Literature DB >> 22752579

Molecular crowding and hydration regulating of G-quadruplex formation.

Daisuke Miyoshi1, Takeshi Fujimoto, Naoki Sugimoto.   

Abstract

Intracellular space is highly crowded with soluble and insoluble biomolecules that range from large polymers, such as proteins and nucleic acids, to small molecules, including metabolites and metal ions. It is therefore of interest to understand the effects of molecular crowding on the structure, stability, and function of biomolecules. Moreover, molecular crowding is observed not only intracellularly but also in the extracellular matrix and under the conditions used in in vitro biotechnological and nanotechnological processes. However, most biochemical studies of biomolecules are performed under dilute conditions. Recent studies have demonstrated critical effects of molecular crowding on nucleic acids. In the present study we discuss how molecular crowding affects the properties of G-quadruplexes as well as other non-canonical nucleic acid structures.

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Year:  2013        PMID: 22752579     DOI: 10.1007/128_2012_335

Source DB:  PubMed          Journal:  Top Curr Chem        ISSN: 0340-1022


  12 in total

1.  Two cationic porphyrin isomers showing different multimeric G-quadruplex recognition specificity against monomeric G-quadruplexes.

Authors:  Xiao-Xi Huang; Li-Na Zhu; Bin Wu; Yan-Fang Huo; Na-Na Duan; De-Ming Kong
Journal:  Nucleic Acids Res       Date:  2014-06-17       Impact factor: 16.971

2.  A Dual-App Nucleoside Probe Provides Structural Insights into the Human Telomeric Overhang in Live Cells.

Authors:  Sudeshna Manna; Debayan Sarkar; Seergazhi G Srivatsan
Journal:  J Am Chem Soc       Date:  2018-09-21       Impact factor: 15.419

3.  Specific recognition and stabilization of monomeric and multimeric G-quadruplexes by cationic porphyrin TMPipEOPP under molecular crowding conditions.

Authors:  Li-Na Zhu; Bin Wu; De-Ming Kong
Journal:  Nucleic Acids Res       Date:  2013-02-20       Impact factor: 16.971

4.  Polyethylene glycol binding alters human telomere G-quadruplex structure by conformational selection.

Authors:  Robert Buscaglia; M Clarke Miller; William L Dean; Robert D Gray; Andrew N Lane; John O Trent; Jonathan B Chaires
Journal:  Nucleic Acids Res       Date:  2013-06-26       Impact factor: 16.971

Review 5.  Radio Signals from Live Cells: The Coming of Age of In-Cell Solution NMR.

Authors:  Enrico Luchinat; Matteo Cremonini; Lucia Banci
Journal:  Chem Rev       Date:  2022-01-21       Impact factor: 72.087

6.  X-ray characterization of mesophases of human telomeric G-quadruplexes and other DNA analogues.

Authors:  Selcuk Yasar; Jacob B Schimelman; M Alphan Aksoyoglu; Nicole F Steinmetz; Roger H French; V Adrian Parsegian; Rudolf Podgornik
Journal:  Sci Rep       Date:  2016-06-02       Impact factor: 4.379

7.  Telomeric G-Quadruplexes: From Human to Tetrahymena Repeats.

Authors:  Erika Demkovičová; Ľuboš Bauer; Petra Krafčíková; Katarína Tlučková; Petra Tóthova; Andrea Halaganová; Eva Valušová; Viktor Víglaský
Journal:  J Nucleic Acids       Date:  2017-12-28

8.  Fluorescence-based tools to probe G-quadruplexes in cell-free and cellular environments.

Authors:  Sudeshna Manna; Seergazhi G Srivatsan
Journal:  RSC Adv       Date:  2018-07-17       Impact factor: 4.036

9.  Probing G-quadruplex topologies and recognition concurrently in real time and 3D using a dual-app nucleoside probe.

Authors:  Ashok Nuthanakanti; Ishtiyaq Ahmed; Saddam Y Khatik; Kayarat Saikrishnan; Seergazhi G Srivatsan
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

10.  Probing Human Telomeric DNA and RNA Topology and Ligand Binding in a Cellular Model by Using Responsive Fluorescent Nucleoside Probes.

Authors:  Sudeshna Manna; Cornelia H Panse; Vyankat A Sontakke; Sarangamath Sangamesh; Seergazhi G Srivatsan
Journal:  Chembiochem       Date:  2017-07-10       Impact factor: 3.164

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