Literature DB >> 22785193

Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups.

M Doumith1, M J Day, R Hope, J Wain, N Woodford.   

Abstract

Using data from whole-genome projects, an updated multiplex PCR strategy was developed to assign Escherichia coli isolates rapidly to major phylogenetic groups. This assay accommodates sequence variations detected within target sequences, thereby increasing sensitivity and reliability. It was validated using 185 isolates of known sequence types and showed improved congruence with multilocus sequence typing data.

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Year:  2012        PMID： 22785193      PMCID： PMC3421818          DOI： 10.1128/JCM.01468-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  13 in total

1.  Rapid and simple determination of the Escherichia coli phylogenetic group.

Authors:  O Clermont; S Bonacorsi; E Bingen
Journal:  Appl Environ Microbiol       Date:  2000-10       Impact factor: 4.792

2.  Characterization of plasmids encoding extended-spectrum β-lactamases and their addiction systems circulating among Escherichia coli clinical isolates in the UK.

Authors:  Michel Doumith; Hiran Dhanji; Matthew J Ellington; Peter Hawkey; Neil Woodford
Journal:  J Antimicrob Chemother       Date:  2011-12-29       Impact factor: 5.790

3.  Identification of Escherichia coli from groups A, B1, B2 and D in drinking water in Brazil.

Authors:  Renato H Orsi; Nancy C Stoppe; Maria Inês Z Sato; Laura M M Ottoboni
Journal:  J Water Health       Date:  2007-06       Impact factor: 1.744

4.  Unusual genotype of a Uropathogenic Escherichia coli strain assigned to the B2 phylogenetic group.

Authors:  Nuno Mendonça; Vera Calhau; Tess Lin; Luísa Boaventura; Graça Ribeiro; Gabriela Jorge Da Silva
Journal:  J Clin Microbiol       Date:  2011-06-01       Impact factor: 5.948

5.  Characterization of extended-spectrum beta-lactamases produced by Escherichia coli isolated from hospitalized and nonhospitalized patients: emergence of CTX-M-15-producing strains causing urinary tract infections.

Authors:  Annemieke Smet; An Martel; Davy Persoons; Jeroen Dewulf; Marc Heyndrickx; Geert Claeys; Marc Lontie; Britt Van Meensel; Lieve Herman; Freddy Haesebrouck; Patrick Butaye
Journal:  Microb Drug Resist       Date:  2010-06       Impact factor: 3.431

6.  Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli.

Authors:  P J Herzer; S Inouye; M Inouye; T S Whittam
Journal:  J Bacteriol       Date:  1990-11       Impact factor: 3.490

7.  Non-susceptibility trends among Enterobacteriaceae from bacteraemias in the UK and Ireland, 2001-06.

Authors:  David M Livermore; Russell Hope; Geraldine Brick; Mark Lillie; Rosy Reynolds
Journal:  J Antimicrob Chemother       Date:  2008-11       Impact factor: 5.790

8.  Molecular analysis of antimicrobial-susceptible and -resistant Escherichia coli from retail meats and human stool and clinical specimens in a rural community setting.

Authors:  Elizabeth Lyon Hannah; James R Johnson; Frederick Angulo; Bassam Haddadin; Jacquelyn Williamson; Matthew H Samore
Journal:  Foodborne Pathog Dis       Date:  2009-04       Impact factor: 3.171

9.  Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method.

Authors:  David M Gordon; Olivier Clermont; Heather Tolley; Erick Denamur
Journal:  Environ Microbiol       Date:  2008-06-02       Impact factor: 5.491

10.  Genotyping of Escherichia coli from environmental and animal samples.

Authors:  James Higgins; Christina Hohn; Sally Hornor; Mark Frana; Mary Denver; Rolf Joerger
Journal:  J Microbiol Methods       Date:  2007-04-24       Impact factor: 2.363
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  50 in total

1.  Prevalence of Escherichia coli Carrying pks Islands in Bacteremia Patients.

Authors:  Eunyoung Lee; Yangsoon Lee
Journal:  Ann Lab Med       Date:  2018-05       Impact factor: 3.464

2.  Phylogenetic analysis of Escherichia coli isolated from broilers with colibacillosis based on gyrA gene sequences.

Authors:  Hamid Shamsi; Karim Mardani; Abdolghaffar Ownagh
Journal:  Can J Vet Res       Date:  2017-01       Impact factor: 1.310

3.  High prevalence of blaCTX-M-1/IncI1/ST3 and blaCMY-2/IncI1/ST2 plasmids in healthy urban dogs in France.

Authors:  Marisa Haenni; Estelle Saras; Véronique Métayer; Christine Médaille; Jean-Yves Madec
Journal:  Antimicrob Agents Chemother       Date:  2014-06-30       Impact factor: 5.191

4.  Increase in antimicrobial resistance and emergence of major international high-risk clonal lineages in dogs and cats with urinary tract infection: 16 year retrospective study.

Authors:  Cátia Marques; Adriana Belas; Andreia Franco; Catarina Aboim; Luís Telo Gama; Constança Pomba
Journal:  J Antimicrob Chemother       Date:  2018-02-01       Impact factor: 5.790

5.  Comparison of MALDI-TOF MS and AFLP for strain typing of ESBL-producing Escherichia coli.

Authors:  J Veenemans; M Welker; A van Belkum; M C Saccomani; V Girard; A Pettersson; C Verhulst; M Kluytmans-Vandenbergh; J Kluytmans
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2016-02-27       Impact factor: 3.267

6.  Population structure of Escherichia coli causing bacteraemia in the UK and Ireland between 2001 and 2010.

Authors:  M J Day; M Doumith; J Abernethy; R Hope; R Reynolds; J Wain; D M Livermore; N Woodford
Journal:  J Antimicrob Chemother       Date:  2016-05-05       Impact factor: 5.790

7.  Next-generation sequencing for typing and detection of resistance genes: performance of a new commercial method during an outbreak of extended-spectrum-beta-lactamase-producing Escherichia coli.

Authors:  J Veenemans; I T Overdevest; E Snelders; I Willemsen; Y Hendriks; A Adesokan; G Doran; S Bruso; A Rolfe; A Pettersson; J A J W Kluytmans
Journal:  J Clin Microbiol       Date:  2014-04-30       Impact factor: 5.948

8.  Spread of the blaOXA-48/IncL Plasmid within and between Dogs in City Parks, France.

Authors:  Marisa Haenni; Véronique Métayer; Agnese Lupo; Antoine Drapeau; Jean-Yves Madec
Journal:  Microbiol Spectr       Date:  2022-05-31

9.  Antimicrobial Resistance in Escherichia coli and Enterococcal Isolates From Irrigation Return Flows in a High-Desert Watershed.

Authors:  Robert S Dungan; David L Bjorneberg
Journal:  Front Microbiol       Date:  2021-05-12       Impact factor: 5.640

10.  Nationwide investigation of Shiga toxin-producing Escherichia coli among cattle in Japan revealed the risk factors and potentially virulent subgroups.

Authors:  K Lee; M Kusumoto; T Iwata; S Iyoda; M Akiba
Journal:  Epidemiol Infect       Date:  2017-03-06       Impact factor: 4.434
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