Literature DB >> 22798934

8-Methyl-2-oxo-4-(thio-phen-2-yl)-1,2,5,6,7,8-hexa-hydro-quinoline-3-carbonitrile.

Abdullah M Asiri, Hassan M Faidallah, Alaa Anwar Ahmad Saqer, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(15)H(14)N(2)OS, the pyridinone ring in the fused-ring system is nearly planar (r.m.s. deviation = 0.011 Å) and the cyclo-hexene ring has a twisted half-boat conformation with the methyl-ene C atom adjacent to the methine C atom deviating by 0.592 (7) Å from the plane defined by the remaining five atoms (r.m.s. deviation = 0.108 Å). The thienyl ring is disordered over two almost coplanar positions of opposite orientation in a 0.649 (4):0.351 (4) ratio, and forms dihedral angles of 51.4 (3) (major component) and 54.2 (3)°, respectively, with the pyridinone ring. In the crystal, inversion-related mol-ecules associate via an eight-membered {⋯HNCO}(2) synthon and these are linked into a linear supra-molecular chain along the a axis by weak π-π inter-actions that occur between centrosymmetrically related pyridinone rings [centroid-centroid distance = 3.889 (2) Å].

Entities:  

Year:  2012        PMID: 22798934      PMCID: PMC3394069          DOI: 10.1107/S160053681202836X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the cardiotonic and anti-inflammatory properties of this class of compounds, see: Behit & Baraka (2005 ▶); Girgis et al. (2007 ▶). For a related structure, see: Asiri et al. (2011 ▶).

Experimental

Crystal data

C15H14N2OS M = 270.34 Triclinic, a = 7.6443 (3) Å b = 9.6909 (5) Å c = 9.9852 (5) Å α = 67.003 (5)° β = 80.869 (4)° γ = 76.108 (4)° V = 659.26 (5) Å3 Z = 2 Mo Kα radiation μ = 0.24 mm−1 T = 100 K 0.30 × 0.20 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.798, T max = 1.000 9707 measured reflections 3041 independent reflections 2356 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.088 wR(F 2) = 0.230 S = 1.07 3041 reflections 185 parameters 33 restraints H-atom parameters constrained Δρmax = 1.02 e Å−3 Δρmin = −0.78 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681202836X/xu5572sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202836X/xu5572Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202836X/xu5572Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2OSZ = 2
Mr = 270.34F(000) = 284
Triclinic, P1Dx = 1.362 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.6443 (3) ÅCell parameters from 3729 reflections
b = 9.6909 (5) Åθ = 2.3–27.5°
c = 9.9852 (5) ŵ = 0.24 mm1
α = 67.003 (5)°T = 100 K
β = 80.869 (4)°Plate, yellow
γ = 76.108 (4)°0.30 × 0.20 × 0.05 mm
V = 659.26 (5) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector3041 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2356 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.031
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.3°
ω scanh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −12→12
Tmin = 0.798, Tmax = 1.000l = −12→12
9707 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.088Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.230H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0899P)2 + 1.5187P] where P = (Fo2 + 2Fc2)/3
3041 reflections(Δ/σ)max = 0.001
185 parametersΔρmax = 1.02 e Å3
33 restraintsΔρmin = −0.78 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.8432 (4)0.6552 (5)0.4105 (4)0.0607 (13)
N10.7871 (4)0.4615 (4)0.6240 (4)0.0359 (9)
H1n0.89840.41180.61600.043*
N20.4540 (5)0.9325 (4)0.3270 (4)0.0359 (9)
C10.9207 (6)0.2563 (6)0.9181 (5)0.0405 (11)
H1A1.00510.31020.84230.061*
H1B0.98470.15460.97650.061*
H1C0.87020.31440.98130.061*
C20.7691 (5)0.2402 (5)0.8473 (4)0.0303 (9)
H20.82460.17550.78840.036*
C30.6307 (6)0.1585 (5)0.9600 (5)0.0337 (10)
H3A0.56680.11200.91470.040*
H3B0.69410.07521.04220.040*
C40.4947 (6)0.2674 (5)1.0173 (5)0.0361 (10)
H4A0.55840.31541.06110.043*
H4B0.41210.21011.09450.043*
C50.3854 (5)0.3914 (5)0.8953 (4)0.0300 (9)
H5A0.30150.34580.86670.036*
H5B0.31200.47030.93180.036*
C60.5042 (5)0.4659 (4)0.7629 (4)0.0219 (7)
C70.6793 (5)0.3935 (4)0.7432 (4)0.0244 (8)
C80.7363 (5)0.6006 (5)0.5159 (5)0.0367 (11)
C90.5537 (5)0.6763 (4)0.5364 (4)0.0252 (8)
C100.4413 (5)0.6133 (4)0.6569 (4)0.0204 (7)
C110.4972 (5)0.8193 (5)0.4214 (4)0.0258 (8)
C120.2592 (5)0.7030 (4)0.6738 (4)0.0311 (9)
S10.0646 (2)0.6528 (2)0.7033 (2)0.0426 (7)0.649 (4)
S1'0.2014 (7)0.8647 (5)0.6683 (4)0.043*0.351 (4)
C130.260 (2)0.8772 (14)0.6570 (7)0.069 (4)0.649 (4)
H130.35590.93060.63990.082*0.649 (4)
C13'0.079 (2)0.627 (2)0.6905 (12)0.069*0.351 (4)
H13'0.07140.52850.69710.082*0.351 (4)
C140.0544 (12)0.9255 (9)0.6783 (8)0.0461 (18)0.649 (4)
H140.00311.02610.67520.055*0.649 (4)
C14'−0.072 (2)0.7647 (18)0.6921 (14)0.046*0.351 (4)
H14'−0.19610.76000.69920.055*0.351 (4)
C15−0.0505 (11)0.8293 (9)0.7006 (7)0.0432 (18)0.649 (4)
H15−0.17830.85450.71410.052*0.649 (4)
C15'−0.0217 (15)0.8881 (17)0.6833 (11)0.043*0.351 (4)
H15'−0.10230.97880.68520.052*0.351 (4)
U11U22U33U12U13U23
O10.0203 (15)0.071 (3)0.0354 (18)0.0116 (15)0.0094 (13)0.0234 (17)
N10.0157 (15)0.041 (2)0.0255 (18)0.0083 (14)0.0040 (13)0.0050 (15)
N20.0270 (18)0.035 (2)0.0275 (18)0.0013 (15)−0.0005 (14)0.0029 (15)
C10.026 (2)0.045 (3)0.031 (2)−0.0043 (18)−0.0045 (17)0.0055 (19)
C20.026 (2)0.027 (2)0.025 (2)0.0028 (15)−0.0006 (15)−0.0016 (16)
C30.031 (2)0.0230 (19)0.032 (2)−0.0038 (16)−0.0018 (17)0.0049 (16)
C40.030 (2)0.034 (2)0.025 (2)−0.0049 (17)0.0056 (16)0.0047 (17)
C50.0189 (18)0.030 (2)0.029 (2)−0.0054 (15)0.0050 (15)0.0000 (16)
C60.0180 (17)0.0239 (18)0.0205 (17)−0.0050 (13)−0.0003 (13)−0.0046 (14)
C70.0197 (17)0.0267 (19)0.0202 (17)−0.0022 (14)0.0012 (13)−0.0039 (15)
C80.0157 (18)0.045 (2)0.024 (2)0.0044 (16)0.0023 (14)0.0071 (18)
C90.0174 (17)0.0285 (19)0.0209 (18)−0.0013 (14)−0.0021 (13)−0.0013 (15)
C100.0151 (16)0.0236 (17)0.0213 (17)−0.0047 (13)−0.0007 (13)−0.0067 (14)
C110.0164 (17)0.031 (2)0.0221 (18)−0.0023 (14)0.0006 (13)−0.0034 (16)
C120.0238 (19)0.035 (2)0.0189 (18)0.0049 (16)0.0027 (14)−0.0018 (16)
S10.0090 (7)0.0483 (10)0.0447 (10)−0.0033 (6)−0.0002 (5)0.0084 (7)
C130.069 (4)0.069 (4)0.068 (4)−0.0132 (15)−0.0044 (13)−0.0250 (18)
C140.046 (2)0.045 (2)0.043 (2)−0.0018 (12)0.0006 (12)−0.0171 (13)
C150.040 (2)0.042 (2)0.041 (2)−0.0030 (12)0.0010 (12)−0.0128 (13)
O1—C81.246 (5)C6—C101.429 (5)
N1—C71.366 (5)C8—C91.436 (5)
N1—C81.371 (5)C9—C101.381 (5)
N1—H1n0.8800C9—C111.433 (5)
N2—C111.148 (5)C10—C121.477 (5)
C1—C21.516 (6)C12—S1'1.503 (5)
C1—H1A0.9800C12—S11.622 (4)
C1—H1B0.9800C12—C131.632 (13)
C1—H1C0.9800C12—C13'1.668 (17)
C2—C71.513 (5)S1—C151.717 (8)
C2—C31.530 (5)S1'—C15'1.656 (11)
C2—H21.0000C13—C141.537 (15)
C3—C41.510 (6)C13—H130.9500
C3—H3A0.9900C13'—C14'1.541 (18)
C3—H3B0.9900C13'—H13'0.9500
C4—C51.524 (6)C14—C151.304 (12)
C4—H4A0.9900C14—H140.9500
C4—H4B0.9900C14'—C15'1.309 (15)
C5—C61.511 (5)C14'—H14'0.9500
C5—H5A0.9900C15—H150.9500
C5—H5B0.9900C15'—H15'0.9500
C6—C71.377 (5)
C7—N1—C8125.4 (3)O1—C8—N1121.6 (4)
C7—N1—H1n117.3O1—C8—C9124.0 (4)
C8—N1—H1n117.3N1—C8—C9114.4 (3)
C2—C1—H1A109.5C10—C9—C11123.1 (3)
C2—C1—H1B109.5C10—C9—C8122.1 (3)
H1A—C1—H1B109.5C11—C9—C8114.9 (3)
C2—C1—H1C109.5C9—C10—C6119.8 (3)
H1A—C1—H1C109.5C9—C10—C12118.5 (3)
H1B—C1—H1C109.5C6—C10—C12121.7 (3)
C7—C2—C1111.3 (4)N2—C11—C9178.5 (4)
C7—C2—C3111.3 (3)C10—C12—S1'130.3 (4)
C1—C2—C3112.2 (4)C10—C12—S1129.1 (3)
C7—C2—H2107.3S1'—C12—S1100.5 (3)
C1—C2—H2107.3C10—C12—C13113.3 (6)
C3—C2—H2107.3S1—C12—C13117.5 (6)
C4—C3—C2111.4 (3)C10—C12—C13'119.2 (8)
C4—C3—H3A109.4S1'—C12—C13'110.3 (8)
C2—C3—H3A109.4C13—C12—C13'127.1 (11)
C4—C3—H3B109.4C12—S1—C1592.6 (4)
C2—C3—H3B109.4C12—S1'—C15'102.2 (6)
H3A—C3—H3B108.0C14—C13—C1295.8 (9)
C3—C4—C5110.8 (4)C14—C13—H13132.1
C3—C4—H4A109.5C12—C13—H13132.1
C5—C4—H4A109.5C14'—C13'—C1299.6 (13)
C3—C4—H4B109.5C14'—C13'—H13'130.2
C5—C4—H4B109.5C12—C13'—H13'130.2
H4A—C4—H4B108.1C15—C14—C13120.5 (8)
C6—C5—C4112.3 (3)C15—C14—H14119.8
C6—C5—H5A109.2C13—C14—H14119.8
C4—C5—H5A109.2C15'—C14'—C13'117.0 (15)
C6—C5—H5B109.2C15'—C14'—H14'121.5
C4—C5—H5B109.2C13'—C14'—H14'121.5
H5A—C5—H5B107.9C14—C15—S1113.6 (6)
C7—C6—C10118.1 (3)C14—C15—H15123.2
C7—C6—C5120.2 (3)S1—C15—H15123.2
C10—C6—C5121.7 (3)C14'—C15'—S1'110.9 (12)
N1—C7—C6120.2 (3)C14'—C15'—H15'124.6
N1—C7—C2114.9 (3)S1'—C15'—H15'124.6
C6—C7—C2124.9 (3)
C7—C2—C3—C4−42.7 (5)C9—C10—C12—S1'−51.3 (6)
C1—C2—C3—C482.7 (5)C6—C10—C12—S1'127.3 (4)
C2—C3—C4—C562.8 (5)C9—C10—C12—S1128.4 (4)
C3—C4—C5—C6−49.6 (5)C6—C10—C12—S1−52.9 (5)
C4—C5—C6—C719.3 (6)C9—C10—C12—C13−50.5 (4)
C4—C5—C6—C10−159.4 (4)C6—C10—C12—C13128.2 (4)
C8—N1—C7—C6−0.6 (7)C9—C10—C12—C13'123.6 (5)
C8—N1—C7—C2−179.4 (4)C6—C10—C12—C13'−57.7 (5)
C10—C6—C7—N1−0.8 (6)C10—C12—S1—C15−178.7 (4)
C5—C6—C7—N1−179.5 (4)S1'—C12—S1—C151.1 (3)
C10—C6—C7—C2177.8 (4)C13—C12—S1—C150.15 (17)
C5—C6—C7—C2−1.0 (6)C13'—C12—S1—C15−155 (3)
C1—C2—C7—N165.3 (5)C10—C12—S1'—C15'175.7 (5)
C3—C2—C7—N1−168.7 (4)S1—C12—S1'—C15'−4.1 (4)
C1—C2—C7—C6−113.3 (5)C13—C12—S1'—C15'173.1 (11)
C3—C2—C7—C612.6 (6)C13'—C12—S1'—C15'0.42 (19)
C7—N1—C8—O1179.8 (5)C10—C12—C13—C14178.9 (4)
C7—N1—C8—C90.7 (7)S1'—C12—C13—C14−3.2 (10)
O1—C8—C9—C10−178.3 (5)S1—C12—C13—C14−0.1 (2)
N1—C8—C9—C100.8 (7)C13'—C12—C13—C145.4 (5)
O1—C8—C9—C113.1 (7)C10—C12—C13'—C14'−175.7 (4)
N1—C8—C9—C11−177.9 (4)S1'—C12—C13'—C14'0.2 (2)
C11—C9—C10—C6176.3 (4)S1—C12—C13'—C14'25 (3)
C8—C9—C10—C6−2.2 (6)C13—C12—C13'—C14'−2.5 (5)
C11—C9—C10—C12−5.0 (6)C12—C13—C14—C150.0 (4)
C8—C9—C10—C12176.4 (4)C12—C13'—C14'—C15'−1.0 (5)
C7—C6—C10—C92.2 (5)C13—C14—C15—S10.1 (6)
C5—C6—C10—C9−179.1 (4)C12—S1—C15—C14−0.2 (4)
C7—C6—C10—C12−176.4 (4)C13'—C14'—C15'—S1'1.3 (6)
C5—C6—C10—C122.3 (6)C12—S1'—C15'—C14'−1.0 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O1i0.881.942.801 (4)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1n⋯O1i 0.881.942.801 (4)168

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Novel milrinone analogs of pyridine-3-carbonitrile derivatives as promising cardiotonic agents.

Authors:  Adnan A Bekhit; Azza M Baraka
Journal:  Eur J Med Chem       Date:  2005-07-22       Impact factor: 6.514

3.  Novel synthesis of [1]-benzothiepino[5,4-b]pyridine-3-carbonitriles and their anti-inflammatory properties.

Authors:  Adel S Girgis; Nawal Mishriky; Mohey Ellithey; Hanaa M Hosni; Hanaa Farag
Journal:  Bioorg Med Chem       Date:  2007-01-17       Impact factor: 3.641

4.  2-Oxo-4-(thio-phen-2-yl)-1,2,5,6-tetra-hydro-benzo[h]quinoline-3-carbonitrile.

Authors:  Abdullah M Asiri; Hassan M Faidallah; Abdulrahman O Al-Youbi; Khalid A Alamry; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  4 in total
  2 in total

1.  Crystal structures of 1-(4-chloro-phen-yl)-4-(4-methyl-phen-yl)-2,5-dioxo-1,2,5,6,7,8-hexa-hydro-quinoline-3-carb-oxy-lic acid and 4-(4-meth-oxy-phen-yl)-1-(4-methyl-phen-yl)-2,5-dioxo-1,2,5,6,7,8-hexa-hydro-quinoline-3-carbo-nitrile.

Authors:  Omyma A Abd Allah; Manpreet Kaur; Mehmet Akkurt; Shaaban K Mohamed; Asmaa H A Tamam; Sahar M I Elgarhy; Jerry P Jasinski
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-03-05

2.  4-(4-Bromo-phen-yl)-8-methyl-2-oxo-1,2,3,4,4a,5,6,7-octa-hydro-quinoline-3-carbonitrile.

Authors:  Abdullah M Asiri; Hassan M Faidallah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07
  2 in total

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