Literature DB >> 22798939

(2E)-2-(Thio-phen-2-yl-methyl-idene)-1,2,3,4-tetra-hydro-naphthalen-1-one.

Abdullah M Asiri, Hassan M Faidallah, Khalid A Alamry, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(15)H(12)OS, the cyclo-hexene ring has a twisted boat conformation with the C atom between the ketone and methyl-ene atom and this methyl-ene C atom lying 0.280 (3) and 0.760 (3) Å, respectively, from the plane through the remaining four atoms (r.m.s. deviation = 0.004 Å). The dihedral angle between the benzene and thio-phene rings [21.64 (9)°] indicates an overall twist in the mol-ecule. The thio-phene S and ketone O atoms are anti, an orientation that allows the close approach of these atoms [3.3116 (17) Å] in the crystal structure and which leads to the formation of helical supra-molecular chains along the c axis.

Entities:  

Year:  2012        PMID: 22798939      PMCID: PMC3394074          DOI: 10.1107/S1600536812029169

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the activity of related species developed for the treatment of Chagas disease, see: Vera-DiVaio et al. (2009 ▶). For a related structure, see: Asiri et al. (2012 ▶).

Experimental

Crystal data

C15H12OS M = 240.31 Orthorhombic, a = 24.7989 (10) Å b = 3.9976 (2) Å c = 11.3163 (5) Å V = 1121.85 (9) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 100 K 0.35 × 0.30 × 0.25 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.812, T max = 1.000 7054 measured reflections 2528 independent reflections 2383 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.097 S = 1.03 2528 reflections 154 parameters 1 restraint H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 1171 Friedel pairs Flack parameter: 0.07 (10) Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812029169/gg2087sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029169/gg2087Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029169/gg2087Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12OSDx = 1.423 Mg m3
Mr = 240.31Melting point: 351 K
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 3882 reflections
a = 24.7989 (10) Åθ = 2.4–27.5°
b = 3.9976 (2) ŵ = 0.27 mm1
c = 11.3163 (5) ÅT = 100 K
V = 1121.85 (9) Å3Prism, light-brown
Z = 40.35 × 0.30 × 0.25 mm
F(000) = 504
Agilent SuperNova Dual diffractometer with an Atlas detector2528 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2383 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.4°
ω scanh = −32→23
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −5→4
Tmin = 0.812, Tmax = 1.000l = −14→14
7054 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.097w = 1/[σ2(Fo2) + (0.0596P)2 + 0.206P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
2528 reflectionsΔρmax = 0.32 e Å3
154 parametersΔρmin = −0.25 e Å3
1 restraintAbsolute structure: Flack (1983), 1171 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.07 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.538955 (17)0.26862 (11)0.50161 (7)0.01740 (13)
O10.36843 (6)0.5071 (4)0.19698 (15)0.0251 (4)
C10.59800 (8)0.0731 (5)0.4638 (2)0.0201 (4)
H10.62760.04450.51610.024*
C20.59738 (8)−0.0357 (5)0.3506 (2)0.0201 (4)
H20.6268−0.14800.31430.024*
C30.54817 (8)0.0355 (5)0.2914 (2)0.0173 (4)
H30.5412−0.02490.21170.021*
C40.51135 (8)0.2025 (5)0.36246 (19)0.0153 (4)
C50.45890 (8)0.3086 (5)0.32082 (19)0.0152 (4)
H50.45190.25710.24030.018*
C60.41829 (8)0.4681 (4)0.37662 (18)0.0149 (4)
C70.36964 (8)0.5503 (5)0.30417 (19)0.0157 (4)
C80.32189 (8)0.6897 (4)0.36676 (19)0.0149 (4)
C90.27955 (8)0.8271 (5)0.3005 (2)0.0170 (4)
H90.28240.83820.21680.020*
C100.23379 (8)0.9464 (5)0.35577 (19)0.0177 (4)
H100.20531.03890.31030.021*
C110.22952 (8)0.9309 (5)0.47876 (19)0.0179 (4)
H110.19791.01000.51710.022*
C120.27162 (9)0.7996 (5)0.5445 (2)0.0176 (4)
H120.26880.79200.62820.021*
C130.31817 (7)0.6783 (4)0.4900 (2)0.0140 (4)
C140.36339 (8)0.5298 (5)0.56230 (18)0.0149 (4)
H14A0.35700.28720.57280.018*
H14B0.36370.63480.64150.018*
C150.41813 (7)0.5824 (4)0.5033 (2)0.0150 (4)
H15A0.42760.82280.50640.018*
H15B0.44600.45730.54770.018*
U11U22U33U12U13U23
S10.0148 (2)0.0213 (2)0.0160 (2)0.00044 (16)−0.0005 (2)−0.0013 (2)
O10.0217 (9)0.0398 (9)0.0137 (8)0.0081 (6)−0.0021 (6)−0.0022 (7)
C10.0132 (9)0.0204 (9)0.0267 (12)−0.0002 (7)−0.0007 (8)0.0033 (8)
C20.0145 (10)0.0212 (10)0.0247 (12)0.0020 (7)0.0048 (9)0.0030 (9)
C30.0195 (10)0.0168 (9)0.0156 (10)−0.0027 (7)−0.0009 (8)0.0041 (8)
C40.0174 (10)0.0145 (8)0.0139 (10)−0.0021 (7)−0.0012 (8)0.0017 (8)
C50.0164 (10)0.0178 (9)0.0113 (10)−0.0016 (7)−0.0012 (7)0.0011 (8)
C60.0162 (9)0.0147 (9)0.0137 (10)−0.0011 (7)−0.0007 (8)0.0028 (8)
C70.0156 (10)0.0168 (9)0.0147 (10)0.0009 (7)−0.0004 (8)0.0008 (8)
C80.0143 (9)0.0138 (8)0.0167 (10)−0.0021 (7)−0.0014 (8)0.0012 (8)
C90.0182 (10)0.0175 (9)0.0153 (10)−0.0021 (8)−0.0019 (8)0.0016 (8)
C100.0130 (9)0.0177 (9)0.0226 (12)−0.0019 (7)−0.0046 (8)0.0028 (8)
C110.0150 (9)0.0172 (9)0.0216 (12)−0.0008 (7)0.0035 (8)0.0002 (7)
C120.0173 (10)0.0186 (10)0.0169 (10)−0.0033 (7)0.0032 (8)0.0012 (8)
C130.0155 (9)0.0119 (8)0.0147 (10)−0.0029 (6)−0.0001 (8)0.0007 (8)
C140.0166 (9)0.0152 (9)0.0129 (10)−0.0012 (7)0.0010 (8)0.0001 (8)
C150.0138 (8)0.0187 (8)0.0125 (9)0.0005 (7)−0.0006 (9)−0.0001 (9)
S1—C11.714 (2)C8—C91.403 (3)
S1—C41.737 (2)C9—C101.381 (3)
O1—C71.226 (3)C9—H90.9500
C1—C21.353 (3)C10—C111.397 (3)
C1—H10.9500C10—H100.9500
C2—C31.421 (3)C11—C121.385 (3)
C2—H20.9500C11—H110.9500
C3—C41.388 (3)C12—C131.396 (3)
C3—H30.9500C12—H120.9500
C4—C51.447 (3)C13—C141.510 (3)
C5—C61.349 (3)C14—C151.527 (3)
C5—H50.9500C14—H14A0.9900
C6—C71.495 (3)C14—H14B0.9900
C6—C151.504 (3)C15—H15A0.9900
C7—C81.488 (3)C15—H15B0.9900
C8—C131.399 (3)
C1—S1—C492.35 (10)C10—C9—H9119.7
C2—C1—S1111.91 (16)C8—C9—H9119.7
C2—C1—H1124.0C9—C10—C11119.89 (19)
S1—C1—H1124.0C9—C10—H10120.1
C1—C2—C3113.1 (2)C11—C10—H10120.1
C1—C2—H2123.5C12—C11—C10119.65 (19)
C3—C2—H2123.5C12—C11—H11120.2
C4—C3—C2112.9 (2)C10—C11—H11120.2
C4—C3—H3123.6C11—C12—C13121.2 (2)
C2—C3—H3123.6C11—C12—H12119.4
C3—C4—C5122.9 (2)C13—C12—H12119.4
C3—C4—S1109.82 (15)C12—C13—C8118.9 (2)
C5—C4—S1127.21 (16)C12—C13—C14120.8 (2)
C6—C5—C4131.1 (2)C8—C13—C14120.26 (17)
C6—C5—H5114.5C13—C14—C15111.67 (17)
C4—C5—H5114.5C13—C14—H14A109.3
C5—C6—C7116.72 (18)C15—C14—H14A109.3
C5—C6—C15126.27 (18)C13—C14—H14B109.3
C7—C6—C15116.97 (16)C15—C14—H14B109.3
O1—C7—C8120.28 (18)H14A—C14—H14B107.9
O1—C7—C6122.11 (18)C6—C15—C14112.16 (16)
C8—C7—C6117.60 (18)C6—C15—H15A109.2
C13—C8—C9119.78 (19)C14—C15—H15A109.2
C13—C8—C7121.00 (18)C6—C15—H15B109.2
C9—C8—C7119.20 (19)C14—C15—H15B109.2
C10—C9—C8120.5 (2)H15A—C15—H15B107.9
C4—S1—C1—C20.54 (16)C6—C7—C8—C9168.28 (17)
S1—C1—C2—C3−0.5 (2)C13—C8—C9—C10−1.1 (3)
C1—C2—C3—C40.2 (3)C7—C8—C9—C10177.44 (17)
C2—C3—C4—C5178.49 (17)C8—C9—C10—C110.1 (3)
C2—C3—C4—S10.2 (2)C9—C10—C11—C120.8 (3)
C1—S1—C4—C3−0.40 (15)C10—C11—C12—C13−0.8 (3)
C1—S1—C4—C5−178.62 (18)C11—C12—C13—C8−0.2 (3)
C3—C4—C5—C6179.2 (2)C11—C12—C13—C14−178.85 (17)
S1—C4—C5—C6−2.8 (3)C9—C8—C13—C121.1 (3)
C4—C5—C6—C7177.95 (19)C7—C8—C13—C12−177.36 (16)
C4—C5—C6—C150.4 (3)C9—C8—C13—C14179.76 (16)
C5—C6—C7—O1−7.2 (3)C7—C8—C13—C141.3 (3)
C15—C6—C7—O1170.53 (18)C12—C13—C14—C15−150.02 (17)
C5—C6—C7—C8172.98 (17)C8—C13—C14—C1531.4 (2)
C15—C6—C7—C8−9.3 (2)C5—C6—C15—C14−140.98 (19)
O1—C7—C8—C13166.95 (18)C7—C6—C15—C1441.5 (2)
C6—C7—C8—C13−13.2 (3)C13—C14—C15—C6−51.7 (2)
O1—C7—C8—C9−11.5 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, antichagasic in vitro evaluation, cytotoxicity assays, molecular modeling and SAR/QSAR studies of a 2-phenyl-3-(1-phenyl-1H-pyrazol-4-yl)-acrylic acid benzylidene-carbohydrazide series.

Authors:  Maria A F Vera-Divaio; Antônio C C Freitas; Helena C Castro; Sérgio de Albuquerque; Lucio M Cabral; Carlos R Rodrigues; Magaly G Albuquerque; Rita C A Martins; Maria G M O Henriques; Luiza R S Dias
Journal:  Bioorg Med Chem       Date:  2008-11-05       Impact factor: 3.641

3.  2-[(E)-4-Meth-oxy-benzyl-idene]-1,2,3,4-tetra-hydro-naphthalen-1-one.

Authors:  Abdullah M Asiri; Hassan M Faidallah; Mohie E M Zayed; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-23
  3 in total

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