Literature DB >> 22798653

Sphingopyxis rigui sp. nov. and Sphingopyxis wooponensis sp. nov., isolated from wetland freshwater, and emended description of the genus Sphingopyxis.

Keun Sik Baik1, Han Na Choe1, Seong Chan Park1, Yeoung Min Hwang1, Eun Mi Kim2, Chul Park3, Chi Nam Seong1.   

Abstract

Two yellow-pigmented, Gram-reaction-negative strains, designated 01SU5-P(T) and 03SU3-P(T), were isolated from the freshwater of Woopo wetland, Republic of Korea. Both strains were aerobic, non-motile and catalase-negative. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the two isolates belong to the genus Sphingopyxis, showing the highest level of sequence similarity with respect to Sphingopyxis witflariensis W-50(T) (95.4-95.7 %). The two novel isolates shared 99.4 % sequence similarity. DNA-DNA hybridization between the isolates and the type strain of S. witflariensis clearly suggested that strains 01SU5-P(T) and 03SU3-P(T) represent two separate novel species in the genus Sphingopyxis. The two strains displayed different fingerprints after PCR analysis using the repetitive primers BOX, ERIC and REP. Several phenotypic characteristics served to differentiate these two isolates from recognized members of the genus Sphingopyxis. The data from the polyphasic study presented here indicated that strains 01SU5-P(T) and 03SU3-P(T) should be classified as representing novel species in the genus Sphingopyxis, for which the names Sphingopyxis rigui sp. nov. and Sphingopyxis wooponensis sp. nov., respectively, are proposed. The type strain of Sphingopyxis rigui sp. nov. is 01SU5-P(T) ( = KCTC 23326(T) = JCM 17509(T)) and the type strain of Sphingopyxis wooponensis sp. nov. is 03SU3-P(T) ( = KCTC 23340(T) = JCM 17547(T)).

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22798653     DOI: 10.1099/ijs.0.044057-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  5 in total

1.  Gene probing reveals the widespread distribution, diversity and abundance of isoprene-degrading bacteria in the environment.

Authors:  Ornella Carrión; Nasmille L Larke-Mejía; Lisa Gibson; Muhammad Farhan Ul Haque; Javier Ramiro-García; Terry J McGenity; J Colin Murrell
Journal:  Microbiome       Date:  2018-12-07       Impact factor: 14.650

2.  Draft Genome Sequences of Sphingomonadaceae Strains Isolated from a Freshwater Lake.

Authors:  Shang Shen; Tetsunobu Anazawa; Tomonari Matsuda; Yoshihisa Shimizu
Journal:  Microbiol Resour Announc       Date:  2022-04-06

3.  Complete Genome Sequence of a Phage Infecting Sphingomonadaceae.

Authors:  Shang Shen; Tetsunobu Anazawa; Tomonari Matsuda; Yoshihisa Shimizu
Journal:  Microbiol Resour Announc       Date:  2022-06-02

4.  Draft Genome Sequence of Two Sphingopyxis sp. Strains, Dominant Members of the Bacterial Community Associated with a Drinking Water Distribution System Simulator.

Authors:  Vicente Gomez-Alvarez; Stacy Pfaller; Randy P Revetta
Journal:  Genome Announc       Date:  2016-03-31

5.  Phylogenetically Diverse Aerobic Anoxygenic Phototrophic Bacteria Isolated from Epilithic Biofilms in Tama River, Japan.

Authors:  Setsuko Hirose; Katsumi Matsuura; Shin Haruta
Journal:  Microbes Environ       Date:  2016-07-23       Impact factor: 2.912

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.