Literature DB >> 22806785

A rapid and cost effective method in purifying small RNA.

Marimuthu Citartan1, Soo-Choon Tan, Thean-Hock Tang.   

Abstract

Purification of RNA fragments from a complex mixture is a very common technique, and requires consideration of the time, cost, purity and yield of the purified RNA fragments. This study describes the fastest method of purifying small RNA with the lowest cost possible, without compromizing the yield and purity. The technique describes the purification of small RNA from polyacrylamide gel, resulting in a good yield of small RNA with minimum experimental steps in avoiding degradation of the RNA, obviating the use of ethidium bromide and phenol-chloroform extraction, as well as siliconized glass wools to remove the polyacrylamide gel particles. The purified small RNA is suitable for a wide variety of applications such as ligation, end labelling with radio isotope, RT-PCR (Reverse Transcriptase-PCR), Northern blotting, experimental RNomics study and also Systematic Evolution of Ligands by Exponential Enrichment (SELEX).

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Year:  2011        PMID: 22806785     DOI: 10.1007/s11274-011-0797-0

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  17 in total

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Authors:  Thean Hock Tang; Timofey S Rozhdestvensky; Béatrice Clouet d'Orval; Marie-Line Bortolin; Harald Huber; Bruno Charpentier; Christiane Branlant; Jean-Pierre Bachellerie; Jürgen Brosius; Alexander Hüttenhofer
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

2.  COMPLEX FORMATION WITH DNA AND INHIBITION OF ESCHERICHIA COLI RNA POLYMERASE BY ETHIDIUM BROMIDE.

Authors:  M J WARING
Journal:  Biochim Biophys Acta       Date:  1964-06-22

3.  The effects of antimicrobial agents on deoxyribonucleic acid polymerase.

Authors:  W H Elliott
Journal:  Biochem J       Date:  1963-03       Impact factor: 3.857

4.  Construction of small RNA cDNA libraries for deep sequencing.

Authors:  Cheng Lu; Blake C Meyers; Pamela J Green
Journal:  Methods       Date:  2007-10       Impact factor: 3.608

5.  A simple method for subcloning DNA fragments from gel slices.

Authors:  D M Heery; F Gannon; R Powell
Journal:  Trends Genet       Date:  1990-06       Impact factor: 11.639

6.  Hydrolysis of single-stranded RNA in aqueous solutions--effect on quantitative hybridizations.

Authors:  J Tenhunen
Journal:  Mol Cell Probes       Date:  1989-12       Impact factor: 2.365

7.  Rapid electroelution of nucleic acids from agarose and acrylamide gels.

Authors:  H P Zassenhaus; R A Butow; Y P Hannon
Journal:  Anal Biochem       Date:  1982-09-01       Impact factor: 3.365

8.  Impact of RNA degradation on gene expression profiling.

Authors:  Lennart Opitz; Gabriela Salinas-Riester; Marian Grade; Klaus Jung; Peter Jo; Georg Emons; B Michael Ghadimi; Tim Beissbarth; Jochen Gaedcke
Journal:  BMC Med Genomics       Date:  2010-08-09       Impact factor: 3.063

9.  Hazardous organic compounds in urban municipal solid waste from a developing country.

Authors:  M Swati; T Rema; Kurian Joseph
Journal:  J Hazard Mater       Date:  2008-03-08       Impact factor: 10.588

10.  High-affinity oligonucleotide ligands to human IgE inhibit binding to Fc epsilon receptor I.

Authors:  T W Wiegand; P B Williams; S C Dreskin; M H Jouvin; J P Kinet; D Tasset
Journal:  J Immunol       Date:  1996-07-01       Impact factor: 5.422

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  1 in total

1.  Reverse Electrochemical Sensing of FLT3-ITD Mutations in Acute Myeloid Leukemia Using Gold Sputtered ZnO-Nanorod Configured DNA Biosensors.

Authors:  Ramesh Thevendran; Kai Loong Foo; Mohd Hazwan Hussin; Emmanuel Jairaj Moses; Marimuthu Citartan; Haarindraprasad Rajintra Prasad; Solayappan Maheswaran
Journal:  Biosensors (Basel)       Date:  2022-03-10
  1 in total

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