Literature DB >> 22802146

Systems genetics: a novel approach to dissect the genetic basis of osteoporosis.

Charles R Farber1.   

Abstract

From the early 1990s to the middle of the last decade, the search for genes influencing osteoporosis proved difficult with few successes. However, over the last 5 years this has begun to change with the introduction of genome-wide association (GWA) studies. In this short period of time, GWA studies have significantly accelerated the pace of gene discovery, leading to the identification of nearly 100 independent associations for osteoporosis-related traits. However, GWA does not specifically pinpoint causal genes or provide functional context for associations. Thus, there is a need for approaches that provide systems-level insight on how associated variants influence cellular function, downstream gene networks, and ultimately disease. In this review we discuss the emerging field of "systems genetics" and how it is being used in combination with and independent of GWA to improve our understanding of the molecular mechanisms involved in bone fragility.

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Year:  2012        PMID: 22802146      PMCID: PMC3422742          DOI: 10.1007/s11914-012-0112-5

Source DB:  PubMed          Journal:  Curr Osteoporos Rep        ISSN: 1544-1873            Impact factor:   5.096


  63 in total

1.  Integrating genotypic and expression data in a segregating mouse population to identify 5-lipoxygenase as a susceptibility gene for obesity and bone traits.

Authors:  Margarete Mehrabian; Hooman Allayee; Jirina Stockton; Pek Yee Lum; Thomas A Drake; Lawrence W Castellani; Michael Suh; Christopher Armour; Stephen Edwards; John Lamb; Aldons J Lusis; Eric E Schadt
Journal:  Nat Genet       Date:  2005-10-02       Impact factor: 38.330

2.  An integrative genomics approach to infer causal associations between gene expression and disease.

Authors:  Eric E Schadt; John Lamb; Xia Yang; Jun Zhu; Steve Edwards; Debraj Guhathakurta; Solveig K Sieberts; Stephanie Monks; Marc Reitman; Chunsheng Zhang; Pek Yee Lum; Amy Leonardson; Rolf Thieringer; Joseph M Metzger; Liming Yang; John Castle; Haoyuan Zhu; Shera F Kash; Thomas A Drake; Alan Sachs; Aldons J Lusis
Journal:  Nat Genet       Date:  2005-06-19       Impact factor: 38.330

3.  Wnt9a signaling is required for joint integrity and regulation of Ihh during chondrogenesis.

Authors:  Daniela Später; Theo P Hill; Roderick J O'sullivan; Michaela Gruber; David A Conner; Christine Hartmann
Journal:  Development       Date:  2006-07-03       Impact factor: 6.868

Review 4.  Molecular networks as sensors and drivers of common human diseases.

Authors:  Eric E Schadt
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

Review 5.  Insights into the genetics of osteoporosis from recent genome-wide association studies.

Authors:  Hou-Feng Zheng; Timothy D Spector; J Brent Richards
Journal:  Expert Rev Mol Med       Date:  2011-08-26       Impact factor: 5.600

6.  Genetics and beyond--the transcriptome of human monocytes and disease susceptibility.

Authors:  Tanja Zeller; Philipp Wild; Silke Szymczak; Maxime Rotival; Arne Schillert; Raphaele Castagne; Seraya Maouche; Marine Germain; Karl Lackner; Heidi Rossmann; Medea Eleftheriadis; Christoph R Sinning; Renate B Schnabel; Edith Lubos; Detlev Mennerich; Werner Rust; Claire Perret; Carole Proust; Viviane Nicaud; Joseph Loscalzo; Norbert Hübner; David Tregouet; Thomas Münzel; Andreas Ziegler; Laurence Tiret; Stefan Blankenberg; François Cambien
Journal:  PLoS One       Date:  2010-05-18       Impact factor: 3.240

7.  Association of JAG1 with bone mineral density and osteoporotic fractures: a genome-wide association study and follow-up replication studies.

Authors:  Annie W C Kung; Su-Mei Xiao; Stacey Cherny; Gloria H Y Li; Yi Gao; Gloria Tso; Kam S Lau; Keith D K Luk; Jian-min Liu; Bin Cui; Min-Jia Zhang; Zhen-lin Zhang; Jin-wei He; Hua Yue; Wia-bo Xia; Lian-mei Luo; Shu-li He; Douglas P Kiel; David Karasik; Yi-Hsiang Hsu; L Adrienne Cupples; Serkalem Demissie; Unnur Styrkarsdottir; Bjarni V Halldorsson; Gunnar Sigurdsson; Unnur Thorsteinsdottir; Kari Stefansson; J Brent Richards; Guangju Zhai; Nicole Soranzo; Ana Valdes; Tim D Spector; Pak C Sham
Journal:  Am J Hum Genet       Date:  2010-01-21       Impact factor: 11.025

Review 8.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

9.  A twist code determines the onset of osteoblast differentiation.

Authors:  Peter Bialek; Britt Kern; Xiangli Yang; Marijke Schrock; Drazen Sosic; Nancy Hong; Hua Wu; Kai Yu; David M Ornitz; Eric N Olson; Monica J Justice; Gerard Karsenty
Journal:  Dev Cell       Date:  2004-03       Impact factor: 12.270

10.  Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Authors:  Paul J Gardina; Tyson A Clark; Brian Shimada; Michelle K Staples; Qing Yang; James Veitch; Anthony Schweitzer; Tarif Awad; Charles Sugnet; Suzanne Dee; Christopher Davies; Alan Williams; Yaron Turpaz
Journal:  BMC Genomics       Date:  2006-12-27       Impact factor: 3.969

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  8 in total

1.  Integrative analysis of GWASs, human protein interaction, and gene expression identified gene modules associated with BMDs.

Authors:  Hao He; Lei Zhang; Jian Li; Yu-Ping Wang; Ji-Gang Zhang; Jie Shen; Yan-Fang Guo; Hong-Wen Deng
Journal:  J Clin Endocrinol Metab       Date:  2014-08-13       Impact factor: 5.958

2.  Socioeconomic status and bone mineral density in adults by race/ethnicity and gender: the Louisiana osteoporosis study.

Authors:  Y Du; L-J Zhao; Q Xu; K-H Wu; H-W Deng
Journal:  Osteoporos Int       Date:  2017-02-24       Impact factor: 4.507

3.  Integration of summary data from GWAS and eQTL studies identified novel causal BMD genes with functional predictions.

Authors:  Xiang-He Meng; Xiang-Ding Chen; Jonathan Greenbaum; Qin Zeng; Sheng-Lan You; Hong-Mei Xiao; Li-Jun Tan; Hong-Wen Deng
Journal:  Bone       Date:  2018-05-12       Impact factor: 4.398

4.  Racial and gender differences in the relationship between sarcopenia and bone mineral density among older adults.

Authors:  H-T Ning; Y Du; L-J Zhao; Q Tian; H Feng; H-W Deng
Journal:  Osteoporos Int       Date:  2020-11-24       Impact factor: 4.507

Review 5.  Twelve years of GWAS discoveries for osteoporosis and related traits: advances, challenges and applications.

Authors:  Xiaowei Zhu; Weiyang Bai; Houfeng Zheng
Journal:  Bone Res       Date:  2021-04-29       Impact factor: 13.567

6.  Association of the I264T variant in the sulfide quinone reductase-like (SQRDL) gene with osteoporosis in Korean postmenopausal women.

Authors:  Hyun-Seok Jin; Jeonghyun Kim; Sangwook Park; Eunkuk Park; Bo-Young Kim; Vit-Na Choi; Young-Hyun Yoo; Bom-Taeck Kim; Seon-Yong Jeong
Journal:  PLoS One       Date:  2015-08-10       Impact factor: 3.240

Review 7.  Genome-wide approaches for identifying genetic risk factors for osteoporosis.

Authors:  Shuyan Wu; Yongjun Liu; Lei Zhang; Yingying Han; Yong Lin; Hong-Wen Deng
Journal:  Genome Med       Date:  2013-05-29       Impact factor: 11.117

Review 8.  Genome-wide Association Studies for Osteoporosis: A 2013 Update.

Authors:  Yong-Jun Liu; Lei Zhang; Christopher J Papasian; Hong-Wen Deng
Journal:  J Bone Metab       Date:  2014-05-31
  8 in total

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