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Literature DB >> 22750789

Genome-wide roles of Foxa2 in directing liver specification.

Chenhuan Xu, Xiaowen Lu, Eric Z Chen, Zhiying He, Borjigin Uyunbilig, Guangpeng Li, Yue Ma, Lijian Hui, Bin Xie, Yuan Gao, Xiaoyan Ding, Yiping Hu, Ping Hu, Jing-Dong J Han, Xin Wang.

Abstract

Entities: Gene

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Year: 2012 PMID： 22750789 PMCID： PMC3612007 DOI： 10.1093/jmcb/mjs037

Source DB: PubMed Journal: J Mol Cell Biol ISSN： 1759-4685 Impact factor: 6.216

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13 in total

1. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4.

Authors: Lisa Ann Cirillo; Frank Robert Lin; Isabel Cuesta; Dara Friedman; Michal Jarnik; Kenneth S Zaret
Journal: Mol Cell Date: 2002-02 Impact factor: 17.970

2. Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver.

Authors: Brad G Hoffman; Gordon Robertson; Bogard Zavaglia; Mike Beach; Rebecca Cullum; Sam Lee; Galina Soukhatcheva; Leping Li; Elizabeth D Wederell; Nina Thiessen; Mikhail Bilenky; Timothee Cezard; Angela Tam; Baljit Kamoh; Inanc Birol; Derek Dai; Yongjun Zhao; Martin Hirst; C Bruce Verchere; Cheryl D Helgason; Marco A Marra; Steven J M Jones; Pamela A Hoodless
Journal: Genome Res Date: 2010-06-15 Impact factor: 9.043

3. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Authors: Mathieu Lupien; Jérôme Eeckhoute; Clifford A Meyer; Qianben Wang; Yong Zhang; Wei Li; Jason S Carroll; X Shirley Liu; Myles Brown
Journal: Cell Date: 2008-03-21 Impact factor: 41.582

Review 4. The Fox genes in the liver: from organogenesis to functional integration.

Authors: John Le Lay; Klaus H Kaestner
Journal: Physiol Rev Date: 2010-01 Impact factor: 37.312

5. Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.

Authors: R Gualdi; P Bossard; M Zheng; Y Hamada; J R Coleman; K S Zaret
Journal: Genes Dev Date: 1996-07-01 Impact factor: 11.361

6. The initiation of liver development is dependent on Foxa transcription factors.

Authors: Catherine S Lee; Joshua R Friedman; James T Fulmer; Klaus H Kaestner
Journal: Nature Date: 2005-06-16 Impact factor: 49.962

7. PAGE: parametric analysis of gene set enrichment.

Authors: Seon-Young Kim; David J Volsky
Journal: BMC Bioinformatics Date: 2005-06-08 Impact factor: 3.169

8. Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing.

Authors: Ola Wallerman; Mehdi Motallebipour; Stefan Enroth; Kalicharan Patra; Madhu Sudhan Reddy Bysani; Jan Komorowski; Claes Wadelius
Journal: Nucleic Acids Res Date: 2009-12 Impact factor: 16.971

9. Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing.

Authors: Elizabeth D Wederell; Mikhail Bilenky; Rebecca Cullum; Nina Thiessen; Melis Dagpinar; Allen Delaney; Richard Varhol; YongJun Zhao; Thomas Zeng; Bridget Bernier; Matthew Ingham; Martin Hirst; Gordon Robertson; Marco A Marra; Steven Jones; Pamela A Hoodless
Journal: Nucleic Acids Res Date: 2008-07-08 Impact factor: 16.971

Genome-wide roles of Foxa2 in directing liver specification.

1. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4.

2. Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver.

3. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Review 4. The Fox genes in the liver: from organogenesis to functional integration.

5. Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.

6. The initiation of liver development is dependent on Foxa transcription factors.

7. PAGE: parametric analysis of gene set enrichment.

8. Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing.

9. Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing.

10. Model-based analysis of ChIP-Seq (MACS).

Review 1. Forkhead box protein A2 and T helper type 2-mediated pulmonary inflammation.

2. RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements.

Review 3. Pioneer transcription factors in cell reprogramming.

4. Tumorigenic potential is restored during differentiation in fusion-reprogrammed cancer cells.

5. Lhx1 functions together with Otx2, Foxa2, and Ldb1 to govern anterior mesendoderm, node, and midline development.