| Literature DB >> 22751260 |
Takashi Yumura1, Tatsuya Awano, Hisayoshi Kobayashi, Tokio Yamabe.
Abstract
Density functional theory calculations found that spin density distributions ofEntities:
Mesh:
Substances:
Year: 2012 PMID: 22751260 PMCID: PMC6268068 DOI: 10.3390/molecules17077941
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Optimized structure for C96H26graphene patch.
Figure 2Optimized structures for bare Pt6 cluster, and their spin density distributions. Isosurface α- and β-spins are given by pink and blue, respectively.
Figure 3Spin density distributions of optimized C96H26 and Pt6-C96H26 configurations in the triplet state. Parts of the optimized geometries, corresponding to the region surrounded by pink hashed lines in Figure 1, are given. Isosurface α- and β-spins are given by pink and blue, respectively. Optimized bond lengths are in Å.
Energy difference between the singlet and triplet states in Pt6-C96H26 (ΔEstate in kcal/mol) a.
| Pt6(i) | Pt6(ii)-(1) | Pt6(ii)-(2) | |
|---|---|---|---|
|
| –14.5 | –5.4 | –5.4 |
|
| –31.4 | –23.6 | –22.1 |
a ΔEstate(Pt6-C96H26) = Etotal(triplet state) – Etotal(singlet state). Negative ΔEstate values indicate that the triplet state of a Pt6-C96H26 configuration is energetically stable relative to the singlet state.
Figure 4Vacancy type defects (C96–H26), constructed by removing a few carbon atoms from C96H26 where n ranges from 1 to 3. Parts of the optimized geometries, corresponding to the region surrounded by pink hashed lines in Figure 1, are given. Optimized bond lengths are given in Å. Their spin density distributions in the triplet state are also given. Isosurface α- and β-spins are given by pink and blue, respectively.
Energy difference between the singlet and triplet states in C96-H26 (ΔEstate in kcal/mol) a.
|
| ||||
| 0 | 1 | 2 | 3 | |
|
| -12.8 | –14.0 | –14.8 | –31.4 |
a ΔEstate(C96–H26) = Etotal(triplet state) – Etotal(singlet state). Negative ΔEstate values indicate that the triplet state of a C96–H26 configuration is energetically stable relative to the singlet state.
Figure 5Optimized geometries for Pt6 cluster on the mono-vacancy-type defect in the singlet state (Pt6-C95H26). Optimized bond lengths are given in Table 3.
Figure 7Optimized geometries for Pt6 cluster on the tri-vacancy-type defect in the triplet state (Pt6-C93H26). Optimized bond lengths are given in Table 5.
Key parameters of Pt on mono-vacancy defect (C95H26) (k is 1 or 6) in Figure 5. Separations of a Pt atom from orange atoms (Pt-C(orange)) and those from the red atom (Pt-C(red)). Separations of carbon atoms from a Pt atom except for the nearest Pt atom (other Pt-C), and those between the two orange atoms (C-C). Bond lengths are in Å. The Ebind and ΔE(Pt) values are given in kcal/mol. Their definition was given in the text.
|
| Pt-C(orange) | Pt-C(red) | other Pt-C | C-C Bond | Δ | |
|---|---|---|---|---|---|---|
|
| –145.7 | 1.953, 1.954 | 1.942 | –– | 2.764 | –– |
|
| –152.0 | 1.986, 1.988 | 1.968 | –– | 2.745 | 4.2 |
|
| –146.6 | 1.947, 1.968 | 1.958 | 2.215 | 2.768 | 16.8 |
|
| –151.6 | 1.980, 1.981 | 1.991 | 2.074 | 2.728 | 17.4 |
|
| –157.1 | 1.983, 1.983 | 2.010 | 2.114 | 2.729 | 8.1 |
|
| –136.7 | 1.978, 1.976 | 1.991 | 2.200, 2.083, 2.252 | 2.803 | 15.3 |
|
| –143.4 | 1.986, 1.977 | 1.982 | 2.113 | 2.740 | 6.3 |
Key parameters of Pt on tri-vacancy defect (C93H26) (k = 2 ~ 5) in Figure 10. Separations of a Pt atom from orange atoms (Pt-C(orange)) and those from the red atom (Pt-C(red)). Separations of carbon atoms from a Pt atom except for the nearest Pt atom (other Pt-C), and those between the two orange atoms (C-C). Bond lengths are in Å. The Ebind and ΔE(Pt) values are given in kcal/mol. Their definition was given in the text.
|
| Pt-C(orange) | Pt-C(red) | other Pt-C | C--C Bond | Δ | |
|---|---|---|---|---|---|---|
|
| –172.3 | 1.944, 1.968, 1.988, 1.950 | 2.038 | –– | 2.839, 2.852 | 22.0 |
|
| –132.0 | 2.002, 1.985 | 2.009 | 2.021 | 2.874, 1.630 | 8.3 |
|
| –167.5 | 1.948, 1.964, 1.989, 2.124 | 2.021 | 2.067 | 2.999, 2.832 | 9.8 |
|
| –180.3 | 1.978, 2.068, 1.973, 1.981 | 2.046 | 2.050 | 2.897, 2.704 | 3.6 |
|
| –173.0 | 1.950, 1.976, 1.934, 1.997 | 2.099 | –– | 2.840, 2.750 | 13.9 |
Key parameters of Pt on di-vacancy defect (C94H26) (k is 1 or 6) in Figure 6. Separations of a Pt atom from orange atoms (Pt-C(orange)), those of carbon atoms from a Pt atom except for the nearest Pt atom (other Pt-C), and those between the two orange atoms (C-C). Bond lengths are in Å. The Ebind and ΔE(Pt) values are given in kcal/mol.
|
| Pt-C(orange) | other Pt-C | C-C Bond | ||
|---|---|---|---|---|---|
|
| –106.1 | 1.999, 1.985, 1.999, 1.985 | –– | 2.846, 2.846 | –– |
|
| –106.7 | 2.010, 2.001, 2.091, 2.117 | 2.088,2.033 | 2.810, 2.940 | 12.7 |
|
| –106.3 | 2.014, 2.101, 2.109, 2.008 | 2.087,2.108 | 2.918, 2.921 | 14.8 |
|
| –94.5 | 2.014, 2.119, 2.088, 2.005 | 2.206,2.314, 2.084, 2.119 | 2.928, 2.921 | 17.3 |
|
| –85.1 | 1.994, 2.021, 2.036, 2.114 | 2.040 | 2.836, 2.941 | 17.9 |
Figure 6Optimized geometries for Pt6 cluster on the di-vacancy-type defect in the singlet state (Pt6-C94H26). Optimized bond lengths are given in Table 4.
Key parameters of Pt on tri-vacancy defect (C93H26) (k is 1 or 6) in Figure 7. Separations of a Pt atom from orange atoms (Pt-C(orange)) and those from the red atom (Pt-C(red)). Separations of carbon atoms from a Pt atom except for the nearest Pt atom (other Pt-C), and those between the two orange atoms (C-C). Bond lengths are in Å. The Ebind and ΔE(Pt) values are given in kcal/mol.
|
| Pt-C(orange) | Pt-C(red) | other Pt-C | C-C Bond | ||
|---|---|---|---|---|---|---|
|
| –162.6 | 2.114, 2.333, 2.097, 2.641 | 2.059 | –– | 2.637, 2.641 | –– |
|
| –198.2 | 1.992, 1.959, 1.971, 1.969 | 2.105 | 2.054 | 2.753, 2.830 | 12.2 |
|
| –193.4 | 2.006, 1.988, 1.974, 1.938 | 2.144 | 2.130 | 2.825, 2.746 | 5.9 |
|
| –188.4 | 1.971, 2.081, 1.970, 1.969 | 2.046 | 2.378, 2.217, 2.107 | 2.924, 2.922 | 20.0 |
|
| –142.0 | 2.006, 2.015 | 2.021 | 2.130, 2.231 | 2.710 | 17.9 |
Figure 8Optimized geometries for Pt cluster (k = 2~5) on the mono-vacancy-type defect in the singlet state (Pt-C95H26). Optimized bond lengths are given in Table 6.
Figure 10Optimized geometries for Pt cluster (k = 2~5) on the tri-vacancy-type defect in the singlet state (Pt-C93H26). Optimized bond lengths are given in Table 8.
Key parameters of Pt on mono-vacancy defect (C95H26) (k = 2 ~ 5) in Figure 8.
|
| Pt-C(orange) | Pt-C(red) | other Pt-C | C-C Bond | Δ | |
|---|---|---|---|---|---|---|
|
| –131.7 | 1.964, 2.006 | 1.969 | –– | 2.755 | 29.6 |
|
| –146.1 | 1.965, 1.965 | 1.942 | –– | 2.743 | 9.0 |
|
| –132.4 | 1.971, 1.972 | 1.971 | –– | 2.715 | 0.9 |
|
| –126.9 | 1.952, 1.976 | 1.962 | –– | 2.790 | 2.5 |
|
| –139.7 | 1.983, 1.984 | 1.967 | –– | 2.759 | 7.4 |
|
| –140.0 | 1.981, 1.987 | 1.987 | 2.054 | 2.743 | 7.4 |
|
| –128.3 | 1.953, 1.966 | 1.960 | 2.227 | 2.757 | 19.8 |
|
| –140.5 | 1.976, 1.976 | 1.980 | –– | 2.753 | 4.3 |
|
| –147.8 | 1.982, 1.982 | 2.002 | 2.105 | 2.741 | 5.4 |
|
| –132.4 | 1.947, 1.966 | 1.972 | 2.211, 2.275 | 2.790 | 4.6 |
Key parameters of Pt on di-vacancy defect (C94H26) (k = 2 ~ 5) in Figure 9.
|
| Pt-C(orange) | other Pt-C | C-C Bond | Δ | |
|---|---|---|---|---|---|
|
| –91.2 | 1.999, 2.028, 2.038, 2.066 | –– | 2.831, 2.904 | 10.6 |
|
| –59.2 | 1.934, 1.935, 1.997, 1.997 | –– | 2.786, 2.740 | 7.1 |
|
| –70.9 | 2.025, 2.118, 2.025, 2.119 | 2.045, 2.046 | 2.893, 2.893 | 9.6 |
|
| –63.2 | 1.990, 2.013, 2.125, 2.199 | 2.081, 2.082 | 2.791, 2.976 | 7.0 |
|
| –57.6 | 1.972, 1.987, 1.971, 1.986 | –– | 2.690, 2.690 | 1.1 |
|
| –84.8 | 2.034, 2.035, 2.101, 2.100 | 2.053, 2.054 | 2.852, 2.853 | 6.4 |
|
| –75.8 | 2.004, 2.005, 2.064, 2.134 | 2.067, 2.066 | 2.786, 2.896 | 4.7 |
|
| –93.4 | 2.005, 2.006, 2.085, 2.099 | 2.122, 2.138 | 2.917, 2.923 | 12.3 |
|
| –81.3 | 1.991, 2.001, 2.113, 2.123 | 2.053, 2.082 | 2.806, 2.932 | 13.4 |
Figure 9Optimized geometries for Pt cluster (k = 2~5) on the di-vacancy-type defect in the singlet state (Pt-C94H26). Optimized bond lengths are given in Table 7.
Figure 11Optimized geometries for the singlet Pt atom on the mono-, di-, and tri-vacancy-type defects in the triplet state (Pt1-C95H26, Pt1-C94H26, and Pt1-C93H26, respectively). Optimized bond lengths are given in Table 3–Table 5.
Figure 12Orbital energies (eV) in the frontier orbital region of the optimized Pt6-C95H26, Pt6-C94H26, and Pt6-C93H26 configurations whose structures are given in Figure 5–Figure 7. The HOMO-LUMO gaps are given. Orbitals originated from 5d(Pt) orbitals are denoted by blue bars, and those with no or less 5d(Pt) orbital contribution are denoted by black bars.
Figure 13Frontier orbitals (the HOMO and LUMO) in the Pt6(i)-C94H26(B) configuration (Figure 6) are given as a representative Pt6-C96–H26 configuration.
Energy difference between the singlet and triplet states in the Pt6-C96–H26 configurations (ΔEstate in kcal/mol) a.
| Pt6(i)-(A) | Pt6(i)-(B) | Pt6(ii) | Pt6(iii) | |
|---|---|---|---|---|
|
| –14.3 | –17.8 | –14.0 | b |
|
| –23.3 | –16.2 | –23.3 | –38.5 |
|
| –15.0 | –23.7 | –13.7 | b |
a ΔEstate(Pt6-C96–H26) = Etotal(triplet state) – Etotal(singlet state). Negative ΔEstate values indicate that the triplet state of a Pt6-C96–H26 configuration is energetically stable relative to the singlet state. ΔEstate in kcal/mol; b we could not obtain the optimized geometry in the triplet state.
Figure 14Spin density distributions of representative Pt6-C96–H26 configurations (Pt6(i) cluster on C95H26 or C94H26 in two binding fashions, displayed in Figure 5 and Figure 6). Isosurface α- and β-spins are given by pink and blue, respectively.
Figure 15Spin density distributions of representative Pt13-C96–H26 configurations. Isosurface α- and β-spins are given by pink and blue, respectively.