Literature DB >> 22749790

Prototype PowerPlex® Y23 System: A concordance study.

Carey Davis1, Jianye Ge, Cynthia Sprecher, Abirami Chidambaram, Jonelle Thompson, Margaret Ewing, Patricia Fulmer, Dawn Rabbach, Douglas Storts, Bruce Budowle.   

Abstract

The Prototype PowerPlex(®) Y23 System (Promega Corporation, Madison, WI) is a polymerase chain reaction-based amplification kit that targets the 23 Y STR loci DYS19, DYS385a/b, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS481, DYS533, DYS549, DYS570, DYS576, DYS635, DYS643, and Y-GATA-H4. A total of 951 samples from six populations were typed to evaluate the kit and examine concordance for 17 of the loci that are in common with those that can be typed using the AmpFlSTR(®) Yfiler™ kit (Life Technologies, Carlsbad, CA). A total of 16,167 loci were analyzed for each multiplex, and overall concordance was observed. Because of different kit designs, and although concordant for the genetic type, discordant calls can occur due to a deletion at the DYS448 locus. Users should take into consideration such nomenclature anomalies when comparing Y STR profiles. This new kit allows a large battery of Y STR loci to be analyzed using the same basic technologies already employed in forensic laboratories.
Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

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Year:  2012        PMID: 22749790     DOI: 10.1016/j.fsigen.2012.06.005

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  6 in total

1.  Genetic data and de novo mutation rates in father-son pairs of 23 Y-STR loci in Southern Brazil population.

Authors:  Nicole Nascimento Da Fré; Rodrigo Rodenbusch; André Zoratto Gastaldo; Erin Hanson; Jack Ballantyne; Clarice Sampaio Alho
Journal:  Int J Legal Med       Date:  2014-11-13       Impact factor: 2.686

2.  DNA profiling in peripheral blood, buccal swabs, hair follicles and semen from a patient following allogeneic hematopoietic stem cells transplantation.

Authors:  Ya-Ting Li; Ming-Kun Xie; Jin Wu
Journal:  Biomed Rep       Date:  2014-08-05

3.  Preliminary assessment of the prototype Yfiler® Plus kit in a population study of Northern Italian males.

Authors:  Enrica Ottaviani; Stefano Vernarecci; Paola Asili; Alessandro Agostino; Paola Montagna
Journal:  Int J Legal Med       Date:  2014-09-06       Impact factor: 2.686

4.  A global analysis of Y-chromosomal haplotype diversity for 23 STR loci.

Authors:  Josephine Purps; Sabine Siegert; Sascha Willuweit; Marion Nagy; Cíntia Alves; Renato Salazar; Sheila M T Angustia; Lorna H Santos; Katja Anslinger; Birgit Bayer; Qasim Ayub; Wei Wei; Yali Xue; Chris Tyler-Smith; Miriam Baeta Bafalluy; Begoña Martínez-Jarreta; Balazs Egyed; Beate Balitzki; Sibylle Tschumi; David Ballard; Denise Syndercombe Court; Xinia Barrantes; Gerhard Bäßler; Tina Wiest; Burkhard Berger; Harald Niederstätter; Walther Parson; Carey Davis; Bruce Budowle; Helen Burri; Urs Borer; Christoph Koller; Elizeu F Carvalho; Patricia M Domingues; Wafaa Takash Chamoun; Michael D Coble; Carolyn R Hill; Daniel Corach; Mariela Caputo; Maria E D'Amato; Sean Davison; Ronny Decorte; Maarten H D Larmuseau; Claudio Ottoni; Olga Rickards; Di Lu; Chengtao Jiang; Tadeusz Dobosz; Anna Jonkisz; William E Frank; Ivana Furac; Christian Gehrig; Vincent Castella; Branka Grskovic; Cordula Haas; Jana Wobst; Gavrilo Hadzic; Katja Drobnic; Katsuya Honda; Yiping Hou; Di Zhou; Yan Li; Shengping Hu; Shenglan Chen; Uta-Dorothee Immel; Rüdiger Lessig; Zlatko Jakovski; Tanja Ilievska; Anja E Klann; Cristina Cano García; Peter de Knijff; Thirsa Kraaijenbrink; Aikaterini Kondili; Penelope Miniati; Maria Vouropoulou; Lejla Kovacevic; Damir Marjanovic; Iris Lindner; Issam Mansour; Mouayyad Al-Azem; Ansar El Andari; Miguel Marino; Sandra Furfuro; Laura Locarno; Pablo Martín; Gracia M Luque; Antonio Alonso; Luís Souto Miranda; Helena Moreira; Natsuko Mizuno; Yasuki Iwashima; Rodrigo S Moura Neto; Tatiana L S Nogueira; Rosane Silva; Marina Nastainczyk-Wulf; Jeanett Edelmann; Michael Kohl; Shengjie Nie; Xianping Wang; Baowen Cheng; Carolina Núñez; Marian Martínez de Pancorbo; Jill K Olofsson; Niels Morling; Valerio Onofri; Adriano Tagliabracci; Horolma Pamjav; Antonia Volgyi; Gusztav Barany; Ryszard Pawlowski; Agnieszka Maciejewska; Susi Pelotti; Witold Pepinski; Monica Abreu-Glowacka; Christopher Phillips; Jorge Cárdenas; Danel Rey-Gonzalez; Antonio Salas; Francesca Brisighelli; Cristian Capelli; Ulises Toscanini; Andrea Piccinini; Marilidia Piglionica; Stefania L Baldassarra; Rafal Ploski; Magdalena Konarzewska; Emila Jastrzebska; Carlo Robino; Antti Sajantila; Jukka U Palo; Evelyn Guevara; Jazelyn Salvador; Maria Corazon De Ungria; Jae Joseph Russell Rodriguez; Ulrike Schmidt; Nicola Schlauderer; Pekka Saukko; Peter M Schneider; Miriam Sirker; Kyoung-Jin Shin; Yu Na Oh; Iulia Skitsa; Alexandra Ampati; Tobi-Gail Smith; Lina Solis de Calvit; Vlastimil Stenzl; Thomas Capal; Andreas Tillmar; Helena Nilsson; Stefania Turrina; Domenico De Leo; Andrea Verzeletti; Venusia Cortellini; Jon H Wetton; Gareth M Gwynne; Mark A Jobling; Martin R Whittle; Denilce R Sumita; Paulina Wolańska-Nowak; Rita Y Y Yong; Michael Krawczak; Michael Nothnagel; Lutz Roewer
Journal:  Forensic Sci Int Genet       Date:  2014-04-28       Impact factor: 4.882

5.  Novel Y-chromosome Short Tandem Repeat Variants Detected Through the Use of Massively Parallel Sequencing.

Authors:  David H Warshauer; Jennifer D Churchill; Nicole Novroski; Jonathan L King; Bruce Budowle
Journal:  Genomics Proteomics Bioinformatics       Date:  2015-09-21       Impact factor: 7.691

6.  Analysis of genetic admixture in Uyghur using the 26 Y-STR loci system.

Authors:  Yingnan Bian; Suhua Zhang; Wei Zhou; Qi Zhao; Ruxin Zhu; Zheng Wang; Yuzhen Gao; Jie Hong; Daru Lu; Chengtao Li
Journal:  Sci Rep       Date:  2016-02-04       Impact factor: 4.379

  6 in total

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