Literature DB >> 22798909

2-{2-[(E)-(2-Benzoyl-hydrazin-1-yl-idene)meth-yl]phen-oxy}acetic acid.

Hoong-Kun Fun, Tze Shyang Chia, Ahmed M Alafeefy, Hatem A Abdel-Aziz.   

Abstract

In the title compound, C(16)H(14)N(2)O(4), the dihedral angle between the aromatic rings is 12.45 (6)°. The central C(=O)-N-N=C bridge is roughly planar (r.m.s. deviation = 0.0346 Å) and makes dihedral angles of 13.01 (7) and 0.56 (7)° with the attached phenyl and benzene rings, respectively. The acetic acid unit (r.m.s. deviation = 0.0066 Å) is twisted from its attached benzene ring [dihedral angle = 19.48 (6)°]. In the crystal, mol-ecules are linked by O-H⋯(O,N), N-H⋯O and C-H⋯O hydrogen bonds into sheets lying parallel to the bc plane. A weak aromatic π-π stacking inter-action is also observed [centroid-centroid distance = 3.7330 (7) Å].

Entities:  

Year:  2012        PMID: 22798909      PMCID: PMC3394044          DOI: 10.1107/S1600536812028735

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of hydrazones, see: Abdel-Aziz & Mekawey (2009 ▶). For a related structure, see: Rassem et al. (2012 ▶). For further synthetic details, see: Desai et al. (2000 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H14N2O4 M = 298.29 Monoclinic, a = 12.2173 (7) Å b = 7.8523 (5) Å c = 15.6025 (9) Å β = 108.577 (1)° V = 1418.82 (15) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.32 × 0.21 × 0.14 mm

Data collection

Bruker APEX DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.969, T max = 0.986 14301 measured reflections 4122 independent reflections 3463 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.124 S = 1.07 4122 reflections 203 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028735/hb6868sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028735/hb6868Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028735/hb6868Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N2O4F(000) = 624
Mr = 298.29Dx = 1.396 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5671 reflections
a = 12.2173 (7) Åθ = 2.8–30.1°
b = 7.8523 (5) ŵ = 0.10 mm1
c = 15.6025 (9) ÅT = 100 K
β = 108.577 (1)°Block, colourless
V = 1418.82 (15) Å30.32 × 0.21 × 0.14 mm
Z = 4
Bruker APEX DUO CCD diffractometer4122 independent reflections
Radiation source: fine-focus sealed tube3463 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 30.1°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→16
Tmin = 0.969, Tmax = 0.986k = −11→10
14301 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0673P)2 + 0.394P] where P = (Fo2 + 2Fc2)/3
4122 reflections(Δ/σ)max < 0.001
203 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.70132 (7)0.06520 (12)0.21655 (5)0.0260 (2)
O20.35596 (7)0.38508 (10)−0.16701 (5)0.01834 (17)
O30.48909 (8)0.40025 (12)−0.26386 (6)0.0273 (2)
H1O30.53410.4088−0.29820.033*
O40.35806 (9)0.53387 (12)−0.37939 (6)0.0305 (2)
N10.64695 (7)0.09189 (11)0.06501 (6)0.01427 (18)
N20.55352 (7)0.18816 (11)0.06821 (6)0.01471 (18)
C10.88465 (10)−0.14596 (14)0.22331 (7)0.0202 (2)
H1A0.8587−0.14040.27320.024*
C20.98417 (10)−0.23668 (15)0.22871 (9)0.0262 (2)
H2A1.0239−0.29350.28180.031*
C31.02450 (10)−0.24288 (17)0.15531 (10)0.0304 (3)
H3A1.0920−0.30180.15940.036*
C40.96375 (11)−0.16065 (17)0.07552 (10)0.0299 (3)
H4A0.9907−0.16540.02610.036*
C50.86271 (10)−0.07092 (15)0.06869 (8)0.0221 (2)
H5A0.8220−0.01700.01490.027*
C60.82339 (9)−0.06286 (13)0.14308 (7)0.0162 (2)
C70.71940 (9)0.03547 (13)0.14467 (7)0.01526 (19)
C80.49302 (8)0.25514 (13)−0.00687 (6)0.01392 (19)
H8A0.51280.2371−0.05900.017*
C90.39275 (8)0.36004 (13)−0.01025 (6)0.01350 (19)
C100.36525 (9)0.40247 (14)0.06745 (7)0.0177 (2)
H10A0.41140.36190.12330.021*
C110.27065 (10)0.50378 (15)0.06311 (7)0.0220 (2)
H11A0.25420.53220.11560.026*
C120.20069 (10)0.56235 (15)−0.02047 (7)0.0206 (2)
H12A0.13600.6278−0.02390.025*
C130.22630 (9)0.52432 (14)−0.09895 (7)0.0169 (2)
H13A0.17930.5643−0.15460.020*
C140.32297 (8)0.42582 (13)−0.09354 (6)0.01383 (19)
C150.31286 (9)0.48856 (14)−0.24511 (7)0.0180 (2)
H15A0.30960.6062−0.22720.022*
H15B0.23520.4528−0.27920.022*
C160.38970 (10)0.47431 (14)−0.30367 (7)0.0196 (2)
H1N10.6582 (14)0.066 (2)0.0106 (11)0.030 (4)*
U11U22U33U12U13U23
O10.0283 (4)0.0379 (5)0.0125 (3)0.0126 (4)0.0072 (3)0.0028 (3)
O20.0218 (4)0.0241 (4)0.0112 (3)0.0062 (3)0.0082 (3)0.0036 (3)
O30.0275 (4)0.0309 (5)0.0311 (4)0.0042 (4)0.0200 (4)0.0053 (4)
O40.0533 (6)0.0261 (4)0.0172 (4)0.0037 (4)0.0184 (4)0.0046 (3)
N10.0150 (4)0.0165 (4)0.0117 (4)0.0012 (3)0.0048 (3)−0.0007 (3)
N20.0143 (4)0.0158 (4)0.0141 (4)0.0005 (3)0.0046 (3)−0.0013 (3)
C10.0198 (5)0.0167 (5)0.0203 (5)0.0007 (4)0.0010 (4)−0.0014 (4)
C20.0198 (5)0.0185 (5)0.0328 (6)0.0023 (4)−0.0023 (4)−0.0009 (4)
C30.0182 (5)0.0232 (6)0.0491 (8)0.0042 (4)0.0097 (5)−0.0008 (5)
C40.0269 (6)0.0282 (6)0.0414 (7)0.0040 (5)0.0202 (5)−0.0003 (5)
C50.0216 (5)0.0227 (5)0.0247 (5)0.0018 (4)0.0111 (4)0.0008 (4)
C60.0143 (4)0.0145 (4)0.0187 (5)−0.0008 (4)0.0037 (4)−0.0016 (4)
C70.0160 (4)0.0160 (4)0.0138 (4)−0.0006 (4)0.0047 (3)−0.0003 (3)
C80.0153 (4)0.0142 (4)0.0128 (4)−0.0021 (3)0.0051 (3)−0.0007 (3)
C90.0147 (4)0.0133 (4)0.0127 (4)−0.0022 (3)0.0047 (3)−0.0007 (3)
C100.0218 (5)0.0194 (5)0.0122 (4)0.0003 (4)0.0055 (4)0.0000 (4)
C110.0273 (5)0.0247 (5)0.0170 (5)0.0037 (4)0.0114 (4)−0.0021 (4)
C120.0206 (5)0.0225 (5)0.0214 (5)0.0044 (4)0.0103 (4)−0.0003 (4)
C130.0164 (4)0.0188 (5)0.0157 (4)0.0015 (4)0.0051 (4)0.0018 (4)
C140.0159 (4)0.0152 (4)0.0115 (4)−0.0017 (3)0.0059 (3)−0.0007 (3)
C150.0187 (5)0.0234 (5)0.0120 (4)0.0017 (4)0.0050 (4)0.0040 (4)
C160.0289 (6)0.0170 (5)0.0160 (4)−0.0020 (4)0.0117 (4)−0.0007 (4)
O1—C71.2325 (12)C5—C61.3918 (15)
O2—C141.3686 (11)C5—H5A0.9300
O2—C151.4191 (12)C6—C71.4936 (14)
O3—C161.3107 (15)C8—C91.4631 (14)
O3—H1O30.8843C8—H8A0.9300
O4—C161.2136 (13)C9—C101.3975 (13)
N1—C71.3504 (13)C9—C141.4059 (13)
N1—N21.3831 (11)C10—C111.3869 (15)
N1—H1N10.924 (17)C10—H10A0.9300
N2—C81.2821 (13)C11—C121.3901 (16)
C1—C21.3884 (16)C11—H11A0.9300
C1—C61.3985 (15)C12—C131.3895 (14)
C1—H1A0.9300C12—H12A0.9300
C2—C31.3843 (19)C13—C141.3916 (14)
C2—H2A0.9300C13—H13A0.9300
C3—C41.389 (2)C15—C161.5084 (14)
C3—H3A0.9300C15—H15A0.9700
C4—C51.3956 (16)C15—H15B0.9700
C4—H4A0.9300
C14—O2—C15117.23 (8)C9—C8—H8A120.1
C16—O3—H1O3109.9C10—C9—C14118.14 (9)
C7—N1—N2116.90 (8)C10—C9—C8122.20 (9)
C7—N1—H1N1121.8 (10)C14—C9—C8119.62 (8)
N2—N1—H1N1121.3 (10)C11—C10—C9121.42 (9)
C8—N2—N1115.68 (8)C11—C10—H10A119.3
C2—C1—C6120.16 (11)C9—C10—H10A119.3
C2—C1—H1A119.9C10—C11—C12119.29 (9)
C6—C1—H1A119.9C10—C11—H11A120.4
C3—C2—C1120.23 (11)C12—C11—H11A120.4
C3—C2—H2A119.9C13—C12—C11120.79 (10)
C1—C2—H2A119.9C13—C12—H12A119.6
C2—C3—C4119.72 (11)C11—C12—H12A119.6
C2—C3—H3A120.1C12—C13—C14119.41 (9)
C4—C3—H3A120.1C12—C13—H13A120.3
C3—C4—C5120.67 (12)C14—C13—H13A120.3
C3—C4—H4A119.7O2—C14—C13123.35 (9)
C5—C4—H4A119.7O2—C14—C9115.76 (9)
C6—C5—C4119.43 (11)C13—C14—C9120.88 (9)
C6—C5—H5A120.3O2—C15—C16110.21 (9)
C4—C5—H5A120.3O2—C15—H15A109.6
C5—C6—C1119.78 (10)C16—C15—H15A109.6
C5—C6—C7123.97 (9)O2—C15—H15B109.6
C1—C6—C7116.22 (9)C16—C15—H15B109.6
O1—C7—N1121.36 (9)H15A—C15—H15B108.1
O1—C7—C6120.86 (9)O4—C16—O3126.30 (10)
N1—C7—C6117.77 (9)O4—C16—C15119.63 (11)
N2—C8—C9119.75 (8)O3—C16—C15114.03 (9)
N2—C8—H8A120.1
C7—N1—N2—C8172.93 (9)N2—C8—C9—C14−176.62 (9)
C6—C1—C2—C31.17 (17)C14—C9—C10—C111.25 (16)
C1—C2—C3—C4−1.25 (19)C8—C9—C10—C11179.21 (10)
C2—C3—C4—C50.4 (2)C9—C10—C11—C120.95 (17)
C3—C4—C5—C60.59 (19)C10—C11—C12—C13−1.72 (18)
C4—C5—C6—C1−0.67 (17)C11—C12—C13—C140.25 (17)
C4—C5—C6—C7177.28 (11)C15—O2—C14—C1320.08 (14)
C2—C1—C6—C5−0.20 (16)C15—O2—C14—C9−160.56 (9)
C2—C1—C6—C7−178.31 (10)C12—C13—C14—O2−178.65 (10)
N2—N1—C7—O11.68 (15)C12—C13—C14—C92.02 (16)
N2—N1—C7—C6−177.63 (8)C10—C9—C14—O2177.88 (9)
C5—C6—C7—O1−165.87 (11)C8—C9—C14—O2−0.13 (14)
C1—C6—C7—O112.14 (15)C10—C9—C14—C13−2.74 (15)
C5—C6—C7—N113.44 (16)C8—C9—C14—C13179.25 (9)
C1—C6—C7—N1−168.54 (9)C14—O2—C15—C16157.84 (9)
N1—N2—C8—C9−179.66 (8)O2—C15—C16—O4169.40 (10)
N2—C8—C9—C105.46 (15)O2—C15—C16—O3−12.74 (13)
D—H···AD—HH···AD···AD—H···A
O3—H1O3···O1i0.881.992.7194 (14)139
O3—H1O3···N2i0.882.303.0464 (12)142
N1—H1N1···O4ii0.925 (17)2.009 (16)2.9131 (13)165.4 (16)
C5—H5A···O4ii0.932.553.4058 (16)153
C11—H11A···O1iii0.932.513.3791 (13)155
C15—H15A···O1iv0.972.593.5434 (15)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H1O3⋯O1i 0.881.992.7194 (14)139
O3—H1O3⋯N2i 0.882.303.0464 (12)142
N1—H1N1⋯O4ii 0.925 (17)2.009 (16)2.9131 (13)165.4 (16)
C5—H5A⋯O4ii 0.932.553.4058 (16)153
C11—H11A⋯O1iii 0.932.513.3791 (13)155
C15—H15A⋯O1iv 0.972.593.5434 (15)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Stereoselective synthesis and antimicrobial activity of benzofuran-based (1E)-1-(piperidin-1-yl)-N2-arylamidrazones.

Authors:  Hatem A Abdel-Aziz; Amal A I Mekawey
Journal:  Eur J Med Chem       Date:  2009-09-06       Impact factor: 6.514

3.  (E)-4-Hy-droxy-N'-(2-meth-oxy-benzyl-idene)benzohydrazide.

Authors:  Hesham Hussein Rassem; Abdussalam Salhin; Baharuddin Bin Salleh; Mohd Mustaqim Rosli; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-23

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.