Literature DB >> 22740642

Model and test in a fungus of the probability that beneficial mutations survive drift.

Danna R Gifford1, J Arjan G M de Visser, Lindi M Wahl.   

Abstract

Determining the probability of fixation of beneficial mutations is critically important for building predictive models of adaptive evolution. Despite considerable theoretical work, models of fixation probability have stood untested for nearly a century. However, recent advances in experimental and theoretical techniques permit the development of models with testable predictions. We developed a new model for the probability of surviving genetic drift, a major component of fixation probability, for novel beneficial mutations in the fungus Aspergillus nidulans, based on the life-history characteristics of its colony growth on a solid surface. We tested the model by measuring the probability of surviving drift in 11 adapted strains introduced into wild-type populations of different densities. We found that the probability of surviving drift increased with mutant invasion fitness, and decreased with wild-type density, as expected. The model accurately predicted the survival probability for the majority of mutants, yielding one of the first direct tests of the extinction probability of beneficial mutations.

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Year:  2012        PMID: 22740642      PMCID: PMC3565475          DOI: 10.1098/rsbl.2012.0310

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  7 in total

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Authors:  Anne Pringle; John Taylor
Journal:  Trends Microbiol       Date:  2002-10       Impact factor: 17.079

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Journal:  J Evol Biol       Date:  2005-07       Impact factor: 2.411

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Authors:  S Wright
Journal:  Genetics       Date:  1931-03       Impact factor: 4.562

Review 4.  The fixation probability of beneficial mutations.

Authors:  Z Patwa; L M Wahl
Journal:  J R Soc Interface       Date:  2008-11-06       Impact factor: 4.118

5.  Fixation probability for lytic viruses: the attachment-lysis model.

Authors:  Z Patwa; L M Wahl
Journal:  Genetics       Date:  2008-08-30       Impact factor: 4.562

Review 6.  Asexual sporulation in Aspergillus nidulans.

Authors:  T H Adams; J K Wieser; J H Yu
Journal:  Microbiol Mol Biol Rev       Date:  1998-03       Impact factor: 11.056

7.  Fixation probabilities depend on life history: fecundity, generation time and survival in a burst-death model.

Authors:  H K Alexander; L M Wahl
Journal:  Evolution       Date:  2008-07       Impact factor: 3.694

  7 in total
  10 in total

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Journal:  Biol Lett       Date:  2012-10-31       Impact factor: 3.703

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6.  Diminishing-returns epistasis among random beneficial mutations in a multicellular fungus.

Authors:  Sijmen Schoustra; Sungmin Hwang; Joachim Krug; J Arjan G M de Visser
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8.  Stochastic establishment of β-lactam-resistant Escherichia coli mutants reveals conditions for collective resistance.

Authors:  Manja Saebelfeld; Suman G Das; Arno Hagenbeek; Joachim Krug; J Arjan G M de Visser
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9.  An experimental test on the probability of extinction of new genetic variants.

Authors:  Ivo M Chelo; Judit Nédli; Isabel Gordo; Henrique Teotónio
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Pathogen evolution in finite populations: slow and steady spreads the best.

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Journal:  J R Soc Interface       Date:  2018-10-03       Impact factor: 4.118

  10 in total

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