Literature DB >> 22791911

Probability of detecting nematode infestations for quarantine sampling with imperfect extraction efficacy.

Peichen Chen1, Shih-Chia Liu, Hung-I Liu, Tse-Wei Chen, Kuo-Szu Chiang.   

Abstract

For quarantine sampling, it is of fundamental importance to determine the probability of finding an infestation when a specified number of units are inspected. In general, current sampling procedures assume 100% probability (perfect) of detecting a pest if it is present within a unit. Ideally, a nematode extraction method should remove all stages of all species with 100% efficiency regardless of season, temperature, or other environmental conditions; in practice however, no method approaches these criteria. In this study we determined the probability of detecting nematode infestations for quarantine sampling with imperfect extraction efficacy. Also, the required sample and the risk involved in detecting nematode infestations with imperfect extraction efficacy are presented. Moreover, we developed a computer program to calculate confidence levels for different scenarios with varying proportions of infestation and efficacy of detection. In addition, a case study, presenting the extraction efficacy of the modified Baermann's Funnel method on Aphelenchoides besseyi, is used to exemplify the use of our program to calculate the probability of detecting nematode infestations in quarantine sampling with imperfect extraction efficacy. The result has important implications for quarantine programs and highlights the need for a very large number of samples if perfect extraction efficacy is not achieved in such programs. We believe that the results of the study will be useful for the determination of realistic goals in the implementation of quarantine sampling.

Entities:  

Keywords:  Monte Carlo simulation method; Quarantine sampling; binomial distribution; detecting nematode infestations; hypergeometric distribution; modified Baermann's Funnel method

Year:  2011        PMID: 22791911      PMCID: PMC3380480     

Source DB:  PubMed          Journal:  J Nematol        ISSN: 0022-300X            Impact factor:   1.402


  10 in total

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4.  Estimation of diagnostic-test sensitivity and specificity through Bayesian modeling.

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Review 5.  Frequentist and Bayesian approaches to prevalence estimation using examples from Johne's disease.

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6.  On the methodology of nematode extraction from field samples: comparison of methods for soil extraction.

Authors:  D R Viglierchio; R V Schmitt
Journal:  J Nematol       Date:  1983-07       Impact factor: 1.402

7.  The Monte Carlo method.

Authors:  N METROPOLIS; S ULAM
Journal:  J Am Stat Assoc       Date:  1949-09       Impact factor: 5.033

8.  Uncertainty and variability analysis in multiplicative risk models.

Authors:  S N Rai; D Krewski
Journal:  Risk Anal       Date:  1998-02       Impact factor: 4.000

9.  Assessment of nematode community structure as a bioindicator in river monitoring.

Authors:  H C Wu; P C Chen; T T Tsay
Journal:  Environ Pollut       Date:  2009-12-08       Impact factor: 8.071

10.  Accelerated movement of nematodes from soil in baermann funnels with temperature gradients.

Authors:  A F Robinson; C M Heald
Journal:  J Nematol       Date:  1989-07       Impact factor: 1.402

  10 in total
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1.  Occupancy modeling for improved accuracy and understanding of pathogen prevalence and dynamics.

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  1 in total

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