Literature DB >> 22798859

N,N-Bis(pyridin-2-ylmeth-yl)cyclo-hexa-namine.

Matthew P Akerman1, Mathias Chipangura, Allen Mambanda, Deogratius Jaganyi.   

Abstract

The pyridine rings of the title compound, C(18)H(23)N(3), are in a nearly perpendicular orientation relative to the plane defined by the three amino-bonded C atoms, making dihedral angles of 87.4 (1) ° and 84.2 (1) °. One of the pyridine N atoms acts as an hydrogen-bond acceptor for two pyridine C-H groups. By means of these intermolecular hydrogen bonds, the mol-ecules form a two-dimensional network parallel to the ab plane.

Entities:  

Year:  2012        PMID: 22798859      PMCID: PMC3393994          DOI: 10.1107/S1600536812027572

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a kinetic and mechanistic study of the platinum(II) chelate of the title compound, see: Mambanda & Jaganyi (2012 ▶). For the synthesis of the title compound, see: Sato et al. (1992 ▶); Toftlund & Yde-Andersen (1981 ▶); Anderegg & Wenk (1967 ▶). For the crystal structure of the related compound N,N-bis­(2-pyridyl­meth­yl)-tert-butyl­amine, see: Mambanda et al. (2009 ▶). For the crystal structures of the hexa­dentate analogues, see: Mambanda et al. (2007 ▶). For dinuclear platinum(II) complexes structurally related to the complex of the title compound, see: Hofmann & van Eldik (2003 ▶); Erteurk et al. (2007 ▶, 2008 ▶). For dinuclear metal complexes containing bis­(tridentate) chelates structurally related to the title compound, see: Fujihara et al. (2004 ▶); Gunatilleke & Norman (2003 ▶); Fujii et al. (2003 ▶). For manganese–oxo complexes of N,N-bis­(2-pyridyl­meth­yl)ethyl­amine and N,N-bis­ (2-pyridyl­meth­yl)-tert-butyl­amine, see: Pal et al. (1992 ▶) and Mok et al. (1997 ▶), respectively.

Experimental

Crystal data

C18H23N3 M = 281.39 Monoclinic, a = 6.2272 (2) Å b = 18.1729 (7) Å c = 14.3213 (5) Å β = 102.118 (4)° V = 1584.57 (10) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 120 K 0.60 × 0.50 × 0.30 mm

Data collection

Oxford Diffraction Xcalibur 2 CCD diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.959, T max = 0.979 7854 measured reflections 2521 independent reflections 2134 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.085 S = 0.98 2134 reflections 190 parameters 2 restraints H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: WinGX (Farrugia, 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812027572/ld2063sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812027572/ld2063Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812027572/ld2063Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H23N3F(000) = 608
Mr = 281.39Dx = 1.180 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 2134 reflections
a = 6.2272 (2) Åθ = 3.5–32.1°
b = 18.1729 (7) ŵ = 0.07 mm1
c = 14.3213 (5) ÅT = 120 K
β = 102.118 (4)°Planar, colourless
V = 1584.57 (10) Å30.60 × 0.50 × 0.30 mm
Z = 4
Oxford Diffraction Xcalibur 2 CCD diffractometer2521 independent reflections
Radiation source: fine-focus sealed tube2134 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω scans at fixed θ anglesθmax = 32.1°, θmin = 3.5°
Absorption correction: multi-scan (Blessing, 1995)h = −9→6
Tmin = 0.959, Tmax = 0.979k = −26→25
7854 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.053P)2] where P = (Fo2 + 2Fc2)/3
2134 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.15 e Å3
2 restraintsΔρmin = −0.25 e Å3
Experimental. Yield: 1.3432 g (40%), colourless block crystals. 1H NMR (400 MHz, CDCl3) δ (p.p.m.): 8.58 (d, 2H); 8.50–7.60 (m, 4H); 7.05 (t, 2H); 3.39 (s, 4H); 2.55 (m, 1H); 1.90 (d, 2H); 1.8 (m, 2H); 1.60 (d, 2H); 1.35 (m, 2H); 1.19 (m, 2H). 13C NMR (100 MHz, CDCl3) δ / p.p.m.: 27.0; 29; 57.0; 60.5; 122.0; 123.0; 136.0; 148.0; 161. IR (KBr, 4000–400 cm-1): 2958–2854 (alkyl C—H stretch); 1589 C=N (pyridyl). MS—ES+, m/e: 282.2069, (M +1)+. Anal. Calc. for C18H23N3: C, 76.81; H, 8.24; N, 14.93; Found: C, 76.8; H, 8.18; N, 14.89.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8715 (2)0.26180 (9)0.20552 (11)0.0220 (3)
H1A1.01030.28460.19670.026*
H1B0.90820.21350.23690.026*
C20.7709 (2)0.31007 (8)0.27025 (10)0.0186 (3)
C30.5510 (2)0.30374 (9)0.27499 (11)0.0235 (3)
H30.45700.27090.23380.028*
C40.4709 (3)0.34586 (10)0.34038 (12)0.0258 (3)
H40.32150.34200.34510.031*
C50.6111 (3)0.39369 (10)0.39884 (12)0.0265 (3)
H50.56100.42300.44490.032*
C60.8260 (3)0.39748 (9)0.38825 (12)0.0253 (3)
H60.92210.43080.42780.030*
C70.7975 (3)0.18410 (9)0.06711 (11)0.0219 (3)
H7A0.95830.18560.07190.026*
H7B0.72580.1839−0.00150.026*
C80.7384 (3)0.11434 (8)0.11310 (11)0.0215 (3)
C90.5374 (3)0.10687 (10)0.14035 (12)0.0270 (3)
H90.43480.14630.13100.032*
C100.4884 (3)0.04184 (10)0.18101 (13)0.0310 (4)
H100.35230.03580.20020.037*
C110.6412 (3)−0.01444 (10)0.19330 (13)0.0313 (4)
H110.6137−0.05980.22160.038*
C120.8340 (3)−0.00279 (10)0.16339 (14)0.0321 (4)
H120.9380−0.04170.17130.039*
C130.7079 (2)0.31684 (8)0.05181 (11)0.0196 (3)
H130.68550.35900.09360.024*
C140.9088 (3)0.33578 (9)0.01086 (12)0.0240 (3)
H14A1.03920.34060.06360.029*
H14B0.93700.2955−0.03150.029*
C150.8733 (3)0.40755 (10)−0.04551 (13)0.0304 (4)
H15A1.00340.4179−0.07300.036*
H15B0.85670.4485−0.00200.036*
C160.6690 (3)0.40310 (10)−0.12573 (12)0.0295 (4)
H16A0.64550.4510−0.15930.035*
H16B0.69100.3652−0.17250.035*
C170.4681 (3)0.38384 (10)−0.08605 (12)0.0285 (4)
H17A0.33950.3782−0.13950.034*
H17B0.43670.4245−0.04490.034*
C180.5024 (3)0.31257 (10)−0.02789 (12)0.0250 (3)
H18A0.37260.30340.00030.030*
H18B0.51650.2709−0.07070.030*
N10.7294 (2)0.24994 (7)0.11224 (9)0.0197 (3)
N20.9074 (2)0.35684 (7)0.32526 (10)0.0219 (3)
N30.8852 (2)0.05990 (8)0.12380 (11)0.0268 (3)
U11U22U33U12U13U23
C10.0195 (7)0.0269 (8)0.0196 (7)0.0041 (6)0.0039 (5)0.0007 (6)
C20.0202 (7)0.0190 (7)0.0164 (6)0.0021 (5)0.0033 (5)0.0032 (5)
C30.0205 (7)0.0296 (8)0.0199 (7)−0.0015 (6)0.0031 (6)−0.0010 (6)
C40.0231 (7)0.0326 (9)0.0235 (7)0.0012 (6)0.0089 (6)0.0022 (7)
C50.0319 (8)0.0269 (8)0.0231 (7)0.0061 (7)0.0114 (6)−0.0004 (6)
C60.0289 (8)0.0217 (8)0.0249 (7)0.0004 (6)0.0043 (6)−0.0015 (6)
C70.0248 (7)0.0214 (7)0.0212 (7)0.0019 (6)0.0090 (6)0.0002 (6)
C80.0253 (7)0.0221 (7)0.0173 (6)−0.0018 (6)0.0049 (6)−0.0011 (6)
C90.0246 (8)0.0273 (8)0.0302 (8)−0.0003 (6)0.0081 (7)−0.0021 (7)
C100.0311 (8)0.0324 (9)0.0317 (9)−0.0092 (7)0.0114 (7)−0.0034 (7)
C110.0393 (10)0.0259 (8)0.0277 (8)−0.0097 (7)0.0048 (7)0.0014 (7)
C120.0336 (9)0.0242 (9)0.0384 (10)0.0013 (7)0.0072 (8)0.0044 (8)
C130.0198 (7)0.0208 (7)0.0187 (6)0.0015 (6)0.0049 (5)−0.0010 (6)
C140.0224 (7)0.0251 (8)0.0248 (7)−0.0013 (6)0.0058 (6)0.0008 (6)
C150.0363 (9)0.0266 (9)0.0282 (8)−0.0056 (7)0.0065 (7)0.0020 (7)
C160.0395 (10)0.0269 (8)0.0211 (7)0.0012 (7)0.0041 (7)0.0029 (6)
C170.0291 (8)0.0307 (8)0.0234 (7)0.0062 (7)0.0002 (6)0.0014 (7)
C180.0205 (7)0.0295 (8)0.0238 (7)0.0003 (6)0.0016 (6)0.0027 (6)
N10.0226 (6)0.0211 (6)0.0157 (6)0.0025 (5)0.0048 (5)−0.0003 (5)
N20.0215 (6)0.0202 (6)0.0238 (6)0.0006 (5)0.0040 (5)0.0008 (5)
N30.0282 (7)0.0224 (7)0.0308 (7)0.0022 (6)0.0080 (6)0.0018 (6)
C1—N11.4554 (19)C10—H100.9500
C1—C21.505 (2)C11—C121.373 (3)
C1—H1A0.9900C11—H110.9500
C1—H1B0.9900C12—N31.341 (2)
C2—N21.3359 (19)C12—H120.9500
C2—C31.390 (2)C13—N11.4821 (19)
C3—C41.381 (2)C13—C181.528 (2)
C3—H30.9500C13—C141.528 (2)
C4—C51.383 (2)C13—H131.0000
C4—H40.9500C14—C151.526 (2)
C5—C61.380 (2)C14—H14A0.9900
C5—H50.9500C14—H14B0.9900
C6—N21.345 (2)C15—C161.527 (2)
C6—H60.9500C15—H15A0.9900
C7—N11.4642 (19)C15—H15B0.9900
C7—C81.509 (2)C16—C171.520 (3)
C7—H7A0.9900C16—H16A0.9900
C7—H7B0.9900C16—H16B0.9900
C8—N31.334 (2)C17—C181.530 (2)
C8—C91.394 (2)C17—H17A0.9900
C9—C101.380 (2)C17—H17B0.9900
C9—H90.9500C18—H18A0.9900
C10—C111.383 (3)C18—H18B0.9900
N1—C1—C2113.59 (12)N1—C13—C18110.69 (13)
N1—C1—H1A108.8N1—C13—C14115.35 (12)
C2—C1—H1A108.8C18—C13—C14110.47 (13)
N1—C1—H1B108.8N1—C13—H13106.6
C2—C1—H1B108.8C18—C13—H13106.6
H1A—C1—H1B107.7C14—C13—H13106.6
N2—C2—C3122.37 (14)C15—C14—C13110.87 (14)
N2—C2—C1116.00 (13)C15—C14—H14A109.5
C3—C2—C1121.58 (14)C13—C14—H14A109.5
C4—C3—C2119.13 (15)C15—C14—H14B109.5
C4—C3—H3120.4C13—C14—H14B109.5
C2—C3—H3120.4H14A—C14—H14B108.1
C3—C4—C5119.17 (15)C14—C15—C16110.99 (14)
C3—C4—H4120.4C14—C15—H15A109.4
C5—C4—H4120.4C16—C15—H15A109.4
C6—C5—C4117.92 (15)C14—C15—H15B109.4
C6—C5—H5121.0C16—C15—H15B109.4
C4—C5—H5121.0H15A—C15—H15B108.0
N2—C6—C5123.87 (16)C17—C16—C15110.62 (14)
N2—C6—H6118.1C17—C16—H16A109.5
C5—C6—H6118.1C15—C16—H16A109.5
N1—C7—C8111.97 (12)C17—C16—H16B109.5
N1—C7—H7A109.2C15—C16—H16B109.5
C8—C7—H7A109.2H16A—C16—H16B108.1
N1—C7—H7B109.2C16—C17—C18111.50 (14)
C8—C7—H7B109.2C16—C17—H17A109.3
H7A—C7—H7B107.9C18—C17—H17A109.3
N3—C8—C9122.00 (15)C16—C17—H17B109.3
N3—C8—C7116.69 (14)C18—C17—H17B109.3
C9—C8—C7121.29 (14)H17A—C17—H17B108.0
C10—C9—C8119.52 (16)C13—C18—C17111.29 (14)
C10—C9—H9120.2C13—C18—H18A109.4
C8—C9—H9120.2C17—C18—H18A109.4
C9—C10—C11118.68 (17)C13—C18—H18B109.4
C9—C10—H10120.7C17—C18—H18B109.4
C11—C10—H10120.7H18A—C18—H18B108.0
C12—C11—C10118.01 (16)C1—N1—C7110.47 (12)
C12—C11—H11121.0C1—N1—C13112.17 (12)
C10—C11—H11121.0C7—N1—C13114.30 (12)
N3—C12—C11124.36 (17)C2—N2—C6117.52 (14)
N3—C12—H12117.8C8—N3—C12117.42 (15)
C11—C12—H12117.8
N1—C1—C2—N2−142.02 (14)C15—C16—C17—C18−55.53 (19)
N1—C1—C2—C340.6 (2)N1—C13—C18—C17175.48 (13)
N2—C2—C3—C4−1.6 (2)C14—C13—C18—C17−55.51 (17)
C1—C2—C3—C4175.56 (14)C16—C17—C18—C1355.43 (18)
C2—C3—C4—C50.6 (2)C2—C1—N1—C7−159.59 (13)
C3—C4—C5—C60.6 (2)C2—C1—N1—C1371.62 (17)
C4—C5—C6—N2−0.8 (3)C8—C7—N1—C173.28 (16)
N1—C7—C8—N3−140.81 (14)C8—C7—N1—C13−159.09 (13)
N1—C7—C8—C940.9 (2)C18—C13—N1—C1−159.74 (12)
N3—C8—C9—C101.0 (2)C14—C13—N1—C173.93 (15)
C7—C8—C9—C10179.14 (15)C18—C13—N1—C773.51 (16)
C8—C9—C10—C11−0.2 (3)C14—C13—N1—C7−52.83 (17)
C9—C10—C11—C12−0.6 (3)C3—C2—N2—C61.4 (2)
C10—C11—C12—N30.7 (3)C1—C2—N2—C6−175.90 (14)
N1—C13—C14—C15−176.97 (13)C5—C6—N2—C2−0.2 (2)
C18—C13—C14—C1556.58 (17)C9—C8—N3—C12−0.9 (2)
C13—C14—C15—C16−57.35 (18)C7—C8—N3—C12−179.15 (15)
C14—C15—C16—C1756.55 (19)C11—C12—N3—C80.1 (3)
D—H···AD—HH···AD···AD—H···A
C4—H4···N2i0.952.553.475 (2)166 (1)
C11—H11···N2ii0.952.643.511 (2)153 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯N2i 0.952.553.475 (2)166 (1)
C11—H11⋯N2ii 0.952.643.511 (2)153 (1)

Symmetry codes: (i) ; (ii) .

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Authors:  Tatsuya Fujii; Asako Naito; Syuhei Yamaguchi; Akira Wada; Yasuhiro Funahashi; Koichiro Jitsukawa; Shigenori Nagatomo; Teizo Kitagawa; Hideki Masuda
Journal:  Chem Commun (Camb)       Date:  2003-11-07       Impact factor: 6.222

2.  One-dimensional C-H...N hydrogen-bonded polymers in flexible tetrapyridyl systems.

Authors:  Allen Mambanda; Deogratius Jaganyi; Orde Q Munro
Journal:  Acta Crystallogr C       Date:  2007-10-24       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

5.  A kinetics and mechanistic study on the role of the structural rigidity of the linker on the substitution reactions of chelated dinuclear Pt(II) complexes.

Authors:  Allen Mambanda; Deogratius Jaganyi
Journal:  Dalton Trans       Date:  2011-11-17       Impact factor: 4.390

6.  N,N-Bis(2-pyridylmeth-yl)-tert-butyl-amine.

Authors:  Allen Mambanda; Deogratius Jaganyi; Kirsty Stewart
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-28

7.  Substitution behaviour of amine-bridged dinuclear Pt(II) complexes with bio-relevant nucleophiles.

Authors:  Hakan Ertürk; Joachim Maigut; Ralph Puchta; Rudi van Eldik
Journal:  Dalton Trans       Date:  2008-05-28       Impact factor: 4.390

8.  Influence of the bridging ligand on the substitution behaviour of dinuclear Pt(II) complexes. An experimental and theoretical approach.

Authors:  Hakan Ertürk; Andreas Hofmann; Ralph Puchta; Rudi van Eldik
Journal:  Dalton Trans       Date:  2007-04-04       Impact factor: 4.390

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