| Literature DB >> 22791048 |
Rong Zhang1, Tomoaki Ichijo, Yong-Lu Huang, Jia-Chang Cai, Hong-Wei Zhou, Nobuyasu Yamaguchi, Masao Nasu, Gong-Xiang Chen.
Abstract
We investigated the prevalence of qnr and aac(6')-Ib-cr genes in water-borne environmental bacteria and in clinical isolates of Enterobacteriaceae, as well as the subtypes of qnr. Environmental bacteria were isolated from surface water samples obtained from 10 different locations in Hangzhou City, and clinical isolates of Citrobacter freundii were isolated from several hospitals in four cities in China. qnrA, qnrB, qnrS, and aac(6')-Ib-cr genes were screened using PCR, and the genotypes were analyzed by DNA sequencing. Ten of the 78 Gram-negative bacilli isolated from water samples were C. freundii and 80% of these isolates carried the qnrB gene. qnrS1 and aac(6')-Ib-cr genes were detected in two Escherichia coli isolates and qnrS2 was detected in one species, Aeromonas punctata. The qnr and aac(6')-Ib-cr genes were present in 75 (72.8%) and 12 (11.6%) of 103 clinical isolates of C. freundii, respectively. Of the clinical C. freundii isolates with the qnr gene, 65 isolates (63.1%) carried qnrB, but only three (2.9%) and one (1.0%) carried qnrA1 and qnrS2, respectively, while five isolates carried both qnrA1 and qnrB, and one isolate carried both qnrS1 and qnrB. The qnrB9 gene was the dominant qnrB subtype, followed by qnrB8 and qnrB6. Southern hybridization studies indicated that the qnr genes are located on different plasmids. Plasmids isolated from both environmental and clinical C. freundii isolates appeared to be homogenous.Entities:
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Year: 2012 PMID: 22791048 PMCID: PMC4036021 DOI: 10.1264/jsme2.me11308
Source DB: PubMed Journal: Microbes Environ ISSN: 1342-6311 Impact factor: 2.912
Species distribution of bacteria isolated from aquatic environments and their MICs of ciprofloxacin, levofloxacin and nalidixic acid (μg mL−1)
| Strain | No. | Ciprofloxacin | Levofloxacin | Nalidixic acid | Resource | |||
|---|---|---|---|---|---|---|---|---|
|
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| MIC, or MIC50/MIC90 | MIC Range | MIC, or MIC50/MIC90 | MIC Range | MIC, or MIC50/MIC90 | MIC Range | |||
| 10 | ≤0.125/0.25 | ≤0.125~64 | 0.125/0.25 | ≤0.125~1 | 4/8 | 2~16 | WL, QTR, JHGC, XXW, JFR, HJCL | |
| 9 | 0.25/64 | ≤0.125~64 | 0.03/2 | 0.03~2 | 4/>256 | 1~>256 | WL, JHGC, JFR, HJCL, JXR | |
| 6 | ≤0.125 | ≤0.125 | 0.03/0.06 | 0.03~0.06 | 2/4 | 0.5~4 | QTR, XXW, JFR, HJCL, JXR | |
| 2 | ≤0.125 | ≤0.125 | 0.03 | 0.03 | 2 | 2 | XXW, JXR | |
| 1 | ≤0.125 | — | 0.06 | — | 2 | — | HJCL | |
| 1 | 0.25 | — | 0.06 | — | 1 | — | HJCL | |
| 1 | ≤0.125 | — | 0.05 | — | 1 | — | HJCL | |
| 1 | ≤0.125 | — | 0.06 | — | 128 | — | JFR | |
| 2 | ≤0.125 | ≤0.125 | ≤0.015/0.03 | ≤0.015~0.03 | 1/4 | 1~4 | QTR, JFR | |
| 21 | 0.25/16 | 0.125~32 | 0.25/16 | 0.125~16 | 128/>256 | 64~>256 | WL, JHGC, XXW, JFR, HJCL, JXR, TSR, FQCS, FH | |
| Acinetobacter spp. | 10 | 0.5/16 | ≤0.125~32 | 0.06/0.5 | 0.06~1 | 2/64 | 0.5~128 | QTR, XXW, JXR, TSR, FQCS |
| 10 | ≤0.125/1 | ≤0.125~32 | 0.06/0.5 | 0.06~1 | 1 | 0.5~1 | WL, QTR, JHGH, JFR, HJCL, JXR, TSR | |
| 2 | ≤0.125 | ≤0.125~0.25 | ≤0.015 | ≤0.015 | 1 | 1 | WL, TSR | |
| 2 | ≤0.125 | ≤0.125 | ≤0.015 | ≤0.015 | 1 | 1 | HJCL | |
WL, West Lake; QTR, Qiantang River; JHGC, Jinghang Grand Canal; XXW, Xixi Wetland; JFR, Jiefang River; HJCL, Huajiachi Lake; JXR, Jiuxi River; TSR, Tiesha River; FQCS, fountain in Qingchun Square; FH, fountain at 2nd Affiliated Hospital of Zhejiang University
only one isolate.
Prevalence of qnr and aac(6′)-Ib-cr genes in water-borne environmental and clinical bacteria
| Resource | Strain | No. | Number of positive isolates (%) | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
|
| ||||||||||
| 10 | 0 | 8 (80.0) | 0 | 0 | 0 | 0 | 0 | |||
| 9 | 0 | 0 | 1 (11.1) | 0 | 0 | 1 (11.1) | 1 (11.1) | |||
| 21 | 0 | 0 | 1 (4.8) | 0 | 0 | 2 (9.5) | 0 | |||
| Others | 38 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||
|
| ||||||||||
| Hangzhou | 51 | 3 (5.9) | 38 (74.5) | 0 | 4 (7.8) | 1 (2.0) | 25 (49.0) | 10 (19.6) | ||
| Wenzhou | 14 | 0 | 7 (50.0) | 0 | 0 | 0 | 2 (14.3) | 1 (7.1) | ||
| Shanghai | 7 | 0 | 4 (57.1) | 1 (14.3) | 1 (14.3) | 0 | 1 (14.3) | 1 (14.3) | ||
| Beijing | 31 | 0 | 16 (51.6) | 0 | 0 | 0 | 5 (16.1) | 0 | ||
| Total | 103 | 3 (2.9) | 65 (63.1) | 1 (1.0) | 5 (4.8) | 1 (1.0) | 33 (32.0) | 12 (11.6) | ||
| 7 | 2 (28.6) | 1 (14.3) | 0 | 0 | 0 | 4 (57.1) | 3 (42.9) | |||
| 9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||
| 3 | 0 | 1 (33.3) | 0 | 0 | 0 | 0 | 0 | |||
Fig. 1Distribution of MIC of ciprofloxacin among isolates with qnr or aac(6′)-Ib-cr gene. (A) Clinical isolates. (B) Water-borne environmental isolates.
Summary of Southern hybridization of environmental isolates carrying qnrB or qnrS genes
| Strain | No. | Number of positive isolates | |||
|---|---|---|---|---|---|
|
| |||||
| | 8 | 0 | 3 | ||
| | 1 | 0 | 1 | ||
| | 1 | 0 | 1 | ||
Fig. 2Southern hybridization analysis for determination of the location of gnr gene. (A) Southern hybridization analysis of plasmid or chromosomal DNAs targeting gnrS gene. Lane 1, Positive control for qnrS gene; Lane 2 or 5, plasmid DNAs from environmentally isolated E. coli and A. punctata, respectively; Lane 3 or 4, chromosomal DNAs from environmentally isolated E. coli and A. punctata, respectively. (B) Southern hybridization analysis of plasmid DNAs from eight environmentally isolated C. fruendii targeting gnrB gene. (C) Southern hybridization analysis of chromosomal DNAs from eight environmentally isolated C. fruendii targeting gnrB gene.