Literature DB >> 22800191

Evidence for the formation of a Mo-H intermediate in the catalytic cycle of formate dehydrogenase.

Matteo Tiberti1, Elena Papaleo, Nino Russo, Luca De Gioia, Giuseppe Zampella.   

Abstract

DFT/BP86/TZVP and DFT/B3LYP/TZVP have been used to investigate systematically the reaction pathways associated with the H-transfer step, which is the rate-determining step of the reaction HCOO(-) ⇄ CO(2) + H(+) + 2e(-), as catalyzed by metalloenzyme formate dehydrogenase (FDH). Actually, the energetics associated with the transfer from formate to all H (proton or hydride) acceptors that are present within the FDH active site have been sampled. This study points to a viable intimate mechanism in which the metal center mediates H transfer from formate to the final acceptor, i.e. a selenocysteine residue. The Mo-based reaction pathway, consisting of a β-H elimination to metal with concerted decarboxylation, turned out to be favored over previously proposed routes in which proton transfer occurs directly from HCOO(-) to selenocysteine. The proposed reaction pathway is reminiscent of the key step of metal-based catalysis of the water-gas shift reaction.

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Year:  2012        PMID: 22800191     DOI: 10.1021/ic300863d

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  8 in total

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Authors:  Rong-Zhen Liao
Journal:  J Biol Inorg Chem       Date:  2012-11-25       Impact factor: 3.358

2.  Reaction mechanism of formate dehydrogenase studied by computational methods.

Authors:  Geng Dong; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2018-09-01       Impact factor: 3.358

Review 3.  Molybdenum and tungsten-dependent formate dehydrogenases.

Authors:  Luisa B Maia; José J G Moura; Isabel Moura
Journal:  J Biol Inorg Chem       Date:  2014-12-05       Impact factor: 3.358

Review 4.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

5.  Dehydrogenation of formic acid by Ir-bisMETAMORPhos complexes: experimental and computational insight into the role of a cooperative ligand.

Authors:  Sander Oldenhof; Martin Lutz; Bas de Bruin; Jarl Ivar van der Vlugt; Joost N H Reek
Journal:  Chem Sci       Date:  2014-10-22       Impact factor: 9.825

Review 6.  Biomimetic Approach to CO2 Reduction.

Authors:  Ilaria Gamba
Journal:  Bioinorg Chem Appl       Date:  2018-08-01       Impact factor: 7.778

7.  Energetics for CO2 Reduction by Molybdenum-Containing Formate Dehydrogenase.

Authors:  Per E M Siegbahn
Journal:  J Phys Chem B       Date:  2022-02-22       Impact factor: 2.991

8.  Oxidation-State-Dependent Binding Properties of the Active Site in a Mo-Containing Formate Dehydrogenase.

Authors:  William E Robinson; Arnau Bassegoda; Erwin Reisner; Judy Hirst
Journal:  J Am Chem Soc       Date:  2017-07-17       Impact factor: 15.419

  8 in total

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