Literature DB >> 22781683

ABSOLUTE cancer genomics.

Peter Van Loo, Peter J Campbell.   

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Year:  2012        PMID： 22781683      PMCID： PMC3428863          DOI： 10.1038/nbt.2293

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  9 in total

1.  The life history of 21 breast cancers.

Authors:  Serena Nik-Zainal; Peter Van Loo; David C Wedge; Ludmil B Alexandrov; Christopher D Greenman; King Wai Lau; Keiran Raine; David Jones; John Marshall; Manasa Ramakrishna; Adam Shlien; Susanna L Cooke; Jonathan Hinton; Andrew Menzies; Lucy A Stebbings; Catherine Leroy; Mingming Jia; Richard Rance; Laura J Mudie; Stephen J Gamble; Philip J Stephens; Stuart McLaren; Patrick S Tarpey; Elli Papaemmanuil; Helen R Davies; Ignacio Varela; David J McBride; Graham R Bignell; Kenric Leung; Adam P Butler; Jon W Teague; Sancha Martin; Goran Jönsson; Odette Mariani; Sandrine Boyault; Penelope Miron; Aquila Fatima; Anita Langerød; Samuel A J R Aparicio; Andrew Tutt; Anieta M Sieuwerts; Åke Borg; Gilles Thomas; Anne Vincent Salomon; Andrea L Richardson; Anne-Lise Børresen-Dale; P Andrew Futreal; Michael R Stratton; Peter J Campbell
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

2.  Allele-specific copy number analysis of tumors.

Authors:  Peter Van Loo; Silje H Nordgard; Ole Christian Lingjærde; Hege G Russnes; Inga H Rye; Wei Sun; Victor J Weigman; Peter Marynen; Anders Zetterberg; Bjørn Naume; Charles M Perou; Anne-Lise Børresen-Dale; Vessela N Kristensen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

3.  Signatures of mutation and selection in the cancer genome.

Authors:  Graham R Bignell; Chris D Greenman; Helen Davies; Adam P Butler; Sarah Edkins; Jenny M Andrews; Gemma Buck; Lina Chen; David Beare; Calli Latimer; Sara Widaa; Jonathon Hinton; Ciara Fahey; Beiyuan Fu; Sajani Swamy; Gillian L Dalgliesh; Bin T Teh; Panos Deloukas; Fengtang Yang; Peter J Campbell; P Andrew Futreal; Michael R Stratton
Journal:  Nature       Date:  2010-02-18       Impact factor: 49.962

4.  Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors.

Authors:  A Kallioniemi; O P Kallioniemi; D Sudar; D Rutovitz; J W Gray; F Waldman; D Pinkel
Journal:  Science       Date:  1992-10-30       Impact factor: 47.728

5.  A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data.

Authors:  Christopher Yau; Dmitri Mouradov; Robert N Jorissen; Stefano Colella; Ghazala Mirza; Graham Steers; Adrian Harris; Jiannis Ragoussis; Oliver Sieber; Christopher C Holmes
Journal:  Genome Biol       Date:  2010-09-21       Impact factor: 13.583

6.  Intratumor heterogeneity and branched evolution revealed by multiregion sequencing.

Authors:  Marco Gerlinger; Andrew J Rowan; Stuart Horswell; James Larkin; David Endesfelder; Eva Gronroos; Pierre Martinez; Nicholas Matthews; Aengus Stewart; Charles Swanton; M Math; Patrick Tarpey; Ignacio Varela; Benjamin Phillimore; Sharmin Begum; Neil Q McDonald; Adam Butler; David Jones; Keiran Raine; Calli Latimer; Claudio R Santos; Mahrokh Nohadani; Aron C Eklund; Bradley Spencer-Dene; Graham Clark; Lisa Pickering; Gordon Stamp; Martin Gore; Zoltan Szallasi; Julian Downward; P Andrew Futreal
Journal:  N Engl J Med       Date:  2012-03-08       Impact factor: 91.245

7.  Absolute quantification of somatic DNA alterations in human cancer.

Authors:  Scott L Carter; Kristian Cibulskis; Elena Helman; Aaron McKenna; Hui Shen; Travis Zack; Peter W Laird; Robert C Onofrio; Wendy Winckler; Barbara A Weir; Rameen Beroukhim; David Pellman; Douglas A Levine; Eric S Lander; Matthew Meyerson; Gad Getz
Journal:  Nat Biotechnol       Date:  2012-05       Impact factor: 54.908

8.  Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.

Authors:  Tatiana Popova; Elodie Manié; Dominique Stoppa-Lyonnet; Guillem Rigaill; Emmanuel Barillot; Marc Henri Stern
Journal:  Genome Biol       Date:  2009-11-11       Impact factor: 13.583

9.  The landscape of somatic copy-number alteration across human cancers.

Authors:  Rameen Beroukhim; Craig H Mermel; Dale Porter; Guo Wei; Soumya Raychaudhuri; Jerry Donovan; Jordi Barretina; Jesse S Boehm; Jennifer Dobson; Mitsuyoshi Urashima; Kevin T Mc Henry; Reid M Pinchback; Azra H Ligon; Yoon-Jae Cho; Leila Haery; Heidi Greulich; Michael Reich; Wendy Winckler; Michael S Lawrence; Barbara A Weir; Kumiko E Tanaka; Derek Y Chiang; Adam J Bass; Alice Loo; Carter Hoffman; John Prensner; Ted Liefeld; Qing Gao; Derek Yecies; Sabina Signoretti; Elizabeth Maher; Frederic J Kaye; Hidefumi Sasaki; Joel E Tepper; Jonathan A Fletcher; Josep Tabernero; José Baselga; Ming-Sound Tsao; Francesca Demichelis; Mark A Rubin; Pasi A Janne; Mark J Daly; Carmelo Nucera; Ross L Levine; Benjamin L Ebert; Stacey Gabriel; Anil K Rustgi; Cristina R Antonescu; Marc Ladanyi; Anthony Letai; Levi A Garraway; Massimo Loda; David G Beer; Lawrence D True; Aikou Okamoto; Scott L Pomeroy; Samuel Singer; Todd R Golub; Eric S Lander; Gad Getz; William R Sellers; Matthew Meyerson
Journal:  Nature       Date:  2010-02-18       Impact factor: 49.962
  9 in total
  9 in total

Review 1.  Evolving Insights into the Molecular Neuropathology of Diffuse Gliomas in Adults.

Authors:  Floris P Barthel; Kevin C Johnson; Pieter Wesseling; Roel G W Verhaak
Journal:  Neurol Clin       Date:  2018-08       Impact factor: 3.806

2.  Ploidy-Seq: inferring mutational chronology by sequencing polyploid tumor subpopulations.

Authors:  Ankit Malhotra; Yong Wang; Jill Waters; Ken Chen; Funda Meric-Bernstam; Ira M Hall; Nicholas E Navin
Journal:  Genome Med       Date:  2015-01-28       Impact factor: 11.117

3.  BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumor.

Authors:  Yi Fu; Guoqiang Yu; Douglas A Levine; Niya Wang; Ie-Ming Shih; Zhen Zhang; Robert Clarke; Yue Wang
Journal:  Sci Rep       Date:  2015-09-09       Impact factor: 4.379

4.  Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.

Authors:  Jiqiu Cheng; Jonas Demeulemeester; David C Wedge; Hans Kristian M Vollan; Jason J Pitt; Hege G Russnes; Bina P Pandey; Gro Nilsen; Silje Nord; Graham R Bignell; Kevin P White; Anne-Lise Børresen-Dale; Peter J Campbell; Vessela N Kristensen; Michael R Stratton; Ole Christian Lingjærde; Yves Moreau; Peter Van Loo
Journal:  Nat Commun       Date:  2017-10-31       Impact factor: 14.919

5.  Comparative analysis of methods for identifying recurrent copy number alterations in cancer.

Authors:  Xiguo Yuan; Junying Zhang; Shengli Zhang; Guoqiang Yu; Yue Wang
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

6.  Leveraging a Multi-Omics Strategy for Prioritizing Personalized Candidate Mutation-Driver Genes: A Proof-of-Concept Study.

Authors:  Keyue Ding; Songfeng Wu; Wantao Ying; Qi Pan; Xiaoyuan Li; Dachun Zhao; Xianyu Li; Qing Zhao; Yunping Zhu; Hong Ren; Xiaohong Qian
Journal:  Sci Rep       Date:  2015-12-03       Impact factor: 4.379

Review 7.  Cancer genomics: one cell at a time.

Authors:  Nicholas E Navin
Journal:  Genome Biol       Date:  2014-08-30       Impact factor: 13.583

Review 8.  Advanced Applications of RNA Sequencing and Challenges.

Authors:  Yixing Han; Shouguo Gao; Kathrin Muegge; Wei Zhang; Bing Zhou
Journal:  Bioinform Biol Insights       Date:  2015-11-15

9.  Automated deconvolution of structured mixtures from heterogeneous tumor genomic data.

Authors:  Theodore Roman; Lu Xie; Russell Schwartz
Journal:  PLoS Comput Biol       Date:  2017-10-23       Impact factor: 4.475
  9 in total

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