Literature DB >> 22740657

Complete genome sequence of Borrelia crocidurae.

Haitham Elbir1, Grégory Gimenez, Catherine Robert, Sven Bergström, Sally Cutler, Didier Raoult, Michel Drancourt.   

Abstract

We announce the draft genome sequence of Borrelia crocidurae (strain Achema). The 1,557,560-bp genome (27% GC content) comprises one 919,477-bp linear chromosome and 638,083-bp plasmids that together carry 1,472 open reading frames, 32 tRNAs, and three complete rRNAs, with almost complete colinearity between B. crocidurae and Borrelia duttonii chromosomes.

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Year:  2012        PMID： 22740657      PMCID： PMC3393517          DOI： 10.1128/JB.00118-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  CDD: a database of conserved domain alignments with links to domain three-dimensional structure.

Authors:  Aron Marchler-Bauer; Anna R Panchenko; Benjamin A Shoemaker; Paul A Thiessen; Lewis Y Geer; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

3.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  Pfam: a comprehensive database of protein domain families based on seed alignments.

Authors:  E L Sonnhammer; S R Eddy; R Durbin
Journal:  Proteins       Date:  1997-07

5.  Phylogenetic analysis of a virulent Borrelia species isolated from patients with relapsing fever.

Authors:  A Toledo; P Anda; R Escudero; C Larsson; S Bergstrom; J L Benach
Journal:  J Clin Microbiol       Date:  2010-05-12       Impact factor: 5.948

6.  Molecular identification of Borrelia crocidurae in a patient returning from Senegal.

Authors:  Matthieu Million; Cécile Cazorla; Barbara Doudier; Bernard La Scola; Philippe Parola; Michel Drancourt; Philippe Brouqui
Journal:  BMJ Case Rep       Date:  2009-02-20

7.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

Review 8.  New concepts for the old challenge of African relapsing fever borreliosis.

Authors:  S J Cutler; A Abdissa; J-F Trape
Journal:  Clin Microbiol Infect       Date:  2009-05       Impact factor: 8.067

9.  The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii.

Authors:  Magali Lescot; Stéphane Audic; Catherine Robert; Thi Tien Nguyen; Guillaume Blanc; Sally J Cutler; Patrick Wincker; Arnaud Couloux; Jean-Michel Claverie; Didier Raoult; Michel Drancourt
Journal:  PLoS Genet       Date:  2008-09-12       Impact factor: 5.917

10.  E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI).

Authors:  Pere Puigbò; Ignacio G Bravo; Santiago Garcia-Vallvé
Journal:  BMC Bioinformatics       Date:  2008-01-29       Impact factor: 3.169
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  15 in total

1.  Fibronectin-binding protein of Borrelia hermsii expressed in the blood of mice with relapsing fever.

Authors:  Eric R G Lewis; Renee A Marcsisin; Shelley A Campeau Miller; Fong Hue; April Phillips; David P Aucoin; Alan G Barbour
Journal:  Infect Immun       Date:  2014-03-31       Impact factor: 3.441

2.  Large linear plasmids of Borrelia species that cause relapsing fever.

Authors:  Shelley Campeau Miller; Stephen F Porcella; Sandra J Raffel; Tom G Schwan; Alan G Barbour
Journal:  J Bacteriol       Date:  2013-06-07       Impact factor: 3.490

Review 3.  Relapsing fever borreliae in Africa.

Authors:  Haitham Elbir; Didier Raoult; Michel Drancourt
Journal:  Am J Trop Med Hyg       Date:  2013-08       Impact factor: 2.345

Review 4.  Genetic Manipulation of Borrelia.

Authors:  Patricia A Rosa; Mollie W Jewett
Journal:  Curr Issues Mol Biol       Date:  2020-12-10       Impact factor: 2.081

5.  A phylogenomic and molecular signature based approach for characterization of the phylum Spirochaetes and its major clades: proposal for a taxonomic revision of the phylum.

Authors:  Radhey S Gupta; Sharmeen Mahmood; Mobolaji Adeolu
Journal:  Front Microbiol       Date:  2013-07-30       Impact factor: 5.640

6.  Genome Sequence of the Asiatic Species Borrelia persica.

Authors:  Haitham Elbir; Pär Larsson; Johan Normark; Mukunda Upreti; Edward Korenberg; Christer Larsson; Sven Bergström
Journal:  Genome Announc       Date:  2014-01-09

Review 7.  Laboratory Diagnosis of Tick-Borne African Relapsing Fevers: Latest Developments.

Authors:  Aurélien Fotso Fotso; Michel Drancourt
Journal:  Front Public Health       Date:  2015-11-11

8.  Genome Sequence of the Relapsing Fever Borreliosis Species Borrelia hispanica.

Authors:  Haitham Elbir; Pär Larsson; Mukunda Upreti; Johan Normark; Sven Bergström
Journal:  Genome Announc       Date:  2014-01-16

9.  BorreliaBase: a phylogeny-centered browser of Borrelia genomes.

Authors:  Lia Di; Pedro E Pagan; Daniel Packer; Che L Martin; Saymon Akther; Girish Ramrattan; Emmanuel F Mongodin; Claire M Fraser; Steven E Schutzer; Benjamin J Luft; Sherwood R Casjens; Wei-Gang Qiu
Journal:  BMC Bioinformatics       Date:  2014-07-03       Impact factor: 3.169

10.  African relapsing Fever borreliae genomospecies revealed by comparative genomics.

Authors:  Haitham Elbir; Laurent Abi-Rached; Pierre Pontarotti; Niyaz Yoosuf; Michel Drancourt
Journal:  Front Public Health       Date:  2014-05-14
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