Literature DB >> 22798809

Di-tert-butyl 3,5-dimethyl-1H-pyrrole-2,4-dicarboxyl-ate.

Zhao-Po Zhang1, Wei-Na Wu.   

Abstract

In the title mol-ecule, C(16)H(25)NO(4), the non-H atoms, except for the two tert-butyl groups, are roughly planar (r.m.s. deviation of the non-H atoms = 0.086 Å). In the crystal, mol-ecules are linked into inversion dimers by pairs of N-H⋯O hydrogen bonds, forming R(2) (2)(10) ring motifs.

Entities:  

Year:  2012        PMID: 22798809      PMCID: PMC3393944          DOI: 10.1107/S1600536812026700

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For complexes of Schiff bases containing a pyrrole unit, see: Wu et al. (2003 ▶); Wang et al. (2008 ▶). For the synthesis of the title compound, see: Sun et al. (2003 ▶).

Experimental

Crystal data

C16H25NO4 M = 295.37 Triclinic, a = 5.8976 (10) Å b = 11.511 (2) Å c = 13.460 (2) Å α = 103.956 (4)° β = 90.078 (3)° γ = 104.804 (3)° V = 855.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.21 × 0.19 × 0.16 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.983, T max = 0.987 4496 measured reflections 2989 independent reflections 1704 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.150 S = 1.04 2989 reflections 191 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812026700/vm2177sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026700/vm2177Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812026700/vm2177Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H25NO4Z = 2
Mr = 295.37F(000) = 320
Triclinic, P1Dx = 1.147 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8976 (10) ÅCell parameters from 771 reflections
b = 11.511 (2) Åθ = 3.2–20.5°
c = 13.460 (2) ŵ = 0.08 mm1
α = 103.956 (4)°T = 296 K
β = 90.078 (3)°Plate, colorless
γ = 104.804 (3)°0.21 × 0.19 × 0.16 mm
V = 855.5 (3) Å3
Bruker SMART CCD diffractometer2989 independent reflections
Radiation source: fine-focus sealed tube1704 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −6→6
Tmin = 0.983, Tmax = 0.987k = −13→13
4496 measured reflectionsl = −16→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0557P)2 + 0.202P] where P = (Fo2 + 2Fc2)/3
2989 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.2311 (4)0.1845 (2)−0.08222 (19)0.0471 (7)
C2−0.1610 (4)0.2579 (2)−0.14921 (19)0.0476 (7)
C3−0.3401 (5)0.2180 (2)−0.23018 (19)0.0478 (7)
C4−0.5147 (5)0.1215 (2)−0.2090 (2)0.0484 (7)
C50.0637 (5)0.3586 (3)−0.1403 (2)0.0673 (9)
H5A0.15270.3670−0.07810.101*
H5B0.02760.4356−0.13930.101*
H5C0.15400.3375−0.19800.101*
C6−0.7463 (5)0.0472 (3)−0.2626 (2)0.0691 (9)
H6A−0.8212−0.0121−0.22550.104*
H6B−0.72290.0045−0.33080.104*
H6C−0.84400.1015−0.26600.104*
C7−0.1316 (4)0.1787 (2)0.0145 (2)0.0479 (7)
C80.1962 (5)0.2870 (3)0.1451 (2)0.0537 (7)
C90.2769 (5)0.1727 (3)0.1469 (2)0.0726 (9)
H9A0.37210.15530.09030.109*
H9B0.14240.10320.14150.109*
H9C0.36740.18700.21010.109*
C100.0441 (5)0.3201 (3)0.2315 (2)0.0693 (9)
H10A−0.00050.39350.22740.104*
H10B0.13010.33510.29600.104*
H10C−0.09440.25290.22630.104*
C110.4029 (6)0.3960 (3)0.1429 (3)0.0819 (10)
H11A0.34690.46700.14170.123*
H11B0.48610.37540.08270.123*
H11C0.50670.41470.20300.123*
C12−0.3408 (5)0.2728 (3)−0.3174 (2)0.0549 (7)
C13−0.5671 (6)0.2464 (3)−0.4787 (2)0.0673 (9)
C14−0.3574 (7)0.2685 (4)−0.5428 (3)0.1043 (13)
H14A−0.31030.1930−0.56570.156*
H14B−0.22980.3317−0.50220.156*
H14C−0.39900.2948−0.60120.156*
C15−0.6498 (7)0.3616 (4)−0.4426 (3)0.1023 (13)
H15A−0.78270.3448−0.40230.153*
H15B−0.69430.3873−0.50090.153*
H15C−0.52520.4265−0.40170.153*
C16−0.7630 (8)0.1391 (4)−0.5360 (3)0.1329 (19)
H16A−0.89320.1267−0.49350.199*
H16B−0.70850.0654−0.55360.199*
H16C−0.81230.1567−0.59760.199*
N1−0.4459 (4)0.10303 (19)−0.12068 (16)0.0492 (6)
H1A−0.526 (2)0.0471 (17)−0.0913 (9)0.059*
O1−0.2209 (3)0.10146 (17)0.06093 (14)0.0565 (5)
O20.0654 (3)0.26788 (16)0.04613 (13)0.0594 (6)
O3−0.2064 (4)0.3672 (2)−0.32547 (15)0.0789 (7)
O4−0.5120 (4)0.20430 (18)−0.38930 (14)0.0728 (7)
U11U22U33U12U13U23
C10.0392 (15)0.0471 (16)0.0494 (16)0.0026 (13)−0.0034 (13)0.0109 (13)
C20.0431 (16)0.0459 (16)0.0501 (16)0.0040 (13)0.0011 (13)0.0133 (13)
C30.0487 (17)0.0433 (15)0.0484 (16)0.0059 (13)−0.0017 (13)0.0123 (12)
C40.0481 (17)0.0447 (16)0.0490 (16)0.0062 (13)−0.0060 (13)0.0117 (13)
C50.0580 (19)0.069 (2)0.066 (2)−0.0086 (16)−0.0064 (16)0.0271 (16)
C60.062 (2)0.065 (2)0.068 (2)−0.0084 (16)−0.0152 (16)0.0191 (16)
C70.0364 (15)0.0501 (16)0.0511 (16)0.0022 (13)−0.0015 (13)0.0109 (14)
C80.0435 (16)0.0598 (18)0.0503 (17)0.0019 (14)−0.0090 (13)0.0121 (14)
C90.056 (2)0.088 (2)0.078 (2)0.0266 (18)−0.0060 (16)0.0190 (18)
C100.068 (2)0.070 (2)0.064 (2)0.0160 (17)0.0038 (17)0.0075 (16)
C110.058 (2)0.089 (2)0.079 (2)−0.0151 (18)−0.0104 (17)0.0205 (18)
C120.0551 (18)0.0514 (18)0.0541 (17)0.0048 (15)−0.0033 (15)0.0152 (14)
C130.067 (2)0.075 (2)0.0572 (19)0.0036 (17)−0.0113 (17)0.0290 (16)
C140.103 (3)0.154 (4)0.063 (2)0.040 (3)0.009 (2)0.033 (2)
C150.105 (3)0.133 (4)0.092 (3)0.050 (3)0.004 (2)0.050 (2)
C160.137 (4)0.125 (3)0.107 (3)−0.041 (3)−0.073 (3)0.053 (3)
N10.0457 (14)0.0490 (13)0.0491 (13)0.0005 (11)−0.0029 (11)0.0181 (11)
O10.0495 (12)0.0582 (12)0.0572 (12)−0.0030 (9)−0.0060 (9)0.0240 (10)
O20.0486 (12)0.0636 (13)0.0566 (12)−0.0083 (10)−0.0105 (9)0.0220 (9)
O30.0853 (16)0.0726 (15)0.0676 (14)−0.0133 (13)−0.0132 (12)0.0327 (11)
O40.0795 (15)0.0684 (14)0.0620 (13)−0.0075 (11)−0.0240 (11)0.0292 (11)
C1—C21.375 (3)C9—H9C0.9600
C1—N11.381 (3)C10—H10A0.9600
C1—C71.450 (4)C10—H10B0.9600
C2—C31.422 (3)C10—H10C0.9600
C2—C51.504 (3)C11—H11A0.9600
C3—C41.394 (3)C11—H11B0.9600
C3—C121.462 (4)C11—H11C0.9600
C4—N11.337 (3)C12—O31.200 (3)
C4—C61.490 (3)C12—O41.342 (3)
C5—H5A0.9600C13—O41.466 (3)
C5—H5B0.9600C13—C151.502 (5)
C5—H5C0.9600C13—C161.505 (4)
C6—H6A0.9600C13—C141.512 (5)
C6—H6B0.9600C14—H14A0.9600
C6—H6C0.9600C14—H14B0.9600
C7—O11.220 (3)C14—H14C0.9600
C7—O21.328 (3)C15—H15A0.9600
C8—O21.479 (3)C15—H15B0.9600
C8—C101.506 (4)C15—H15C0.9600
C8—C91.514 (4)C16—H16A0.9600
C8—C111.516 (4)C16—H16B0.9600
C9—H9A0.9600C16—H16C0.9600
C9—H9B0.9600N1—H1A0.873 (17)
C2—C1—N1107.7 (2)C8—C10—H10C109.5
C2—C1—C7134.1 (2)H10A—C10—H10C109.5
N1—C1—C7118.2 (2)H10B—C10—H10C109.5
C1—C2—C3106.5 (2)C8—C11—H11A109.5
C1—C2—C5126.9 (2)C8—C11—H11B109.5
C3—C2—C5126.6 (2)H11A—C11—H11B109.5
C4—C3—C2107.8 (2)C8—C11—H11C109.5
C4—C3—C12127.0 (2)H11A—C11—H11C109.5
C2—C3—C12125.2 (2)H11B—C11—H11C109.5
N1—C4—C3107.2 (2)O3—C12—O4123.1 (3)
N1—C4—C6120.3 (2)O3—C12—C3125.1 (3)
C3—C4—C6132.5 (2)O4—C12—C3111.8 (2)
C2—C5—H5A109.5O4—C13—C15108.9 (3)
C2—C5—H5B109.5O4—C13—C16102.4 (2)
H5A—C5—H5B109.5C15—C13—C16111.3 (3)
C2—C5—H5C109.5O4—C13—C14111.3 (3)
H5A—C5—H5C109.5C15—C13—C14111.4 (3)
H5B—C5—H5C109.5C16—C13—C14111.2 (3)
C4—C6—H6A109.5C13—C14—H14A109.5
C4—C6—H6B109.5C13—C14—H14B109.5
H6A—C6—H6B109.5H14A—C14—H14B109.5
C4—C6—H6C109.5C13—C14—H14C109.5
H6A—C6—H6C109.5H14A—C14—H14C109.5
H6B—C6—H6C109.5H14B—C14—H14C109.5
O1—C7—O2124.6 (2)C13—C15—H15A109.5
O1—C7—C1123.5 (2)C13—C15—H15B109.5
O2—C7—C1111.9 (2)H15A—C15—H15B109.5
O2—C8—C10109.2 (2)C13—C15—H15C109.5
O2—C8—C9109.9 (2)H15A—C15—H15C109.5
C10—C8—C9112.8 (2)H15B—C15—H15C109.5
O2—C8—C11101.8 (2)C13—C16—H16A109.5
C10—C8—C11111.4 (2)C13—C16—H16B109.5
C9—C8—C11111.2 (3)H16A—C16—H16B109.5
C8—C9—H9A109.5C13—C16—H16C109.5
C8—C9—H9B109.5H16A—C16—H16C109.5
H9A—C9—H9B109.5H16B—C16—H16C109.5
C8—C9—H9C109.5C4—N1—C1110.9 (2)
H9A—C9—H9C109.5C4—N1—H1A124.5 (8)
H9B—C9—H9C109.5C1—N1—H1A124.6 (8)
C8—C10—H10A109.5C7—O2—C8122.9 (2)
C8—C10—H10B109.5C12—O4—C13122.3 (2)
H10A—C10—H10B109.5
N1—C1—C2—C3−0.3 (3)C2—C3—C12—O3−9.7 (5)
C7—C1—C2—C3−179.0 (3)C4—C3—C12—O4−12.0 (4)
N1—C1—C2—C5−178.9 (2)C2—C3—C12—O4170.3 (2)
C7—C1—C2—C52.5 (5)C3—C4—N1—C10.2 (3)
C1—C2—C3—C40.4 (3)C6—C4—N1—C1−177.7 (2)
C5—C2—C3—C4179.0 (3)C2—C1—N1—C40.1 (3)
C1—C2—C3—C12178.5 (3)C7—C1—N1—C4179.0 (2)
C5—C2—C3—C12−3.0 (4)O1—C7—O2—C8−2.5 (4)
C2—C3—C4—N1−0.3 (3)C1—C7—O2—C8176.8 (2)
C12—C3—C4—N1−178.3 (3)C10—C8—O2—C7−63.0 (3)
C2—C3—C4—C6177.1 (3)C9—C8—O2—C761.2 (3)
C12—C3—C4—C6−0.9 (5)C11—C8—O2—C7179.2 (2)
C2—C1—C7—O1−177.3 (3)O3—C12—O4—C13−7.2 (5)
N1—C1—C7—O14.1 (4)C3—C12—O4—C13172.8 (3)
C2—C1—C7—O23.3 (4)C15—C13—O4—C12−63.2 (4)
N1—C1—C7—O2−175.2 (2)C16—C13—O4—C12178.9 (3)
C4—C3—C12—O3168.0 (3)C14—C13—O4—C1260.0 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.873 (17)2.087 (18)2.933 (3)163.2 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.873 (17)2.087 (18)2.933 (3)163.2 (12)

Symmetry code: (i) .

  4 in total

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Authors:  Li Sun; Chris Liang; Sheri Shirazian; Yong Zhou; Todd Miller; Jean Cui; Juri Y Fukuda; Ji-Yu Chu; Asaad Nematalla; Xueyan Wang; Hui Chen; Anand Sistla; Tony C Luu; Flora Tang; James Wei; Cho Tang
Journal:  J Med Chem       Date:  2003-03-27       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis, characterization and DNA-binding properties of four Zn(II) complexes with bis(pyrrol-2-yl-methyleneamine) ligands.

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  4 in total

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