Literature DB >> 22750879

Expression, purification, crystallization and preliminary X-ray diffraction analysis of Deg5 from Arabidopsis thaliana.

Haitian Fan1, Wei Sun, Zhe Sun, Feng Gao, Weimin Gong.   

Abstract

Arabidopsis thaliana Deg5 is an ATP-independent serine protease which resides on the luminal side of the thylakoid in chloroplasts. Deg5 and another Deg/HtrA-family protease, Deg8, have a synergistic function in the turnover of the D1 protein of photosystem II (PSII), which is prone to damage arising from high light exposure. An inactive mutant of the protein, Deg5(S266A), was overexpressed in Escherichia coli. After purification and crystallization, crystals that diffracted to 2.6 Å resolution were obtained. The crystals belonged to the monoclinic space group C2, with unit-cell parameters a = 109.1, b = 126.0, c = 83.3 Å, β = 102.9°, and contained three molecules in the asymmetric unit. The calculated Matthews coefficient and solvent content were 3.0 Å(3) Da(-1) and 59.0%, respectively.

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Year:  2012        PMID: 22750879      PMCID: PMC3388936          DOI: 10.1107/S1744309112023603

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

Review 1.  Posttranslational quality control: folding, refolding, and degrading proteins.

Authors:  S Wickner; M R Maurizi; S Gottesman
Journal:  Science       Date:  1999-12-03       Impact factor: 47.728

2.  Crystal structure of DegP (HtrA) reveals a new protease-chaperone machine.

Authors:  Tobias Krojer; Marta Garrido-Franco; Robert Huber; Michael Ehrmann; Tim Clausen
Journal:  Nature       Date:  2002-03-28       Impact factor: 49.962

3.  Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction.

Authors:  Jean-Benoît Peltier; Olof Emanuelsson; Dário E Kalume; Jimmy Ytterberg; Giulia Friso; Andrea Rudella; David A Liberles; Linda Söderberg; Peter Roepstorff; Gunnar von Heijne; Klaas J van Wijk
Journal:  Plant Cell       Date:  2002-01       Impact factor: 11.277

4.  Love it or cleave it: tough choices in protein quality control.

Authors:  Michael R Maurizi
Journal:  Nat Struct Biol       Date:  2002-06

Review 5.  The HtrA family of proteases: implications for protein composition and cell fate.

Authors:  Tim Clausen; Chris Southan; Michael Ehrmann
Journal:  Mol Cell       Date:  2002-09       Impact factor: 17.970

Review 6.  Cutting edge of chloroplast proteolysis.

Authors:  Zach Adam; Adrian K Clarke
Journal:  Trends Plant Sci       Date:  2002-10       Impact factor: 18.313

7.  Structural adaptation of the plant protease Deg1 to repair photosystem II during light exposure.

Authors:  Juliane Kley; Bastian Schmidt; Boril Boyanov; Peggy C Stolt-Bergner; Rebecca Kirk; Michael Ehrmann; Ronit R Knopf; Leah Naveh; Zach Adam; Tim Clausen
Journal:  Nat Struct Mol Biol       Date:  2011-05-01       Impact factor: 15.369

8.  Proteome map of the chloroplast lumen of Arabidopsis thaliana.

Authors:  Maria Schubert; Ulrika A Petersson; Brian J Haas; Christiane Funk; Wolfgang P Schröder; Thomas Kieselbach
Journal:  J Biol Chem       Date:  2001-11-21       Impact factor: 5.157

9.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

10.  Crystal structure of the protease domain of a heat-shock protein HtrA from Thermotoga maritima.

Authors:  Dong Young Kim; Dong Ryoung Kim; Sung Chul Ha; Neratur K Lokanath; Chang Jun Lee; Hye-Yeon Hwang; Kyeong Kyu Kim
Journal:  J Biol Chem       Date:  2002-11-27       Impact factor: 5.157

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  1 in total

1.  The structures of Arabidopsis Deg5 and Deg8 reveal new insights into HtrA proteases.

Authors:  Wei Sun; Feng Gao; Haitian Fan; Xiaoyue Shan; Renhua Sun; Lin Liu; Weimin Gong
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-11
  1 in total

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