Literature DB >> 22798900

3-Carb-oxy-pyridinium nitrate.

Khalid Al-Farhan1, Miftahul Khair, Mohamed Ghazzali.   

Abstract

In the crystal structure of the title compound, C(6)H(6)NO(2) (+)·NO(3) (-), the protonated cations are linked by N-H⋯O hydrogen bonds into chains along the b axis. The cations and anions are also linked by N-H⋯O and O-H⋯O hydrogen bonds. C-H⋯O inter-actions also occur. In the cation, the ring makes a dihedral angle of 10.1 (3)° with the carboxylate group.

Entities:  

Year:  2012        PMID: 22798900      PMCID: PMC3394035          DOI: 10.1107/S1600536812028565

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Athimoolam & Rajaram (2005 ▶); Athimoolam & Natarajan (2007 ▶); Kutoglu & Scheringer (1983 ▶); Jebas et al. (2006 ▶); Slouf (2001 ▶); Ye et al. (2010 ▶). For graph-set descriptors, see: Etter (1990 ▶); Bernstein et al. (1995 ▶); Motherwell et al. (2000 ▶).

Experimental

Crystal data

C6H6NO2NO3 M = 186.13 Triclinic, a = 6.7530 (4) Å b = 7.5024 (4) Å c = 8.4439 (5) Å α = 81.895 (2)° β = 82.215 (1)° γ = 66.769 (2)° V = 387.69 (4) Å3 Z = 2 Mo Kα radiation μ = 0.14 mm−1 T = 293 K 0.40 × 0.20 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2007 ▶) T min = 0.946, T max = 0.986 15468 measured reflections 1760 independent reflections 1102 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.145 S = 1.13 1760 reflections 127 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2004 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812028565/lx2240sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028565/lx2240Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028565/lx2240Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6NO2+·NO3Z = 2
Mr = 186.13F(000) = 192
Triclinic, P1Dx = 1.594 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71075 Å
a = 6.7530 (4) ÅCell parameters from 963 reflections
b = 7.5024 (4) Åθ = 3.3–27.5°
c = 8.4439 (5) ŵ = 0.14 mm1
α = 81.895 (2)°T = 293 K
β = 82.215 (1)°Block, colourless
γ = 66.769 (2)°0.40 × 0.20 × 0.10 mm
V = 387.69 (4) Å3
Rigaku R-AXIS RAPID diffractometer1760 independent reflections
Radiation source: fine-focus sealed tube1102 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 3.3°
ω scansh = −8→8
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007)k = −9→9
Tmin = 0.946, Tmax = 0.986l = −10→10
15468 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: difference Fourier map
wR(F2) = 0.145H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0739P)2 + 0.025P] where P = (Fo2 + 2Fc2)/3
1760 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2671 (2)−0.1191 (2)0.48174 (17)0.0528 (4)
H1O0.277 (4)−0.232 (4)0.443 (3)0.079 (8)*
N10.2399 (3)0.3328 (2)0.7169 (2)0.0461 (5)
H1N0.245 (4)0.449 (4)0.654 (3)0.086 (9)*
C10.2321 (3)−0.1404 (3)0.6385 (2)0.0405 (5)
O20.2000 (3)−0.2778 (2)0.71433 (17)0.0570 (5)
N20.2859 (3)0.5132 (2)0.2675 (2)0.0461 (4)
C20.2350 (3)0.0215 (2)0.7207 (2)0.0366 (4)
O30.2861 (3)0.3523 (2)0.2502 (2)0.0723 (6)
C30.2385 (3)0.1913 (3)0.6360 (2)0.0416 (5)
H30.23990.20790.52470.050*
O40.2781 (3)0.5540 (2)0.40863 (18)0.0698 (5)
C40.2393 (3)0.3167 (3)0.8764 (3)0.0483 (5)
H40.24100.41820.92730.058*
C50.2361 (3)0.1507 (3)0.9645 (2)0.0497 (5)
H50.23480.13811.07580.060*
O50.2917 (3)0.6324 (3)0.1555 (2)0.0817 (6)
C60.2350 (3)0.0018 (3)0.8862 (2)0.0439 (5)
H60.2341−0.11260.94490.053*
U11U22U33U12U13U23
O10.0802 (11)0.0451 (9)0.0395 (9)−0.0309 (8)0.0008 (7)−0.0094 (6)
N10.0598 (11)0.0313 (9)0.0518 (11)−0.0232 (8)−0.0029 (8)−0.0032 (7)
C10.0501 (11)0.0346 (10)0.0389 (11)−0.0185 (9)−0.0027 (8)−0.0052 (8)
O20.0937 (12)0.0416 (8)0.0482 (9)−0.0412 (8)−0.0003 (8)−0.0045 (7)
N20.0578 (11)0.0445 (10)0.0380 (9)−0.0205 (8)−0.0065 (7)−0.0053 (7)
C20.0447 (10)0.0304 (9)0.0364 (10)−0.0171 (8)−0.0010 (8)−0.0033 (7)
O30.1120 (14)0.0623 (11)0.0602 (11)−0.0464 (10)−0.0100 (9)−0.0208 (8)
C30.0533 (12)0.0346 (10)0.0390 (10)−0.0202 (9)−0.0018 (8)−0.0025 (8)
O40.1353 (15)0.0522 (10)0.0359 (9)−0.0481 (10)−0.0118 (9)−0.0077 (7)
C40.0580 (13)0.0421 (11)0.0514 (13)−0.0237 (10)−0.0038 (9)−0.0126 (9)
C50.0660 (14)0.0477 (12)0.0408 (12)−0.0264 (11)−0.0052 (10)−0.0077 (9)
O50.1135 (15)0.0740 (12)0.0513 (10)−0.0380 (11)−0.0075 (9)0.0208 (9)
C60.0585 (12)0.0352 (10)0.0419 (11)−0.0230 (9)−0.0024 (9)−0.0031 (8)
O1—C11.311 (2)N2—O41.261 (2)
O1—H1O0.92 (3)C2—C31.377 (2)
N1—C41.335 (3)C2—C61.385 (3)
N1—C31.344 (3)C3—H30.9300
N1—H1N0.96 (3)C4—C51.364 (3)
C1—O21.213 (2)C4—H40.9300
C1—C21.489 (3)C5—C61.379 (3)
N2—O51.214 (2)C5—H50.9300
N2—O31.236 (2)C6—H60.9300
C1—O1—H1O107.7 (16)N1—C3—C2118.93 (18)
C4—N1—C3123.13 (17)N1—C3—H3120.5
C4—N1—H1N120.2 (16)C2—C3—H3120.5
C3—N1—H1N116.7 (16)N1—C4—C5119.72 (18)
O2—C1—O1124.77 (18)N1—C4—H4120.1
O2—C1—C2121.11 (18)C5—C4—H4120.1
O1—C1—C2114.11 (16)C4—C5—C6119.0 (2)
O5—N2—O3123.04 (18)C4—C5—H5120.5
O5—N2—O4119.22 (18)C6—C5—H5120.5
O3—N2—O4117.74 (17)C5—C6—C2120.39 (18)
C3—C2—C6118.80 (17)C5—C6—H6119.8
C3—C2—C1121.64 (17)C2—C6—H6119.8
C6—C2—C1119.56 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O4i0.92 (3)1.67 (3)2.5833 (19)169 (2)
N1—H1N···O2ii0.96 (3)2.08 (3)2.824 (2)133 (2)
N1—H1N···O40.96 (3)2.12 (3)2.921 (2)139 (2)
C3—H3···O30.932.453.330 (3)158
C6—H6···O5iii0.932.373.259 (2)160
C5—H5···O3iv0.932.473.142 (2)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯O4i 0.92 (3)1.67 (3)2.5833 (19)169 (2)
N1—H1N⋯O2ii 0.96 (3)2.08 (3)2.824 (2)133 (2)
N1—H1N⋯O40.96 (3)2.12 (3)2.921 (2)139 (2)
C3—H3⋯O30.932.453.330 (3)158
C6—H6⋯O5iii 0.932.373.259 (2)160
C5—H5⋯O3iv 0.932.473.142 (2)129

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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2.  A short history of SHELX.

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