Literature DB >> 22798899

4,6-Dichloro-2-((E)-{4-[(E)-3,5-dichloro-2-hy-droxy-benzyl-idene-amino]-butyl-imino}-meth-yl)phenol.

Hadi Kargar, Reza Kia, Amir Adabi Ardakani, Muhammad Nawaz Tahir.   

Abstract

The asymmetric unit of the title compound, C(18)H(16)Cl(4)N(2)O(2), comprises half of a potentially tetra-dentate Schiff base ligand. It is located about a twofold rotation axis that bis-ects the central C-C bond of the butane-1,4-diamine group. There are two intra-molecular O-H⋯N hydrogen bonds making S(6) ring motifs. In the crystal, mol-ecules are linked by pairs of weak C-H⋯Cl inter-actions, forming inversion dimers, which are further connected by C-H⋯O hydrogen bonds into two-dimensional frameworks that lie parallel to (001).

Entities:  

Year:  2012        PMID: 22798899      PMCID: PMC3394034          DOI: 10.1107/S1600536812028693

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For standard bond lengths, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related Schiff base ligands, see: Kargar et al. (2011 ▶); Kia et al. (2010 ▶).

Experimental

Crystal data

C18H16Cl4N2O2 M = 434.13 Orthorhombic, a = 15.871 (3) Å b = 12.505 (3) Å c = 9.4133 (18) Å V = 1868.3 (6) Å3 Z = 4 Mo Kα radiation μ = 0.65 mm−1 T = 291 K 0.35 × 0.16 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.805, T max = 0.915 8772 measured reflections 2057 independent reflections 1264 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.095 S = 1.02 2057 reflections 118 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶)’; data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028693/su2460sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028693/su2460Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028693/su2460Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H16Cl4N2O2F(000) = 888
Mr = 434.13Dx = 1.543 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 851 reflections
a = 15.871 (3) Åθ = 2.8–27.5°
b = 12.505 (3) ŵ = 0.65 mm1
c = 9.4133 (18) ÅT = 291 K
V = 1868.3 (6) Å3Needle, yellow
Z = 40.35 × 0.16 × 0.14 mm
Bruker SMART APEXII CCD area-detector diffractometer2057 independent reflections
Radiation source: fine-focus sealed tube1264 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.058
φ and ω scansθmax = 27.1°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −20→12
Tmin = 0.805, Tmax = 0.915k = −16→15
8772 measured reflectionsl = −10→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0259P)2 + 0.896P] where P = (Fo2 + 2Fc2)/3
2057 reflections(Δ/σ)max < 0.001
118 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.37204 (6)0.74164 (6)0.18745 (9)0.0673 (3)
Cl20.44335 (5)0.32968 (6)0.08251 (9)0.0613 (3)
O10.24660 (12)0.65449 (13)0.3845 (2)0.0492 (5)
H10.20620.61890.44130.074*
N10.16734 (13)0.50222 (17)0.5089 (2)0.0383 (5)
C10.29214 (16)0.57913 (19)0.3202 (3)0.0356 (6)
C20.35462 (17)0.60699 (19)0.2224 (3)0.0404 (7)
C30.40082 (17)0.5318 (2)0.1515 (3)0.0428 (7)
H30.44180.55260.08660.051*
C40.38606 (17)0.4244 (2)0.1772 (3)0.0413 (7)
C50.32680 (17)0.3932 (2)0.2738 (3)0.0402 (7)
H50.31810.32090.29100.048*
C60.27940 (16)0.46897 (19)0.3465 (3)0.0344 (6)
C70.21558 (16)0.4352 (2)0.4470 (3)0.0379 (6)
H70.20960.36280.46700.046*
C80.10183 (16)0.4624 (2)0.6055 (3)0.0435 (7)
H8A0.09460.51250.68330.052*
H8B0.11940.39440.64520.052*
C90.01787 (17)0.4483 (2)0.5280 (3)0.0481 (8)
H9A0.02580.39930.44920.058*
H9B−0.02250.41630.59260.058*
U11U22U33U12U13U23
Cl10.0782 (6)0.0361 (4)0.0874 (6)−0.0057 (4)0.0253 (5)0.0114 (4)
Cl20.0628 (5)0.0484 (4)0.0727 (6)0.0047 (4)0.0223 (4)−0.0103 (4)
O10.0497 (12)0.0349 (10)0.0630 (12)0.0051 (9)0.0161 (11)0.0044 (9)
N10.0308 (12)0.0419 (12)0.0421 (13)−0.0032 (11)0.0016 (11)0.0050 (11)
C10.0305 (15)0.0343 (13)0.0420 (15)0.0009 (12)−0.0014 (13)0.0019 (12)
C20.0410 (17)0.0321 (13)0.0481 (17)−0.0052 (13)0.0009 (14)0.0058 (12)
C30.0362 (16)0.0458 (16)0.0465 (17)−0.0041 (13)0.0077 (14)0.0027 (13)
C40.0394 (17)0.0371 (14)0.0475 (16)−0.0003 (13)0.0042 (14)−0.0056 (13)
C50.0408 (16)0.0324 (13)0.0473 (17)−0.0022 (12)0.0036 (14)0.0013 (12)
C60.0309 (15)0.0353 (13)0.0371 (15)−0.0014 (12)−0.0007 (12)0.0026 (11)
C70.0354 (16)0.0330 (13)0.0453 (16)−0.0042 (13)−0.0035 (13)0.0041 (12)
C80.0383 (16)0.0475 (16)0.0446 (16)−0.0011 (14)0.0032 (15)0.0056 (13)
C90.0408 (18)0.0456 (16)0.0578 (19)−0.0038 (14)0.0128 (16)0.0048 (14)
Cl1—C21.738 (2)C4—C51.365 (3)
Cl2—C41.739 (3)C5—C61.390 (3)
O1—C11.333 (3)C5—H50.9300
O1—H10.9457C6—C71.449 (3)
N1—C71.276 (3)C7—H70.9300
N1—C81.468 (3)C8—C91.530 (4)
C1—C21.397 (4)C8—H8A0.9700
C1—C61.414 (3)C8—H8B0.9700
C2—C31.366 (4)C9—C9i1.506 (5)
C3—C41.385 (3)C9—H9A0.9700
C3—H30.9300C9—H9B0.9700
C1—O1—H1106.9C5—C6—C7120.1 (2)
C7—N1—C8119.0 (2)C1—C6—C7119.9 (2)
O1—C1—C2120.5 (2)N1—C7—C6121.8 (2)
O1—C1—C6122.1 (2)N1—C7—H7119.1
C2—C1—C6117.4 (2)C6—C7—H7119.1
C3—C2—C1122.1 (2)N1—C8—C9111.1 (2)
C3—C2—Cl1119.3 (2)N1—C8—H8A109.4
C1—C2—Cl1118.6 (2)C9—C8—H8A109.4
C2—C3—C4119.4 (3)N1—C8—H8B109.4
C2—C3—H3120.3C9—C8—H8B109.4
C4—C3—H3120.3H8A—C8—H8B108.0
C5—C4—C3120.7 (2)C9i—C9—C8113.3 (3)
C5—C4—Cl2120.5 (2)C9i—C9—H9A108.9
C3—C4—Cl2118.9 (2)C8—C9—H9A108.9
C4—C5—C6120.4 (2)C9i—C9—H9B108.9
C4—C5—H5119.8C8—C9—H9B108.9
C6—C5—H5119.8H9A—C9—H9B107.7
C5—C6—C1120.0 (2)
O1—C1—C2—C3−178.1 (2)C4—C5—C6—C7178.9 (2)
C6—C1—C2—C31.5 (4)O1—C1—C6—C5178.1 (2)
O1—C1—C2—Cl10.4 (4)C2—C1—C6—C5−1.5 (4)
C6—C1—C2—Cl1−180.0 (2)O1—C1—C6—C7−0.5 (4)
C1—C2—C3—C4−0.4 (4)C2—C1—C6—C7179.9 (2)
Cl1—C2—C3—C4−178.8 (2)C8—N1—C7—C6177.7 (2)
C2—C3—C4—C5−0.9 (4)C5—C6—C7—N1−175.5 (2)
C2—C3—C4—Cl2178.2 (2)C1—C6—C7—N13.1 (4)
C3—C4—C5—C61.0 (4)C7—N1—C8—C9−93.8 (3)
Cl2—C4—C5—C6−178.2 (2)N1—C8—C9—C9i−63.4 (4)
C4—C5—C6—C10.3 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.951.712.565 (3)149
C5—H5···O1ii0.932.483.370 (3)160
C3—H3···Cl2iii0.932.833.738 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.951.712.565 (3)149
C5—H5⋯O1i 0.932.483.370 (3)160
C3—H3⋯Cl2ii 0.932.833.738 (3)165

Symmetry codes: (i) ; (ii) .

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