Literature DB >> 22752873

Minor fibrillar collagens, variable regions alternative splicing, intrinsic disorder, and tyrosine sulfation.

Ming Fang1, Reed Jacob, Owen McDougal, Julia Thom Oxford.   

Abstract

Minor fibrillar collagen types V and XI, are those less abundant than the fibrillar collagen types I, II and III. The alpha chains share a high degree of similarity with respect to protein sequence in all domains except the variable region. Genomic variation and, in some cases, extensive alternative splicing contribute to the unique sequence characteristics of the variable region. While unique expression patterns in tissues exist, the functions and biological relevance of the variable regions have not been elucidated. In this review, we summarize the existing knowledge about expression patterns and biological functions of the collagen types V and XI alpha chains. Analysis of biochemical similarities among the peptides encoded by each exon of the variable region suggests the potential for a shared function. The alternative splicing, conservation of biochemical characteristics in light of low sequence conservation, and evidence for intrinsic disorder, suggest modulation of binding events between the surface of collagen fibrils and surrounding extracellular molecules as a shared function.

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Year:  2012        PMID: 22752873      PMCID: PMC3484837          DOI: 10.1007/s13238-012-2917-5

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  103 in total

1.  Alternative splicing of type II procollagen exon 2 is regulated by the combination of a weak 5' splice site and an adjacent intronic stem-loop cis element.

Authors:  Audrey McAlinden; Necat Havlioglu; Li Liang; Sherri R Davies; Linda J Sandell
Journal:  J Biol Chem       Date:  2005-08-02       Impact factor: 5.157

Review 2.  Carbohydrate sulfotransferases: mediators of extracellular communication.

Authors:  K G Bowman; C R Bertozzi
Journal:  Chem Biol       Date:  1999-01

3.  Stickler syndrome without eye involvement is caused by mutations in COL11A2, the gene encoding the alpha2(XI) chain of type XI collagen.

Authors:  D A Sirko-Osadsa; M A Murray; J A Scott; M A Lavery; M L Warman; N H Robin
Journal:  J Pediatr       Date:  1998-02       Impact factor: 4.406

4.  A transcription activator with restricted tissue distribution regulates cell-specific expression of alpha1(XI) collagen.

Authors:  A Kinoshita; P Greenwel; S Tanaka; M Di Liberto; H Yoshioka; F Ramirez
Journal:  J Biol Chem       Date:  1997-12-12       Impact factor: 5.157

5.  Mutations in COL11A2 cause non-syndromic hearing loss (DFNA13).

Authors:  W T McGuirt; S D Prasad; A J Griffith; H P Kunst; G E Green; K B Shpargel; C Runge; C Huybrechts; R F Mueller; E Lynch; M C King; H G Brunner; C W Cremers; M Takanosu; S W Li; M Arita; R Mayne; D J Prockop; G Van Camp; R J Smith
Journal:  Nat Genet       Date:  1999-12       Impact factor: 38.330

6.  Cis-acting elements regulate alternative splicing of exons 6A, 6B and 8 of the alpha1(XI) collagen gene and contribute to the regional diversification of collagen XI matrices.

Authors:  Y Chen; H Sumiyoshi; J T Oxford; H Yoshioka; F Ramirez; N P Morris
Journal:  Matrix Biol       Date:  2001-12       Impact factor: 11.583

7.  Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms.

Authors:  Pedro R Romero; Saima Zaidi; Ya Yin Fang; Vladimir N Uversky; Predrag Radivojac; Christopher J Oldfield; Marc S Cortese; Megan Sickmeier; Tanguy LeGall; Zoran Obradovic; A Keith Dunker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-22       Impact factor: 11.205

8.  Cooperativity between far upstream enhancer and proximal promoter elements of the human {alpha}2(I) collagen (COL1A2) gene instructs tissue specificity in transgenic mice.

Authors:  Shizuko Tanaka; Taras T Antoniv; Ke Liu; Lu Wang; Dominic J Wells; Francesco Ramirez; George Bou-Gharios
Journal:  J Biol Chem       Date:  2004-10-29       Impact factor: 5.157

9.  Tyrosine sulfation of CCR5 N-terminal peptide by tyrosylprotein sulfotransferases 1 and 2 follows a discrete pattern and temporal sequence.

Authors:  Christoph Seibert; Martine Cadene; Anthony Sanfiz; Brian T Chait; Thomas P Sakmar
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-08       Impact factor: 11.205

10.  Differential expression of an acidic domain in the amino-terminal propeptide of mouse pro-alpha 2(XI) collagen by complex alternative splicing.

Authors:  N Tsumaki; T Kimura
Journal:  J Biol Chem       Date:  1995-02-03       Impact factor: 5.157

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  8 in total

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Journal:  In Vitro Cell Dev Biol Anim       Date:  2015-10-20       Impact factor: 2.416

Review 2.  Role of tyrosine-sulfated proteins in retinal structure and function.

Authors:  Y Kanan; M R Al-Ubaidi
Journal:  Exp Eye Res       Date:  2015-04       Impact factor: 3.467

3.  Collagen- and hyaluronic acid-based hydrogels and their biomedical applications.

Authors:  Qinghua Xu; Jessica E Torres; Mazin Hakim; Paulina M Babiak; Pallabi Pal; Carly M Battistoni; Michael Nguyen; Alyssa Panitch; Luis Solorio; Julie C Liu
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4.  Nuclear factor Y (NF-Y) regulates the proximal promoter activity of the mouse collagen α1(XI) gene (Col11a1) in chondrocytes.

Authors:  Mariko Hida; Ryoji Hamanaka; Osamu Okamoto; Kouhei Yamashita; Takako Sasaki; Hidekatsu Yoshioka; Noritaka Matsuo
Journal:  In Vitro Cell Dev Biol Anim       Date:  2013-10-03       Impact factor: 2.416

5.  Rheumatoid arthritis in a patient with compound heterozygous variants in the COL11A2 gene and progressive hearing loss: A case report.

Authors:  Yumi Tsuchida; Yasuo Nagafuchi; Tomoko Uehara; Hisato Suzuki; Mamiko Yamada; Masanori Kono; Hiroaki Hatano; Hirofumi Shoda; Keishi Fujio; Kenjiro Kosaki
Journal:  Medicine (Baltimore)       Date:  2022-02-18       Impact factor: 1.817

Review 6.  Endoplasmic Reticulum Stress and Unfolded Protein Response in Cartilage Pathophysiology; Contributing Factors to Apoptosis and Osteoarthritis.

Authors:  Alexandria Hughes; Alexandra E Oxford; Ken Tawara; Cheryl L Jorcyk; Julia Thom Oxford
Journal:  Int J Mol Sci       Date:  2017-03-20       Impact factor: 5.923

7.  A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.

Authors:  Akira Wiberg; Michael Ng; Annina B Schmid; Robert W Smillie; Georgios Baskozos; Michael V Holmes; K Künnapuu; R Mägi; David L Bennett; Dominic Furniss
Journal:  Nat Commun       Date:  2019-03-04       Impact factor: 14.919

8.  Col11a1a Expression Is Required for Zebrafish Development.

Authors:  Makenna J Hardy; Jonathon C Reeck; Ming Fang; Jason S Adams; Julia Thom Oxford
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  8 in total

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