Literature DB >> 22740671

Genome sequence of the marine bacterium Marinilabilia salmonicolor JCM 21150T.

Shailesh Kumar1, Srikrishna Subramanian, Gajendra Pal Singh Raghava, Anil Kumar Pinnaka.   

Abstract

We report the 4.98-Mb genome sequence of Marinilabilia salmonicolor JCM 21150(T), which was isolated from marine mud in the year 1961. The draft genome of strain Marinilabilia salmonicolor JCM 21150(T) contains 4,982,627 bp with a G+C content of 41.92% and 4,227 protein coding genes, 52 tRNAs, and 3 rRNAs.

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Year:  2012        PMID： 22740671      PMCID： PMC3393510          DOI： 10.1128/JB.00649-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.

Authors:  Ravi K Patel; Mukesh Jain
Journal:  PLoS One       Date:  2012-02-01       Impact factor: 3.240

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov.

Authors:  H E Müller; D J Brenner; G R Fanning; P A Grimont; P Kämpfer
Journal:  Int J Syst Bacteriol       Date:  1996-01

5.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

6.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  6 in total
  2 in total

1.  The mannitol utilization system of the marine bacterium Zobellia galactanivorans.

Authors:  Agnès Groisillier; Aurore Labourel; Gurvan Michel; Thierry Tonon
Journal:  Appl Environ Microbiol       Date:  2014-12-29       Impact factor: 4.792

2.  Bioinformatics analysis of bacterial annexins--putative ancestral relatives of eukaryotic annexins.

Authors:  Praveen Kumar Kodavali; Małgorzata Dudkiewicz; Sławomir Pikuła; Krzysztof Pawłowski
Journal:  PLoS One       Date:  2014-01-16       Impact factor: 3.240
  2 in total

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