Literature DB >> 22798877

4-(3-Fluoro-anilino)thieno[2,3-b]pyridine-6-carb-oxy-lic acid.

Luiz C S Pinheiro, Alice M R Bernardino, Solange M S V Wardell, James L Wardell, Edward R T Tiekink.   

Abstract

In the title compound, C(14)H(9)FN(2)O(2)S, the thieno[2,3-b]pyridine residue is almost planar (r.m.s. deviation = 0.0194 Å), with the carb-oxy-lic acid group [dihedral angle = 11.9 (3)°] and the benzene ring [71.1 (4)°] being twisted out of this plane to different extents. An intra-molecular N-H⋯O(carbon-yl) hydrogen bond closes an S(6) ring. Supra-molecular chains along [01-1] mediated by O-H⋯N(pyridine) hydrogen bonds feature in the crystal. A three-dimensional architecture is completed by π-π inter-actions occurring between the benzene ring and the two rings of the thieno[2,3-b]pyridine residue [centroid-centroid distances = 3.6963 (13) and 3.3812 (13) Å]. The F atom is disordered over the two meta sites in a near statistical ratio [0.545 (5):0.455 (5)].

Entities:  

Year:  2012        PMID: 22798877      PMCID: PMC3394012          DOI: 10.1107/S1600536812027195

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4-(aryl­amino)­thieno[2,3-b]pyridine-5-carb­oxy­lic acids, see: Bernardino et al. (2007 ▶); Pinheiro et al. (2008 ▶). For the synthesis, see: Leal et al. (2008 ▶).

Experimental

Crystal data

C14H9FN2O2S M = 288.29 Orthorhombic, a = 17.0666 (6) Å b = 8.7147 (3) Å c = 7.9931 (2) Å V = 1188.82 (7) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 120 K 0.66 × 0.24 × 0.17 mm

Data collection

Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.788, T max = 1.000 10259 measured reflections 2643 independent reflections 2376 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.087 S = 1.06 2643 reflections 197 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.42 e Å−3 Absolute structure: Flack (1983 ▶), 1181 Friedel pairs Flack parameter: 0.15 (9) Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812027195/hb6844sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812027195/hb6844Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812027195/hb6844Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H9FN2O2SF(000) = 592
Mr = 288.29Dx = 1.611 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 1601 reflections
a = 17.0666 (6) Åθ = 1.0–27.5°
b = 8.7147 (3) ŵ = 0.29 mm1
c = 7.9931 (2) ÅT = 120 K
V = 1188.82 (7) Å3Blade, dark-orange
Z = 40.66 × 0.24 × 0.17 mm
Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer2643 independent reflections
Radiation source: Bruker-Nonius FR591 rotating anode2376 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.058
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.5°
φ & ω scansh = −22→22
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −11→11
Tmin = 0.788, Tmax = 1.000l = −10→9
10259 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.087w = 1/[σ2(Fo2) + (0.0375P)2 + 0.2847P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2643 reflectionsΔρmax = 0.20 e Å3
197 parametersΔρmin = −0.42 e Å3
3 restraintsAbsolute structure: Flack (1983), 1181 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.15 (9)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.02466 (3)0.49277 (6)0.56709 (9)0.02149 (14)
O10.26956 (9)0.89190 (18)1.0209 (2)0.0246 (4)
H1O0.2865 (16)0.959 (2)1.090 (3)0.037*
O20.17443 (8)1.06688 (18)1.0208 (2)0.0254 (4)
N10.15569 (10)0.5951 (2)0.7157 (2)0.0185 (4)
N20.03616 (11)0.9821 (2)0.9068 (3)0.0214 (4)
H2N0.0711 (11)1.041 (3)0.956 (3)0.026*
C10.18990 (13)0.7023 (2)0.8094 (3)0.0184 (5)
H10.24450.69180.82980.022*
C20.15232 (12)0.8288 (2)0.8800 (2)0.0161 (4)
C30.07089 (13)0.8526 (2)0.8490 (3)0.0167 (4)
C40.03239 (12)0.7380 (2)0.7525 (3)0.0154 (4)
C5−0.04725 (13)0.7259 (2)0.6927 (3)0.0190 (5)
H5−0.08720.79770.71950.023*
C6−0.05889 (12)0.6029 (2)0.5952 (3)0.0214 (5)
H6−0.10810.57840.54640.026*
C70.07779 (12)0.6170 (2)0.6923 (3)0.0172 (4)
C80.19891 (12)0.9401 (3)0.9793 (3)0.0198 (5)
C9−0.04436 (13)1.0256 (3)0.9067 (3)0.0197 (5)
C10−0.06524 (14)1.1599 (3)0.8256 (3)0.0222 (5)
H10−0.02791.21530.76130.027*
C12−0.19667 (14)1.1360 (3)0.9319 (4)0.0341 (6)
H12−0.24871.17410.94060.041*
C14−0.09947 (13)0.9457 (3)1.0002 (3)0.0245 (5)
H14−0.08570.85311.05540.029*
C11−0.14136 (15)1.2115 (3)0.8400 (3)0.0315 (6)0.545 (5)
C13−0.17454 (14)1.0032 (3)1.0113 (3)0.0310 (6)0.545 (5)
H13−0.21220.94911.07610.037*0.545 (5)
F1−0.16627 (15)1.3395 (3)0.7761 (3)0.0330 (9)0.545 (5)
C11'−0.14136 (15)1.2115 (3)0.8400 (3)0.0315 (6)0.455 (5)
H11−0.15591.30320.78380.038*0.455 (5)
C13'−0.17454 (14)1.0032 (3)1.0113 (3)0.0310 (6)0.455 (5)
F1'−0.23113 (18)0.9534 (4)1.1023 (4)0.0392 (12)0.455 (5)
U11U22U33U12U13U23
S10.0221 (2)0.0178 (2)0.0245 (3)−0.0018 (2)−0.0014 (3)−0.0059 (2)
O10.0187 (7)0.0219 (8)0.0332 (9)0.0019 (6)−0.0077 (6)−0.0077 (7)
O20.0198 (8)0.0194 (8)0.0370 (10)−0.0001 (6)−0.0014 (7)−0.0092 (7)
N10.0181 (9)0.0169 (9)0.0205 (9)0.0010 (7)0.0011 (7)−0.0018 (8)
N20.0165 (9)0.0178 (9)0.0300 (11)0.0007 (7)−0.0026 (8)−0.0070 (8)
C10.0175 (10)0.0170 (10)0.0208 (12)0.0006 (8)−0.0013 (8)0.0037 (9)
C20.0162 (10)0.0149 (9)0.0171 (11)−0.0008 (8)−0.0004 (8)−0.0001 (8)
C30.0198 (11)0.0139 (10)0.0163 (10)−0.0010 (8)0.0016 (8)0.0019 (9)
C40.0194 (10)0.0147 (10)0.0123 (10)0.0002 (8)0.0006 (8)0.0015 (8)
C50.0172 (10)0.0201 (11)0.0197 (11)0.0003 (8)−0.0007 (8)0.0030 (9)
C60.0203 (10)0.0213 (10)0.0226 (12)−0.0011 (8)−0.0030 (9)−0.0002 (9)
C70.0204 (10)0.0145 (10)0.0165 (10)−0.0013 (8)0.0003 (8)0.0006 (8)
C80.0184 (11)0.0211 (11)0.0199 (12)−0.0006 (9)−0.0015 (9)−0.0005 (9)
C90.0178 (10)0.0219 (11)0.0194 (11)0.0016 (9)−0.0033 (8)−0.0071 (9)
C100.0214 (12)0.0197 (11)0.0256 (12)−0.0001 (10)−0.0029 (9)−0.0040 (10)
C120.0170 (11)0.0419 (15)0.0434 (15)0.0045 (11)−0.0050 (11)−0.0252 (13)
C140.0249 (12)0.0257 (11)0.0230 (12)−0.0059 (10)0.0003 (10)−0.0021 (10)
C110.0325 (14)0.0242 (12)0.0379 (15)0.0084 (11)−0.0111 (12)−0.0113 (11)
C130.0208 (12)0.0425 (16)0.0296 (14)−0.0062 (10)0.0022 (10)−0.0162 (12)
F10.0327 (16)0.0212 (14)0.0452 (18)0.0071 (12)−0.0064 (12)0.0067 (12)
C11'0.0325 (14)0.0242 (12)0.0379 (15)0.0084 (11)−0.0111 (12)−0.0113 (11)
C13'0.0208 (12)0.0425 (16)0.0296 (14)−0.0062 (10)0.0022 (10)−0.0162 (12)
F1'0.0281 (18)0.046 (2)0.044 (2)−0.0163 (14)0.0099 (15)−0.0147 (18)
S1—C71.731 (2)C6—H60.9500
S1—C61.733 (2)C9—C141.388 (3)
O1—C81.319 (3)C9—C101.384 (3)
O1—H1O0.852 (10)C10—C11'1.380 (3)
O2—C81.227 (3)C10—C111.380 (3)
N1—C11.332 (3)C10—H100.9500
N1—C71.356 (3)C12—C11'1.365 (4)
N2—C31.356 (3)C12—C111.365 (4)
N2—C91.426 (3)C12—C13'1.373 (4)
N2—H2N0.881 (10)C12—C131.373 (4)
C1—C21.394 (3)C12—H120.9500
C1—H10.9500C14—C13'1.378 (3)
C2—C31.427 (3)C14—C131.378 (3)
C2—C81.484 (3)C14—H140.9500
C3—C41.422 (3)C11—F11.298 (4)
C4—C71.394 (3)C13—H130.9500
C4—C51.445 (3)C11'—H110.9500
C5—C61.340 (3)C13'—F1'1.284 (4)
C5—H50.9500
C7—S1—C690.55 (10)C11'—C10—C9118.6 (2)
C8—O1—H1O104.9 (19)C11—C10—C9118.6 (2)
C1—N1—C7114.12 (18)C11'—C10—H10120.7
C3—N2—C9129.99 (18)C11—C10—H10120.7
C3—N2—H2N110.0 (17)C9—C10—H10120.7
C9—N2—H2N119.9 (17)C11'—C12—C110.0 (3)
N1—C1—C2125.5 (2)C11'—C12—C13'117.7 (2)
N1—C1—H1117.3C11—C12—C13'117.7 (2)
C2—C1—H1117.3C11'—C12—C13117.7 (2)
C1—C2—C3119.5 (2)C11—C12—C13117.7 (2)
C1—C2—C8119.12 (19)C13'—C12—C130.0 (2)
C3—C2—C8121.30 (19)C11'—C12—H12121.1
N2—C3—C4124.5 (2)C11—C12—H12121.1
N2—C3—C2119.2 (2)C13'—C12—H12121.1
C4—C3—C2116.25 (18)C13—C12—H12121.1
C7—C4—C3117.46 (18)C9—C14—C13'118.9 (2)
C7—C4—C5110.70 (19)C9—C14—C13118.9 (2)
C3—C4—C5131.71 (19)C13'—C14—C130.00 (7)
C6—C5—C4113.0 (2)C9—C14—H14120.6
C6—C5—H5123.5C13'—C14—H14120.6
C4—C5—H5123.5C13—C14—H14120.6
C5—C6—S1113.36 (17)F1—C11—C12113.5 (3)
C5—C6—H6123.3F1—C11—C10123.8 (3)
S1—C6—H6123.3C12—C11—C10122.6 (2)
N1—C7—C4127.12 (19)C12—C13—C14122.1 (2)
N1—C7—S1120.36 (16)C12—C13—H13118.9
C4—C7—S1112.43 (15)C14—C13—H13118.9
O2—C8—O1122.0 (2)C12—C11'—C10122.6 (2)
O2—C8—C2123.44 (19)C12—C11'—H11118.7
O1—C8—C2114.57 (19)C10—C11'—H11118.7
C14—C9—C10120.1 (2)F1'—C13'—C12109.9 (3)
C14—C9—N2121.3 (2)F1'—C13'—C14127.8 (3)
C10—C9—N2118.2 (2)C12—C13'—C14122.1 (2)
C11'—C10—C110.0 (2)
C7—N1—C1—C2−0.3 (3)C10—C9—C14—C13'−0.5 (3)
N1—C1—C2—C3−1.9 (3)N2—C9—C14—C13'172.4 (2)
N1—C1—C2—C8−178.91 (19)C10—C9—C14—C13−0.5 (3)
C9—N2—C3—C49.1 (4)N2—C9—C14—C13172.4 (2)
C9—N2—C3—C2−173.2 (2)C11'—C12—C11—F10 (97)
C1—C2—C3—N2−174.7 (2)C13'—C12—C11—F1−176.8 (2)
C8—C2—C3—N22.2 (3)C13—C12—C11—F1−176.8 (2)
C1—C2—C3—C43.1 (3)C11'—C12—C11—C100 (100)
C8—C2—C3—C4−179.95 (19)C13'—C12—C11—C10−0.4 (4)
N2—C3—C4—C7175.4 (2)C13—C12—C11—C10−0.4 (4)
C2—C3—C4—C7−2.3 (3)C11'—C10—C11—F10 (100)
N2—C3—C4—C50.0 (4)C9—C10—C11—F1176.5 (3)
C2—C3—C4—C5−177.7 (2)C11'—C10—C11—C120 (75)
C7—C4—C5—C60.2 (3)C9—C10—C11—C120.4 (4)
C3—C4—C5—C6175.9 (2)C11'—C12—C13—C14−0.1 (4)
C4—C5—C6—S1−0.3 (3)C11—C12—C13—C14−0.1 (4)
C7—S1—C6—C50.20 (18)C13'—C12—C13—C140 (100)
C1—N1—C7—C41.2 (3)C9—C14—C13—C120.6 (4)
C1—N1—C7—S1177.51 (16)C13'—C14—C13—C120 (100)
C3—C4—C7—N10.2 (3)C11—C12—C11'—C100 (100)
C5—C4—C7—N1176.5 (2)C13'—C12—C11'—C10−0.4 (4)
C3—C4—C7—S1−176.41 (16)C13—C12—C11'—C10−0.4 (4)
C5—C4—C7—S1−0.1 (2)C11—C10—C11'—C120 (75)
C6—S1—C7—N1−176.90 (18)C9—C10—C11'—C120.4 (4)
C6—S1—C7—C4−0.07 (17)C11'—C12—C13'—F1'174.9 (3)
C1—C2—C8—O2166.8 (2)C11—C12—C13'—F1'174.9 (3)
C3—C2—C8—O2−10.2 (3)C13—C12—C13'—F1'0 (59)
C1—C2—C8—O1−13.5 (3)C11'—C12—C13'—C14−0.1 (4)
C3—C2—C8—O1169.52 (19)C11—C12—C13'—C14−0.1 (4)
C3—N2—C9—C1465.4 (4)C13—C12—C13'—C140 (100)
C3—N2—C9—C10−121.5 (3)C9—C14—C13'—F1'−173.6 (3)
C14—C9—C10—C11'0.0 (3)C13—C14—C13'—F1'0 (79)
N2—C9—C10—C11'−173.1 (2)C9—C14—C13'—C120.6 (4)
C14—C9—C10—C110.0 (3)C13—C14—C13'—C120 (100)
N2—C9—C10—C11−173.1 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N1i0.86 (2)1.84 (2)2.681 (2)167 (3)
N2—H2n···O20.88 (2)1.85 (2)2.635 (2)147 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1o⋯N1i 0.86 (2)1.84 (2)2.681 (2)167 (3)
N2—H2n⋯O20.88 (2)1.85 (2)2.635 (2)147 (2)

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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