SUMMARY: CySBML is a plugin designed to work with Systems Biology Markup Language (SBML) in Cytoscape having the following features: SBML import, support of the SBML layout and qualitative model packages, navigation in network layouts based on SBML structure, access to MIRIAM and SBO-based annotations and SBML validation. CySBML includes an importer for BioModels to load SBML from standard repositories. AVAILABILITY AND IMPLEMENTATION: Freely available for non-commercial purposes through the Cytoscape plugin manager or for download at http://sourceforge.net/projects/cysbml/. CONTACT: cysbml-team@lists.sourceforge.net SUPPLEMENTARY INFORMATION: Tutorial, usage guide, installation instructions and additional figures are available for download at http://www.charite.de/sysbio/people/koenig/software/cysbml/.
SUMMARY: CySBML is a plugin designed to work with Systems Biology Markup Language (SBML) in Cytoscape having the following features: SBML import, support of the SBML layout and qualitative model packages, navigation in network layouts based on SBML structure, access to MIRIAM and SBO-based annotations and SBML validation. CySBML includes an importer for BioModels to load SBML from standard repositories. AVAILABILITY AND IMPLEMENTATION: Freely available for non-commercial purposes through the Cytoscape plugin manager or for download at http://sourceforge.net/projects/cysbml/. CONTACT: cysbml-team@lists.sourceforge.net SUPPLEMENTARY INFORMATION: Tutorial, usage guide, installation instructions and additional figures are available for download at http://www.charite.de/sysbio/people/koenig/software/cysbml/.
Authors: David Hoksza; Piotr Gawron; Marek Ostaszewski; Jan Hasenauer; Reinhard Schneider Journal: Brief Bioinform Date: 2020-07-15 Impact factor: 11.622
Authors: Michael Römer; Johannes Eichner; Andreas Dräger; Clemens Wrzodek; Finja Wrzodek; Andreas Zell Journal: PLoS One Date: 2016-02-16 Impact factor: 3.240