Literature DB >> 22798799

4,4',6,6'-Tetra-tert-butyl-2,2'-[1,3-diazinane-1,3-diylbis(methyl-ene)]diphenol 0.25-hydrate.

Manman Zhang1, Li Li, Fugen Yuan, Hui Qian.   

Abstract

The title compound, C(34)H(54)N(2)O(2)·0.25H(2)O, the organic mol-ecule, a potential tetra-dentate ligand with a bulky phenolic donor, has overall mirror symmetry. A partially occupied water mol-ecule of solvation is present in the lattice. The six-membered 1,3-diazinane ring displays a chair conformation. An intra-molecular O-H⋯N hydrogen bond ocurs. In the crystal, mol-ecules are linked by O-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22798799      PMCID: PMC3393934          DOI: 10.1107/S1600536812026505

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For amino­bis­phenolato ligands in coordination chemistry, see: Wichmann et al. (2012 ▶). For applications of their metal complexes, see: Barroso et al. (2010 ▶); Wong et al. (2010 ▶); Kannan et al. (2008 ▶); Pang et al. (2008 ▶); Tshuva et al. (2001 ▶). For background to the synthetic procedure and related structures, see: Hancock et al. (2011 ▶); Manna et al. (2008 ▶); Mohanty et al. (2008 ▶); Guo et al. (2003 ▶).

Experimental

Crystal data

C34H54N2O2·0.25H2O M = 527.30 Orthorhombic, a = 8.7292 (8) Å b = 37.428 (3) Å c = 10.1806 (9) Å V = 3326.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.33 × 0.24 × 0.16 mm

Data collection

Bruker SMART APEXII CCD diffractometer 29196 measured reflections 3908 independent reflections 3411 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.130 S = 1.05 3908 reflections 180 parameters 1 restraint H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812026505/fj2558sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026505/fj2558Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C34H54N2O2·0.25H2OF(000) = 1162
Mr = 527.30Dx = 1.053 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 9920 reflections
a = 8.7292 (8) Åθ = 2.6–27.6°
b = 37.428 (3) ŵ = 0.07 mm1
c = 10.1806 (9) ÅT = 296 K
V = 3326.1 (5) Å3Prism, colorless
Z = 40.33 × 0.24 × 0.16 mm
Bruker SMART APEXII CCD diffractometer3411 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
Graphite monochromatorθmax = 27.6°, θmin = 1.6°
phi and ω scansh = −11→11
29196 measured reflectionsk = −48→48
3908 independent reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.130w = 1/[σ2(Fo2) + (0.0634P)2 + 1.2767P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.038
3908 reflectionsΔρmax = 0.38 e Å3
180 parametersΔρmin = −0.31 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0034 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.24037 (12)0.78185 (2)0.40084 (10)0.0226 (2)
O10.50878 (10)0.81077 (2)0.47464 (9)0.0290 (2)
H10.45720.79560.43690.044*
O20.7322 (8)0.75000.5233 (7)0.0500 (15)*0.25
H20.68800.72990.51330.075*0.25
C10.44073 (13)0.84373 (3)0.46035 (11)0.0218 (2)
C20.30352 (13)0.84657 (3)0.38874 (11)0.0224 (2)
C30.23273 (13)0.87966 (3)0.37546 (12)0.0228 (2)
H3A0.14080.88120.32970.027*
C40.29645 (13)0.91060 (3)0.42917 (11)0.0215 (2)
C50.43413 (13)0.90681 (3)0.49783 (11)0.0220 (2)
H5A0.47830.92720.53350.026*
C60.50974 (13)0.87414 (3)0.51622 (11)0.0211 (2)
C70.21487 (13)0.94668 (3)0.41266 (12)0.0248 (3)
C80.05775 (16)0.94463 (4)0.47962 (16)0.0397 (3)
H8A0.00560.96710.46970.060*
H8B0.07120.93950.57130.060*
H8C−0.00190.92600.43970.060*
C90.19124 (19)0.95464 (4)0.26617 (16)0.0429 (4)
H9A0.28900.95600.22320.064*
H9B0.13860.97700.25650.064*
H9C0.13140.93590.22720.064*
C100.30511 (17)0.97759 (4)0.4729 (2)0.0484 (4)
H10A0.40380.97920.43170.073*
H10B0.31800.97350.56540.073*
H10C0.25030.99950.45960.073*
C110.66220 (13)0.87198 (3)0.59218 (11)0.0240 (3)
C120.71429 (15)0.90887 (4)0.64144 (14)0.0334 (3)
H12A0.63750.91870.69850.050*
H12B0.72900.92450.56780.050*
H12C0.80890.90650.68870.050*
C130.64494 (16)0.84776 (4)0.71373 (13)0.0365 (3)
H13A0.56610.85710.76980.055*
H13B0.74010.84700.76090.055*
H13C0.61780.82410.68620.055*
C140.78871 (14)0.85726 (4)0.50186 (12)0.0299 (3)
H14A0.79920.87250.42650.045*
H14B0.76190.83360.47380.045*
H14C0.88400.85650.54890.045*
C150.23842 (15)0.81429 (3)0.31813 (12)0.0261 (3)
H15A0.13380.81930.29190.031*
H15B0.29760.80990.23910.031*
C160.2173 (2)0.75000.32086 (16)0.0228 (3)
H16A0.28910.75000.24810.027*
H16B0.11430.75000.28510.027*
C170.12559 (16)0.78340 (3)0.50660 (13)0.0310 (3)
H17A0.02370.78500.46900.037*
H17B0.14260.80450.56010.037*
C180.1380 (3)0.75000.59142 (19)0.0369 (4)
H18A0.23540.75000.63730.044*
H18B0.05690.75000.65650.044*
U11U22U33U12U13U23
N10.0289 (5)0.0148 (4)0.0242 (5)−0.0005 (3)−0.0016 (4)−0.0007 (3)
O10.0287 (4)0.0196 (4)0.0387 (5)0.0034 (3)−0.0068 (4)0.0017 (3)
C10.0231 (5)0.0188 (5)0.0234 (5)0.0019 (4)0.0001 (4)0.0021 (4)
C20.0261 (6)0.0176 (5)0.0235 (5)−0.0020 (4)−0.0028 (4)0.0005 (4)
C30.0220 (5)0.0199 (5)0.0265 (6)−0.0006 (4)−0.0044 (4)0.0013 (4)
C40.0203 (5)0.0189 (5)0.0252 (6)−0.0002 (4)0.0010 (4)−0.0002 (4)
C50.0211 (5)0.0205 (5)0.0242 (5)−0.0030 (4)0.0009 (4)−0.0028 (4)
C60.0195 (5)0.0244 (5)0.0195 (5)−0.0009 (4)0.0000 (4)0.0006 (4)
C70.0225 (5)0.0167 (5)0.0352 (6)0.0008 (4)−0.0001 (5)−0.0008 (4)
C80.0311 (7)0.0340 (7)0.0540 (9)0.0073 (5)0.0090 (6)0.0041 (6)
C90.0556 (9)0.0304 (6)0.0429 (8)0.0106 (6)0.0013 (7)0.0108 (6)
C100.0369 (8)0.0217 (6)0.0866 (13)0.0031 (5)−0.0134 (8)−0.0140 (7)
C110.0202 (5)0.0308 (6)0.0210 (5)0.0006 (4)−0.0017 (4)0.0005 (4)
C120.0252 (6)0.0406 (7)0.0345 (7)−0.0015 (5)−0.0065 (5)−0.0092 (6)
C130.0314 (7)0.0525 (8)0.0257 (6)−0.0013 (6)−0.0032 (5)0.0105 (6)
C140.0218 (6)0.0394 (7)0.0285 (6)0.0023 (5)−0.0008 (5)−0.0026 (5)
C150.0343 (6)0.0166 (5)0.0274 (6)−0.0020 (4)−0.0081 (5)0.0016 (4)
C160.0291 (8)0.0159 (7)0.0233 (8)0.000−0.0030 (6)0.000
C170.0370 (7)0.0227 (6)0.0333 (7)0.0019 (5)0.0059 (5)−0.0046 (5)
C180.0523 (12)0.0298 (9)0.0286 (9)0.0000.0117 (9)0.000
N1—C161.4575 (13)C10—H10A0.9600
N1—C171.4719 (16)C10—H10B0.9600
N1—C151.4777 (14)C10—H10C0.9600
O1—C11.3770 (13)C11—C141.5390 (17)
O1—H10.8200C11—C121.5379 (17)
O2—H20.8500C11—C131.5414 (17)
C1—C21.4062 (16)C12—H12A0.9600
C1—C61.4078 (15)C12—H12B0.9600
C2—C31.3909 (15)C12—H12C0.9600
C2—C151.5162 (15)C13—H13A0.9600
C3—C41.3962 (15)C13—H13B0.9600
C3—H3A0.9300C13—H13C0.9600
C4—C51.3975 (16)C14—H14A0.9600
C4—C71.5359 (15)C14—H14B0.9600
C5—C61.4023 (16)C14—H14C0.9600
C5—H5A0.9300C15—H15A0.9700
C6—C111.5414 (15)C15—H15B0.9700
C7—C101.5283 (17)C16—N1i1.4575 (13)
C7—C91.535 (2)C16—H16A0.9700
C7—C81.5335 (18)C16—H16B0.9700
C8—H8A0.9600C17—C181.5231 (16)
C8—H8B0.9600C17—H17A0.9700
C8—H8C0.9600C17—H17B0.9700
C9—H9A0.9600C18—C17i1.5231 (16)
C9—H9B0.9600C18—H18A0.9700
C9—H9C0.9600C18—H18B0.9700
C16—N1—C17110.29 (10)C14—C11—C13109.83 (10)
C16—N1—C15110.62 (9)C12—C11—C13107.17 (10)
C17—N1—C15112.13 (9)C14—C11—C6109.79 (9)
C1—O1—H1109.5C12—C11—C6111.83 (10)
O1—C1—C2119.33 (10)C13—C11—C6110.44 (10)
O1—C1—C6119.81 (10)C11—C12—H12A109.5
C2—C1—C6120.85 (10)C11—C12—H12B109.5
C3—C2—C1119.74 (10)H12A—C12—H12B109.5
C3—C2—C15119.80 (10)C11—C12—H12C109.5
C1—C2—C15120.32 (10)H12A—C12—H12C109.5
C2—C3—C4121.57 (10)H12B—C12—H12C109.5
C2—C3—H3A119.2C11—C13—H13A109.5
C4—C3—H3A119.2C11—C13—H13B109.5
C3—C4—C5117.02 (10)H13A—C13—H13B109.5
C3—C4—C7120.11 (10)C11—C13—H13C109.5
C5—C4—C7122.87 (10)H13A—C13—H13C109.5
C4—C5—C6124.06 (10)H13B—C13—H13C109.5
C4—C5—H5A118.0C11—C14—H14A109.5
C6—C5—H5A118.0C11—C14—H14B109.5
C5—C6—C1116.73 (10)H14A—C14—H14B109.5
C5—C6—C11121.28 (10)C11—C14—H14C109.5
C1—C6—C11121.99 (10)H14A—C14—H14C109.5
C10—C7—C9108.21 (12)H14B—C14—H14C109.5
C10—C7—C8108.69 (11)N1—C15—C2112.34 (9)
C9—C7—C8108.76 (11)N1—C15—H15A109.1
C10—C7—C4112.50 (10)C2—C15—H15A109.1
C9—C7—C4109.83 (10)N1—C15—H15B109.1
C8—C7—C4108.78 (10)C2—C15—H15B109.1
C7—C8—H8A109.5H15A—C15—H15B107.9
C7—C8—H8B109.5N1—C16—N1i109.75 (13)
H8A—C8—H8B109.5N1—C16—H16A109.7
C7—C8—H8C109.5N1i—C16—H16A109.7
H8A—C8—H8C109.5N1—C16—H16B109.7
H8B—C8—H8C109.5N1i—C16—H16B109.7
C7—C9—H9A109.5H16A—C16—H16B108.2
C7—C9—H9B109.5N1—C17—C18109.51 (11)
H9A—C9—H9B109.5N1—C17—H17A109.8
C7—C9—H9C109.5C18—C17—H17A109.8
H9A—C9—H9C109.5N1—C17—H17B109.8
H9B—C9—H9C109.5C18—C17—H17B109.8
C7—C10—H10A109.5H17A—C17—H17B108.2
C7—C10—H10B109.5C17i—C18—C17110.30 (15)
H10A—C10—H10B109.5C17i—C18—H18A109.6
C7—C10—H10C109.5C17—C18—H18A109.6
H10A—C10—H10C109.5C17i—C18—H18B109.6
H10B—C10—H10C109.5C17—C18—H18B109.6
C14—C11—C12107.71 (10)H18A—C18—H18B108.1
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.822.002.6880 (13)142
O2—H2···O1i0.852.223.036 (5)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.822.002.6880 (13)142
O2—H2⋯O1i 0.852.223.036 (5)161

Symmetry code: (i) .

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