Literature DB >> 22733402

Centromeric heterochromatin assembly in fission yeast--balancing transcription, RNA interference and chromatin modification.

Benjamin J Alper1, Brandon R Lowe, Janet F Partridge.   

Abstract

Distinct regions of the eukaryotic genome are packaged into different types of chromatin, with euchromatin representing gene rich, transcriptionally active regions and heterochromatin more condensed and gene poor. The assembly and maintenance of heterochromatin is important for many aspects of genome control, including silencing of gene transcription, suppression of recombination, and to ensure proper chromosome segregation. The precise mechanisms underlying heterochromatin establishment and maintenance are still unclear, but much progress has been made towards understanding this process during the last few years, particularly from studies performed in fission yeast. In this review, we hope to provide a conceptual model of centromeric heterochromatin in fission yeast that integrates our current understanding of the competing forces of transcription, replication, and RNA decay that influence its assembly and propagation.

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Year:  2012        PMID: 22733402      PMCID: PMC3580186          DOI: 10.1007/s10577-012-9288-x

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  103 in total

1.  Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly.

Authors:  J Nakayama ; J C Rice; B D Strahl; C D Allis; S I Grewal
Journal:  Science       Date:  2001-03-15       Impact factor: 47.728

2.  Requirement of heterochromatin for cohesion at centromeres.

Authors:  P Bernard; J F Maure; J F Partridge; S Genier; J P Javerzat; R C Allshire
Journal:  Science       Date:  2001-10-11       Impact factor: 47.728

3.  Small RNAs correspond to centromere heterochromatic repeats.

Authors:  Brenda J Reinhart; David P Bartel
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

4.  cis-acting DNA from fission yeast centromeres mediates histone H3 methylation and recruitment of silencing factors and cohesin to an ectopic site.

Authors:  Janet F Partridge; Kristin S C Scott; Andrew J Bannister; Tony Kouzarides; Robin C Allshire
Journal:  Curr Biol       Date:  2002-10-01       Impact factor: 10.834

5.  Establishment and maintenance of a heterochromatin domain.

Authors:  Ira M Hall; Gurumurthy D Shankaranarayana; Ken-Ichi Noma; Nabieh Ayoub; Amikam Cohen; Shiv I S Grewal
Journal:  Science       Date:  2002-09-05       Impact factor: 47.728

6.  Functional divergence between histone deacetylases in fission yeast by distinct cellular localization and in vivo specificity.

Authors:  Pernilla Bjerling; Rebecca A Silverstein; Geneviève Thon; Amy Caudy; Shiv Grewal; Karl Ekwall
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

7.  Recruitment of cohesin to heterochromatic regions by Swi6/HP1 in fission yeast.

Authors:  Nobuhiro Nonaka; Tomoya Kitajima; Shihori Yokobayashi; Guoping Xiao; Masayuki Yamamoto; Shiv I S Grewal; Yoshinori Watanabe
Journal:  Nat Cell Biol       Date:  2002-01       Impact factor: 28.824

8.  The genome sequence of Schizosaccharomyces pombe.

Authors:  V Wood; R Gwilliam; M-A Rajandream; M Lyne; R Lyne; A Stewart; J Sgouros; N Peat; J Hayles; S Baker; D Basham; S Bowman; K Brooks; D Brown; S Brown; T Chillingworth; C Churcher; M Collins; R Connor; A Cronin; P Davis; T Feltwell; A Fraser; S Gentles; A Goble; N Hamlin; D Harris; J Hidalgo; G Hodgson; S Holroyd; T Hornsby; S Howarth; E J Huckle; S Hunt; K Jagels; K James; L Jones; M Jones; S Leather; S McDonald; J McLean; P Mooney; S Moule; K Mungall; L Murphy; D Niblett; C Odell; K Oliver; S O'Neil; D Pearson; M A Quail; E Rabbinowitsch; K Rutherford; S Rutter; D Saunders; K Seeger; S Sharp; J Skelton; M Simmonds; R Squares; S Squares; K Stevens; K Taylor; R G Taylor; A Tivey; S Walsh; T Warren; S Whitehead; J Woodward; G Volckaert; R Aert; J Robben; B Grymonprez; I Weltjens; E Vanstreels; M Rieger; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; A Düsterhöft; C Fritzc; E Holzer; D Moestl; H Hilbert; K Borzym; I Langer; A Beck; H Lehrach; R Reinhardt; T M Pohl; P Eger; W Zimmermann; H Wedler; R Wambutt; B Purnelle; A Goffeau; E Cadieu; S Dréano; S Gloux; V Lelaure; S Mottier; F Galibert; S J Aves; Z Xiang; C Hunt; K Moore; S M Hurst; M Lucas; M Rochet; C Gaillardin; V A Tallada; A Garzon; G Thode; R R Daga; L Cruzado; J Jimenez; M Sánchez; F del Rey; J Benito; A Domínguez; J L Revuelta; S Moreno; J Armstrong; S L Forsburg; L Cerutti; T Lowe; W R McCombie; I Paulsen; J Potashkin; G V Shpakovski; D Ussery; B G Barrell; P Nurse; L Cerrutti
Journal:  Nature       Date:  2002-02-21       Impact factor: 49.962

9.  RNA interference is required for normal centromere function in fission yeast.

Authors:  Tom Volpe; Vera Schramke; Georgina L Hamilton; Sharon A White; Grace Teng; Robert A Martienssen; Robin C Allshire
Journal:  Chromosome Res       Date:  2003       Impact factor: 5.239

10.  Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi.

Authors:  Thomas A Volpe; Catherine Kidner; Ira M Hall; Grace Teng; Shiv I S Grewal; Robert A Martienssen
Journal:  Science       Date:  2002-08-22       Impact factor: 47.728

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  16 in total

1.  CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing.

Authors:  Canan Kuscu; Mikel Zaratiegui; Hyun Soo Kim; David A Wah; Robert A Martienssen; Thomas Schalch; Leemor Joshua-Tor
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

2.  SHREC Silences Heterochromatin via Distinct Remodeling and Deacetylation Modules.

Authors:  Godwin Job; Christiane Brugger; Tao Xu; Brandon R Lowe; Yvan Pfister; Chunxu Qu; Sreenath Shanker; José I Baños Sanz; Janet F Partridge; Thomas Schalch
Journal:  Mol Cell       Date:  2016-04-21       Impact factor: 17.970

3.  Overlapping Roles in Chromosome Segregation for Heterochromatin Protein 1 (Swi6) and DDK in Schizosaccharomyces pombe.

Authors:  Kuo-Fang Shen; Susan L Forsburg
Journal:  Genetics       Date:  2019-04-18       Impact factor: 4.562

Review 4.  Structural and functional specificity of H3K36 methylation.

Authors:  Ulysses Tsz Fung Lam; Bryan Kok Yan Tan; John Jia Xin Poh; Ee Sin Chen
Journal:  Epigenetics Chromatin       Date:  2022-05-18       Impact factor: 5.465

Review 5.  HP1a: a structural chromosomal protein regulating transcription.

Authors:  Joel C Eissenberg; Sarah C R Elgin
Journal:  Trends Genet       Date:  2014-02-17       Impact factor: 11.639

6.  Fanconi Anemia FANCM/FNCM-1 and FANCD2/FCD-2 Are Required for Maintaining Histone Methylation Levels and Interact with the Histone Demethylase LSD1/SPR-5 in Caenorhabditis elegans.

Authors:  Hyun-Min Kim; Sara E Beese-Sims; Monica P Colaiácovo
Journal:  Genetics       Date:  2018-03-27       Impact factor: 4.562

Review 7.  RNA matchmaking in chromatin regulation.

Authors:  Stephen K Wu; Justin T Roberts; Maggie M Balas; Aaron M Johnson
Journal:  Biochem Soc Trans       Date:  2020-12-18       Impact factor: 5.407

8.  Mutations disrupting histone methylation have different effects on replication timing in S. pombe centromere.

Authors:  Pao-Chen Li; Marc D Green; Susan L Forsburg
Journal:  PLoS One       Date:  2013-05-01       Impact factor: 3.240

9.  Silencing of Transposable Elements Mediated by 5-mC and Compensation of the Heterochromatin Content by Presence of B Chromosomes in Astyanax scabripinnis.

Authors:  Patrícia Barbosa; Zelinda Schemczssen-Graeff; André Marques; Maelin da Silva; Giovani Marino Favero; Bernardo Passos Sobreiro; Mara Cristina de Almeida; Orlando Moreira-Filho; Duílio Mazzoni Zerbinato de Andrade Silva; Fábio Porto-Foresti; Fausto Foresti; Roberto Ferreira Artoni
Journal:  Cells       Date:  2021-05-11       Impact factor: 6.600

10.  Mutation of histone H3 serine 86 disrupts GATA factor Ams2 expression and precise chromosome segregation in fission yeast.

Authors:  Kim Kiat Lim; Terenze Yao Rui Ong; Yue Rong Tan; Eugene Guorong Yang; Bingbing Ren; Kwi Shan Seah; Zhe Yang; Tsu Soo Tan; Brian W Dymock; Ee Sin Chen
Journal:  Sci Rep       Date:  2015-09-15       Impact factor: 4.379

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