Literature DB >> 22750857

Crystallization and preliminary X-ray crystallographic analysis of Pz peptidase B from Geobacillus collagenovorans MO-1.

Hiroaki Nakano1, Allin Hosokawa, Ryuji Tagawa, Koji Inaka, Kazunori Ohta, Toru Nakatsu, Hiroaki Kato, Kunihiko Watanabe.   

Abstract

Pz peptidase B is an intracellular M3 metallopeptidase that is found together with Pz peptidase A in the thermophile Geobacillus collagenovorans MO-1 and recognizes collagen-specific tripeptide units (-Gly-Pro-X-). These peptidases have low homology in their primary structures; however, their cleavage patterns towards peptide substrates are similar. In this work, Pz peptidase B was crystallized using the counter-diffusion method. Data were collected to a resolution of 1.6 Å at 100 K from a crystal obtained in the Japanese Experiment Module (JEM; also known as `Kibo') at the International Space Station (ISS). The crystal belonged to the trigonal space group P3(1)21, with unit-cell parameters a = b = 87.64, c = 210.5 Å. A complete data set was also obtained from crystals of selenomethionine-substituted protein.

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Year:  2012        PMID: 22750857      PMCID: PMC3388914          DOI: 10.1107/S1744309112018969

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

1.  Structure of neurolysin reveals a deep channel that limits substrate access.

Authors:  C K Brown; K Madauss; W Lian; M R Beck; W D Tolbert; D W Rodgers
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-06       Impact factor: 11.205

2.  Two thimet oligopeptidase-like Pz peptidases produced by a collagen-degrading thermophile, Geobacillus collagenovorans MO-1.

Authors:  Ryoma Miyake; Yasushi Shigeri; Yoshiro Tatsu; Noboru Yumoto; Midori Umekawa; Yoshiyuki Tsujimoto; Hiroshi Matsui; Kunihiko Watanabe
Journal:  J Bacteriol       Date:  2005-06       Impact factor: 3.490

3.  Characteristic features in the structure and collagen-binding ability of a thermophilic collagenolytic protease from the thermophile Geobacillus collagenovorans MO-1.

Authors:  Yuichi Itoi; Mano Horinaka; Yoshiyuki Tsujimoto; Hiroshi Matsui; Kunihiko Watanabe
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

4.  Crystallization and preliminary X-ray crystallographic studies of Pz peptidase A from Geobacillus collagenovorans MO-1.

Authors:  Akio Kawasaki; Hiroaki Nakano; Yoshiyuki Tsujimoto; Hiroshi Matsui; Tetsuya Shimizu; Toru Nakatsu; Hiroaki Kato; Kunihiko Watanabe
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-01-27

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  The exquisite structure and reaction mechanism of bacterial Pz-peptidase A toward collagenous peptides: X-ray crystallographic structure analysis of PZ-peptidase a reveals differences from mammalian thimet oligopeptidase.

Authors:  Akio Kawasaki; Hiroaki Nakano; Allin Hosokawa; Toru Nakatsu; Hiroaki Kato; Kunihiko Watanabe
Journal:  J Biol Chem       Date:  2010-09-03       Impact factor: 5.157

7.  A thermostable collagenolytic protease with a very large molecular mass produced by thermophilic Bacillus sp. strain MO-1.

Authors:  M Okamoto; Y Yonejima; Y Tsujimoto; Y Suzuki; K Watanabe
Journal:  Appl Microbiol Biotechnol       Date:  2001-10       Impact factor: 4.813

8.  Crystal structure of human thimet oligopeptidase provides insight into substrate recognition, regulation, and localization.

Authors:  Kallol Ray; Christina S Hines; Jerry Coll-Rodriguez; David W Rodgers
Journal:  J Biol Chem       Date:  2004-03-03       Impact factor: 5.157

9.  Human thimet oligopeptidase.

Authors:  P M Dando; M A Brown; A J Barrett
Journal:  Biochem J       Date:  1993-09-01       Impact factor: 3.857

10.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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