Literature DB >> 22766634

Enhanced interpretation of newborn screening results without analyte cutoff values.

Gregg Marquardt1, Robert Currier, David M S McHugh, Dimitar Gavrilov, Mark J Magera, Dietrich Matern, Devin Oglesbee, Kimiyo Raymond, Piero Rinaldo, Emily H Smith, Silvia Tortorelli, Coleman T Turgeon, Fred Lorey, Bridget Wilcken, Veronica Wiley, Lawrence C Greed, Barry Lewis, François Boemer, Roland Schoos, Sandrine Marie, Marie-Françoise Vincent, Yuri Cleverthon Sica, Mouseline Torquado Domingos, Khalid Al-Thihli, Graham Sinclair, Osama Y Al-Dirbashi, Pranesh Chakraborty, Mark Dymerski, Cory Porter, Adrienne Manning, Margretta R Seashore, Jonessy Quesada, Alejandra Reuben, Petr Chrastina, Petr Hornik, Iman Atef Mandour, Sahar Abdel Atty Sharaf, Olaf Bodamer, Bonifacio Dy, Jasmin Torres, Roberto Zori, David Cheillan, Christine Vianey-Saban, David Ludvigson, Adrya Stembridge, Jim Bonham, Melanie Downing, Yannis Dotsikas, Yannis L Loukas, Vagelis Papakonstantinou, Georgios S A Zacharioudakis, Ákos Baráth, Eszter Karg, Leifur Franzson, Jon J Jonsson, Nancy N Breen, Barbara G Lesko, Stanton L Berberich, Kimberley Turner, Margherita Ruoppolo, Emanuela Scolamiero, Italo Antonozzi, Claudia Carducci, Ubaldo Caruso, Michela Cassanello, Giancarlo la Marca, Elisabetta Pasquini, Iole Maria Di Gangi, Giuseppe Giordano, Marta Camilot, Francesca Teofoli, Shawn M Manos, Colleen K Peterson, Stephanie K Mayfield Gibson, Darrin W Sevier, Soo-Youn Lee, Hyung-Doo Park, Issam Khneisser, Phaidra Browning, Fizza Gulamali-Majid, Michael S Watson, Roger B Eaton, Inderneel Sahai, Consuelo Ruiz, Rosario Torres, Mary A Seeterlin, Eleanor L Stanley, Amy Hietala, Mark McCann, Carlene Campbell, Patrick V Hopkins, Monique G de Sain-Van der Velden, Bert Elvers, Mark A Morrissey, Sherlykutty Sunny, Detlef Knoll, Dianne Webster, Dianne M Frazier, Julie D McClure, David E Sesser, Sharon A Willis, Hugo Rocha, Laura Vilarinho, Catharine John, James Lim, S Graham Caldwell, Kathy Tomashitis, Daisy E Castiñeiras Ramos, Jose Angel Cocho de Juan, Inmaculada Rueda Fernández, Raquel Yahyaoui Macías, José María Egea-Mellado, Inmaculada González-Gallego, Carmen Delgado Pecellin, Maria Sierra García-Valdecasas Bermejo, Yin-Hsiu Chien, Wuh-Liang Hwu, Thomas Childs, Christine D McKeever, Tijen Tanyalcin, Mahera Abdulrahman, Cecilia Queijo, Aída Lemes, Tim Davis, William Hoffman, Mei Baker, Gary L Hoffman.   

Abstract

PURPOSE: To improve quality of newborn screening by tandem mass spectrometry with a novel approach made possible by the collaboration of 154 laboratories in 49 countries.
METHODS: A database of 767,464 results from 12,721 cases affected with 60 conditions was used to build multivariate pattern recognition software that generates tools integrating multiple clinically significant results into a single score. This score is determined by the overlap between normal and disease ranges, penetration within the disease range, differences between conditions, and weighted correction factors.
RESULTS: Ninety tools target either a single condition or the differential diagnosis between multiple conditions. Scores are expressed as the percentile rank among all cases with the same condition and are compared to interpretation guidelines. Retrospective evaluation of past cases suggests that these tools could have avoided at least half of 279 false-positive outcomes caused by carrier status for fatty-acid oxidation disorders and could have prevented 88% of known false-negative events.
CONCLUSION: Application of this computational approach to raw data is independent from single analyte cutoff values. In Minnesota, the tools have been a major contributing factor to the sustained achievement of a false-positive rate below 0.1% and a positive predictive value above 60%.

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Mesh:

Year:  2012        PMID: 22766634     DOI: 10.1038/gim.2012.2

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  31 in total

1.  High-throughput immunoassay for the biochemical diagnosis of Friedreich ataxia in dried blood spots and whole blood.

Authors:  Devin Oglesbee; Charles Kroll; Oleksandr Gakh; Eric C Deutsch; David R Lynch; Ralitza Gavrilova; Silvia Tortorelli; Kimiyo Raymond; Dimitar Gavrilov; Piero Rinaldo; Dietrich Matern; Grazia Isaya
Journal:  Clin Chem       Date:  2013-07-09       Impact factor: 8.327

Review 2.  Newborn screening for Krabbe's disease.

Authors:  Joseph J Orsini; Carlos A Saavedra-Matiz; Michael H Gelb; Michele Caggana
Journal:  J Neurosci Res       Date:  2016-11       Impact factor: 4.164

3.  Multiplex Tandem Mass Spectrometry Enzymatic Activity Assay for Newborn Screening of the Mucopolysaccharidoses and Type 2 Neuronal Ceroid Lipofuscinosis.

Authors:  Yang Liu; Fan Yi; Arun Babu Kumar; Naveen Kumar Chennamaneni; Xinying Hong; C Ronald Scott; Michael H Gelb; Frantisek Turecek
Journal:  Clin Chem       Date:  2017-04-20       Impact factor: 8.327

4.  Performance of serum and dried blood spot acylcarnitine profiles for detection of fatty acid β-oxidation disorders in adult patients with rhabdomyolysis.

Authors:  Khalid Al-Thihli; Graham Sinclair; Sandra Sirrs; Michelle Mezei; Judie Nelson; Hilary Vallance
Journal:  J Inherit Metab Dis       Date:  2013-01-08       Impact factor: 4.982

5.  Beta-Ketothiolase Deficiency Presenting with Metabolic Stroke After a Normal Newborn Screen in Two Individuals.

Authors:  Monica H Wojcik; Klaas J Wierenga; Lance H Rodan; Inderneel Sahai; Sacha Ferdinandusse; Casie A Genetti; Meghan C Towne; Roy W A Peake; Philip M James; Alan H Beggs; Catherine A Brownstein; Gerard T Berry; Pankaj B Agrawal
Journal:  JIMD Rep       Date:  2017-07-20

6.  Performance of Expanded Newborn Screening in Norway Supported by Post-Analytical Bioinformatics Tools and Rapid Second-Tier DNA Analyses.

Authors:  Trine Tangeraas; Ingjerd Sæves; Claus Klingenberg; Jens Jørgensen; Erle Kristensen; Gunnþórunn Gunnarsdottir; Eirik Vangsøy Hansen; Janne Strand; Emma Lundman; Sacha Ferdinandusse; Cathrin Lytomt Salvador; Berit Woldseth; Yngve T Bliksrud; Carlos Sagredo; Øyvind E Olsen; Mona C Berge; Anette Kjoshagen Trømborg; Anders Ziegler; Jin Hui Zhang; Linda Karlsen Sørgjerd; Mari Ytre-Arne; Silje Hogner; Siv M Løvoll; Mette R Kløvstad Olavsen; Dionne Navarrete; Hege J Gaup; Rina Lilje; Rolf H Zetterström; Asbjørg Stray-Pedersen; Terje Rootwelt; Piero Rinaldo; Alexander D Rowe; Rolf D Pettersen
Journal:  Int J Neonatal Screen       Date:  2020-06-27

7.  Fatty Acid oxidation disorders in a chinese population in taiwan.

Authors:  Yin-Hsiu Chien; Ni-Chung Lee; Mei-Chyn Chao; Li-Chu Chen; Li-Hsin Chen; Chun-Ching Chien; Hui-Chen Ho; Jeng-Hung Suen; Wuh-Liang Hwu
Journal:  JIMD Rep       Date:  2013-05-23

8.  Systematic Data Collection to Inform Policy Decisions: Integration of the Region 4 Stork (R4S) Collaborative Newborn Screening Database to Improve MS/MS Newborn Screening in Washington State.

Authors:  Ashleigh Fleischman; John D Thompson; Mike Glass
Journal:  JIMD Rep       Date:  2013-11-05

9.  Outcomes and genotype-phenotype correlations in 52 individuals with VLCAD deficiency diagnosed by NBS and enrolled in the IBEM-IS database.

Authors:  Loren D M Pena; Sandra C van Calcar; Joyanna Hansen; Mathew J Edick; Cate Walsh Vockley; Nancy Leslie; Cynthia Cameron; Al-Walid Mohsen; Susan A Berry; Georgianne L Arnold; Jerry Vockley
Journal:  Mol Genet Metab       Date:  2016-05-13       Impact factor: 4.797

10.  Missed Newborn Screening Case of Carnitine Palmitoyltransferase-II Deficiency.

Authors:  Andrew C Edmondson; Jennifer Salant; Lynne A Ierardi-Curto; Can Ficicioglu
Journal:  JIMD Rep       Date:  2016-04-12
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