Literature DB >> 22735583

Tuning gene expression with nucleosome-disfavoring sequences.

Timothy Palpant, Jason Lieb.   

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Year:  2012        PMID： 22735583     DOI： 10.1038/ng.2328

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  12 in total

1.  Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast.

Authors:  Tali Raveh-Sadka; Michal Levo; Uri Shabi; Boaz Shany; Leeat Keren; Maya Lotan-Pompan; Danny Zeevi; Eilon Sharon; Adina Weinberger; Eran Segal
Journal:  Nat Genet       Date:  2012-05-27       Impact factor: 38.330

2.  Incorporating nucleosomes into thermodynamic models of transcription regulation.

Authors:  Tali Raveh-Sadka; Michal Levo; Eran Segal
Journal:  Genome Res       Date:  2009-05-18       Impact factor: 9.043

3.  An ensemble model of competitive multi-factor binding of the genome.

Authors:  Todd Wasson; Alexander J Hartemink
Journal:  Genome Res       Date:  2009-08-31       Impact factor: 9.043

4.  Signal-dependent dynamics of transcription factor translocation controls gene expression.

Authors:  Nan Hao; Erin K O'Shea
Journal:  Nat Struct Mol Biol       Date:  2011-12-18       Impact factor: 15.369

5.  Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast.

Authors:  K Struhl
Journal:  Proc Natl Acad Sci U S A       Date:  1985-12       Impact factor: 11.205

6.  Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

Authors:  V Iyer; K Struhl
Journal:  EMBO J       Date:  1995-06-01       Impact factor: 11.598

7.  Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development.

Authors:  Tommy Kaplan; Xiao-Yong Li; Peter J Sabo; Sean Thomas; John A Stamatoyannopoulos; Mark D Biggin; Michael B Eisen
Journal:  PLoS Genet       Date:  2011-02-03       Impact factor: 5.917

8.  Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters.

Authors:  Denis Tolkunov; Karl A Zawadzki; Cara Singer; Nils Elfving; Alexandre V Morozov; James R Broach
Journal:  Mol Biol Cell       Date:  2011-04-20       Impact factor: 4.138

9.  Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

Authors:  Sam John; Peter J Sabo; Robert E Thurman; Myong-Hee Sung; Simon C Biddie; Thomas A Johnson; Gordon L Hager; John A Stamatoyannopoulos
Journal:  Nat Genet       Date:  2011-01-23       Impact factor: 38.330

10.  Distinct modes of regulation by chromatin encoded through nucleosome positioning signals.

Authors:  Yair Field; Noam Kaplan; Yvonne Fondufe-Mittendorf; Irene K Moore; Eilon Sharon; Yaniv Lubling; Jonathan Widom; Eran Segal
Journal:  PLoS Comput Biol       Date:  2008-11-07       Impact factor: 4.475
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  1 in total

1.  Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning.

Authors:  Tomáš Dršata; Nada Špačková; Petr Jurečka; Marie Zgarbová; Jiří Šponer; Filip Lankaš
Journal:  Nucleic Acids Res       Date:  2014-05-14       Impact factor: 16.971
  1 in total

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