Literature DB >> 22766843

Observing and modeling BMCC degradation by commercial cellulase cocktails with fluorescently labeled Trichoderma reseii Cel7A through confocal microscopy.

Jeremy S Luterbacher1, Larry P Walker, Jose M Moran-Mirabal.   

Abstract

Understanding the depolymerization mechanisms of cellulosic substrates by cellulase cocktails is a critical step towards optimizing the production of monosaccharides from biomass. The Spezyme CP cellulase cocktail combined with the Novo 188 β-glucosidase blend was used to depolymerize bacterial microcrystalline cellulose (BMCC), which was immobilized on a glass surface. The enzyme mixture was supplemented with a small fraction of fluorescently labeled Trichoderma reseii Cel7A, which served as a reporter to track cellulase binding onto the physical structure of the cellulosic substrate. Both micro-scale imaging and bulk experiments were conducted. All reported experiments were conducted at 50 °C, the optimal temperature for maximum hydrolytic activity of the enzyme cocktail. BMCC structure was observed throughout degradation by labeling it with a fluorescent dye. This method allowed us to measure the binding of cellulases in situ and follow the temporal morphological changes of cellulose during its depolymerization by a commercial cellulase mixture. Three kinetic models were developed and fitted to fluorescence intensity data obtained through confocal microscopy: irreversible and reversible binding models, and an instantaneous binding model. The models were successfully used to predict the soluble sugar concentrations that were liberated from BMCC in bulk experiments. Comparing binding and kinetic parameters from models with different assumptions to previously reported constants in the literature led us to conclude that exposing new binding sites is an important rate-limiting step in the hydrolysis of crystalline cellulose.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 22766843     DOI: 10.1002/bit.24597

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  10 in total

1.  Slow Off-rates and Strong Product Binding Are Required for Processivity and Efficient Degradation of Recalcitrant Chitin by Family 18 Chitinases.

Authors:  Mihhail Kurašin; Silja Kuusk; Piret Kuusk; Morten Sørlie; Priit Väljamäe
Journal:  J Biol Chem       Date:  2015-10-14       Impact factor: 5.157

2.  Inter-domain Synergism Is Required for Efficient Feeding of Cellulose Chain into Active Site of Cellobiohydrolase Cel7A.

Authors:  Riin Kont; Jeppe Kari; Kim Borch; Peter Westh; Priit Väljamäe
Journal:  J Biol Chem       Date:  2016-10-25       Impact factor: 5.157

3.  Fluorescent Imaging of Extracellular Fungal Enzymes Bound onto Plant Cell Walls.

Authors:  Neus Gacias-Amengual; Lena Wohlschlager; Florian Csarman; Roland Ludwig
Journal:  Int J Mol Sci       Date:  2022-05-06       Impact factor: 6.208

4.  The dissociation mechanism of processive cellulases.

Authors:  Josh V Vermaas; Riin Kont; Gregg T Beckham; Michael F Crowley; Mikael Gudmundsson; Mats Sandgren; Jerry Ståhlberg; Priit Väljamäe; Brandon C Knott
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-30       Impact factor: 11.205

5.  Exploring accessibility of pretreated poplar cell walls by measuring dynamics of fluorescent probes.

Authors:  Gabriel Paës; Anouck Habrant; Jordane Ossemond; Brigitte Chabbert
Journal:  Biotechnol Biofuels       Date:  2017-01-14       Impact factor: 6.040

6.  Visualising recalcitrance by colocalisation of cellulase, lignin and cellulose in pretreated pine biomass using fluorescence microscopy.

Authors:  Lloyd Donaldson; Alankar Vaidya
Journal:  Sci Rep       Date:  2017-03-10       Impact factor: 4.379

7.  Visualizing cellulase adsorption and quantitatively determining cellulose accessibility with an updated fungal cellulose-binding module-based fluorescent probe protein.

Authors:  Tian Li; Nan Liu; Xianjin Ou; Xuebing Zhao; Feng Qi; Jianzhong Huang; Dehua Liu
Journal:  Biotechnol Biofuels       Date:  2018-04-09       Impact factor: 6.040

8.  Synchrotron Time-Lapse Imaging of Lignocellulosic Biomass Hydrolysis: Tracking Enzyme Localization by Protein Autofluorescence and Biochemical Modification of Cell Walls by Microfluidic Infrared Microspectroscopy.

Authors:  Marie-Françoise Devaux; Frédéric Jamme; William André; Brigitte Bouchet; Camille Alvarado; Sylvie Durand; Paul Robert; Luc Saulnier; Estelle Bonnin; Fabienne Guillon
Journal:  Front Plant Sci       Date:  2018-02-20       Impact factor: 5.753

9.  Single-molecule imaging analysis reveals the mechanism of a high-catalytic-activity mutant of chitinase A from Serratia marcescens.

Authors:  Akasit Visootsat; Akihiko Nakamura; Paul Vignon; Hiroki Watanabe; Takayuki Uchihashi; Ryota Iino
Journal:  J Biol Chem       Date:  2020-01-10       Impact factor: 5.157

Review 10.  Report on the Current Inventory of the Toolbox for Plant Cell Wall Analysis: Proteinaceous and Small Molecular Probes.

Authors:  Maja G Rydahl; Aleksander R Hansen; Stjepan K Kračun; Jozef Mravec
Journal:  Front Plant Sci       Date:  2018-05-03       Impact factor: 5.753

  10 in total

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