582.45
Na2B 0.060.070.0664.782.452.31

q(i) = formal oxidation number; sof(i) = site occupation factor; d moy(i) = arithmetic average distance (Å); d med(i) = weighted average distance (Å); sodium CNS for d(Na—O)max = 3.10 Å; σcat = dispersion factor on cationic charges measuring the deviation of the computed charges (Q) with respect to the formal oxidation numbers; σcat = [Σ(q −Q )2/N−1]1/2 = 0.055.

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1.  Charge distribution as a tool to investigate structural details. II. Extension to hydrogen bonds, distorted and hetero-ligand polyhedra.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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  3 in total

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-30

2.  β-Xenophyllite-type Na4Li0.62Co5.67Al0.71(AsO4)6.

Authors:  Riadh Marzouki; Wafa Frigui; Abderrahmen Guesmi; Mohamed Faouzi Zid; Ahmed Driss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-21

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-26
  3 in total

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