| Literature DB >> 22798911 |
Hatem A Abdel-Aziz, Tze Shyang Chia, Hoong-Kun Fun.
Abstract
The title compound, C(9)H(9)ClN(2)O, is close to planar (r.m.s. deviation for the non-H atoms = 0.0446 Å); it exists in a cis conformation with respect to the C=N double bond. In the crystal, the ketone O atom accepts both N-H⋯O and C-H⋯O hydrogen bonds, which leads to [010] infinite chains incorporating R(2) (1)(6) loops. The crystal structure also features a C-H⋯π inter-action.Entities:
Year: 2012 PMID: 22798911 PMCID: PMC3394046 DOI: 10.1107/S1600536812028759
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9ClN2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3613 reflections |
| θ = 2.5–30.0° | |
| µ = 0.36 mm−1 | |
| β = 101.158 (3)° | Block, yellow |
| 0.37 × 0.21 × 0.10 mm | |
| Bruker APEX DUO CCD diffractometer | 2722 independent reflections |
| Radiation source: fine-focus sealed tube | 2225 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.0°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 8906 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2722 reflections | Δρmax = 0.86 e Å−3 |
| 124 parameters | Δρmin = −0.37 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.008 (3) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | −0.00357 (7) | 0.01567 (4) | 0.18248 (4) | 0.02310 (16) | |
| O1 | 0.0096 (2) | 0.24567 (12) | 0.25220 (13) | 0.0275 (3) | |
| N1 | 0.1947 (2) | −0.08946 (14) | 0.41978 (16) | 0.0235 (4) | |
| N2 | 0.1820 (2) | 0.01726 (13) | 0.42826 (16) | 0.0220 (3) | |
| C1 | 0.2872 (3) | −0.26204 (17) | 0.51547 (19) | 0.0230 (4) | |
| H1A | 0.2243 | −0.2962 | 0.4397 | 0.028* | |
| C2 | 0.3780 (3) | −0.32397 (18) | 0.6175 (2) | 0.0265 (4) | |
| H2A | 0.3769 | −0.4006 | 0.6112 | 0.032* | |
| C3 | 0.4705 (3) | −0.27448 (19) | 0.72882 (19) | 0.0278 (4) | |
| H3A | 0.5321 | −0.3169 | 0.7985 | 0.033* | |
| C4 | 0.4715 (3) | −0.16205 (19) | 0.7370 (2) | 0.0277 (4) | |
| H4A | 0.5349 | −0.1281 | 0.8128 | 0.033* | |
| C5 | 0.3816 (3) | −0.09862 (18) | 0.63614 (19) | 0.0250 (4) | |
| H5A | 0.3831 | −0.0220 | 0.6428 | 0.030* | |
| C6 | 0.2890 (3) | −0.14930 (17) | 0.52499 (18) | 0.0216 (4) | |
| C7 | 0.0985 (3) | 0.07370 (17) | 0.33405 (18) | 0.0225 (4) | |
| C8 | 0.0876 (3) | 0.19245 (16) | 0.34351 (18) | 0.0221 (4) | |
| C9 | 0.1800 (3) | 0.24284 (17) | 0.46791 (19) | 0.0256 (4) | |
| H9A | 0.1471 | 0.3197 | 0.4678 | 0.038* | |
| H9B | 0.3164 | 0.2353 | 0.4787 | 0.038* | |
| H9C | 0.1367 | 0.2063 | 0.5382 | 0.038* | |
| H1N1 | 0.129 (4) | −0.130 (2) | 0.344 (3) | 0.032 (7)* |
| Cl1 | 0.0330 (3) | 0.0140 (2) | 0.0192 (2) | 0.00383 (16) | −0.00273 (17) | −0.00116 (15) |
| O1 | 0.0323 (8) | 0.0238 (7) | 0.0241 (7) | 0.0020 (6) | −0.0001 (6) | 0.0020 (6) |
| N1 | 0.0275 (8) | 0.0211 (8) | 0.0202 (8) | 0.0017 (6) | 0.0006 (6) | 0.0010 (6) |
| N2 | 0.0214 (7) | 0.0211 (8) | 0.0235 (8) | 0.0000 (6) | 0.0040 (6) | 0.0013 (6) |
| C1 | 0.0220 (9) | 0.0246 (10) | 0.0210 (8) | −0.0009 (7) | 0.0010 (7) | 0.0004 (7) |
| C2 | 0.0271 (9) | 0.0252 (10) | 0.0268 (10) | 0.0011 (8) | 0.0041 (8) | 0.0040 (8) |
| C3 | 0.0270 (10) | 0.0324 (11) | 0.0222 (9) | 0.0008 (8) | 0.0000 (7) | 0.0064 (8) |
| C4 | 0.0280 (10) | 0.0326 (11) | 0.0206 (9) | −0.0028 (8) | −0.0005 (7) | 0.0000 (8) |
| C5 | 0.0274 (9) | 0.0234 (10) | 0.0234 (9) | −0.0017 (7) | 0.0027 (7) | 0.0002 (7) |
| C6 | 0.0207 (8) | 0.0234 (9) | 0.0208 (9) | 0.0004 (7) | 0.0040 (7) | 0.0035 (7) |
| C7 | 0.0237 (9) | 0.0233 (10) | 0.0196 (8) | 0.0003 (7) | 0.0019 (7) | −0.0002 (7) |
| C8 | 0.0211 (8) | 0.0240 (10) | 0.0212 (9) | 0.0000 (7) | 0.0039 (7) | 0.0005 (7) |
| C9 | 0.0283 (10) | 0.0240 (10) | 0.0227 (9) | −0.0004 (7) | 0.0002 (7) | −0.0018 (7) |
| Cl1—C7 | 1.798 (2) | C3—C4 | 1.392 (3) |
| O1—C8 | 1.223 (2) | C3—H3A | 0.9500 |
| N1—N2 | 1.327 (2) | C4—C5 | 1.391 (3) |
| N1—C6 | 1.409 (2) | C4—H4A | 0.9500 |
| N1—H1N1 | 1.00 (3) | C5—C6 | 1.397 (3) |
| N2—C7 | 1.279 (3) | C5—H5A | 0.9500 |
| C1—C2 | 1.392 (3) | C7—C8 | 1.475 (3) |
| C1—C6 | 1.397 (3) | C8—C9 | 1.505 (3) |
| C1—H1A | 0.9500 | C9—H9A | 0.9800 |
| C2—C3 | 1.391 (3) | C9—H9B | 0.9800 |
| C2—H2A | 0.9500 | C9—H9C | 0.9800 |
| N2—N1—C6 | 119.79 (17) | C4—C5—H5A | 120.5 |
| N2—N1—H1N1 | 121.9 (15) | C6—C5—H5A | 120.5 |
| C6—N1—H1N1 | 118.0 (15) | C5—C6—C1 | 120.37 (18) |
| C7—N2—N1 | 121.15 (18) | C5—C6—N1 | 121.67 (18) |
| C2—C1—C6 | 119.68 (19) | C1—C6—N1 | 117.96 (18) |
| C2—C1—H1A | 120.2 | N2—C7—C8 | 120.84 (18) |
| C6—C1—H1A | 120.2 | N2—C7—Cl1 | 122.96 (16) |
| C3—C2—C1 | 120.5 (2) | C8—C7—Cl1 | 116.16 (14) |
| C3—C2—H2A | 119.8 | O1—C8—C7 | 120.24 (18) |
| C1—C2—H2A | 119.8 | O1—C8—C9 | 122.88 (19) |
| C2—C3—C4 | 119.25 (19) | C7—C8—C9 | 116.87 (17) |
| C2—C3—H3A | 120.4 | C8—C9—H9A | 109.5 |
| C4—C3—H3A | 120.4 | C8—C9—H9B | 109.5 |
| C5—C4—C3 | 121.2 (2) | H9A—C9—H9B | 109.5 |
| C5—C4—H4A | 119.4 | C8—C9—H9C | 109.5 |
| C3—C4—H4A | 119.4 | H9A—C9—H9C | 109.5 |
| C4—C5—C6 | 119.0 (2) | H9B—C9—H9C | 109.5 |
| C6—N1—N2—C7 | 179.46 (17) | N2—N1—C6—C5 | −4.6 (3) |
| C6—C1—C2—C3 | 0.0 (3) | N2—N1—C6—C1 | 175.28 (17) |
| C1—C2—C3—C4 | −0.1 (3) | N1—N2—C7—C8 | −178.98 (17) |
| C2—C3—C4—C5 | 0.2 (3) | N1—N2—C7—Cl1 | −1.3 (3) |
| C3—C4—C5—C6 | −0.1 (3) | N2—C7—C8—O1 | 179.02 (17) |
| C4—C5—C6—C1 | −0.1 (3) | Cl1—C7—C8—O1 | 1.2 (2) |
| C4—C5—C6—N1 | 179.75 (18) | N2—C7—C8—C9 | 0.5 (3) |
| C2—C1—C6—C5 | 0.1 (3) | Cl1—C7—C8—C9 | −177.33 (13) |
| C2—C1—C6—N1 | −179.73 (17) |
| H··· | ||||
| N1—H1 | 0.99 (3) | 2.01 (3) | 2.948 (2) | 157 (2) |
| C1—H1 | 0.95 | 2.45 | 3.237 (3) | 140 |
| C9—H9 | 0.98 | 2.68 | 3.560 (2) | 149 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.99 (3) | 2.01 (3) | 2.948 (2) | 157 (2) |
| C1—H1 | 0.95 | 2.45 | 3.237 (3) | 140 |
| C9—H9 | 0.98 | 2.68 | 3.560 (2) | 149 |
Symmetry codes: (i) ; (ii) .