Literature DB >> 22732690

ClassAMP: a prediction tool for classification of antimicrobial peptides.

Shaini Joseph1, Shreyas Karnik, Pravin Nilawe, V K Jayaraman, Susan Idicula-Thomas.   

Abstract

Antimicrobial peptides (AMPs) are gaining popularity as anti-infective agents. Information on sequence features that contribute to target specificity of AMPs will aid in accelerating drug discovery programs involving them. In this study, an algorithm called ClassAMP using Random Forests (RFs) and Support Vector Machines (SVMs) has been developed to predict the propensity of a protein sequence to have antibacterial, antifungal, or antiviral activity. ClassAMP is available at http://www.bicnirrh.res.in/classamp/.

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Year:  2012        PMID: 22732690     DOI: 10.1109/TCBB.2012.89

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  24 in total

1.  Collection of antimicrobial peptides database and its derivatives: Applications and beyond.

Authors:  Faiza Hanif Waghu; Susan Idicula-Thomas
Journal:  Protein Sci       Date:  2019-09-30       Impact factor: 6.725

Review 2.  A review on antimicrobial peptides databases and the computational tools.

Authors:  Shahin Ramazi; Neda Mohammadi; Abdollah Allahverdi; Elham Khalili; Parviz Abdolmaleki
Journal:  Database (Oxford)       Date:  2022-03-19       Impact factor: 4.462

3.  Imbalanced multi-label learning for identifying antimicrobial peptides and their functional types.

Authors:  Weizhong Lin; Dong Xu
Journal:  Bioinformatics       Date:  2016-08-26       Impact factor: 6.937

4.  Empirical comparison of web-based antimicrobial peptide prediction tools.

Authors:  Musa Nur Gabere; William Stafford Noble
Journal:  Bioinformatics       Date:  2017-07-01       Impact factor: 6.937

5.  An Efficient Evaluation System Accelerates α-Helical Antimicrobial Peptide Discovery and Its Application to Global Human Genome Mining.

Authors:  Licheng Liu; Caiyun Wang; Mengyue Zhang; Zixuan Zhang; Yingying Wu; Yixuan Zhang
Journal:  Front Microbiol       Date:  2022-04-25       Impact factor: 6.064

6.  Prediction of antimicrobial peptides based on sequence alignment and support vector machine-pairwise algorithm utilizing LZ-complexity.

Authors:  Xin Yi Ng; Bakhtiar Affendi Rosdi; Shahriza Shahrudin
Journal:  Biomed Res Int       Date:  2015-02-23       Impact factor: 3.411

7.  Myticalins: A Novel Multigenic Family of Linear, Cationic Antimicrobial Peptides from Marine Mussels (Mytilus spp.).

Authors:  Gabriele Leoni; Andrea De Poli; Mario Mardirossian; Stefano Gambato; Fiorella Florian; Paola Venier; Daniel N Wilson; Alessandro Tossi; Alberto Pallavicini; Marco Gerdol
Journal:  Mar Drugs       Date:  2017-08-22       Impact factor: 5.118

8.  Prediction and Activity of a Cationic α-Helix Antimicrobial Peptide ZM-804 from Maize.

Authors:  Mohamed F Hassan; Abdelrahman M Qutb; Wubei Dong
Journal:  Int J Mol Sci       Date:  2021-03-05       Impact factor: 5.923

9.  Antimicrobial peptides design by evolutionary multiobjective optimization.

Authors:  Giuseppe Maccari; Mariagrazia Di Luca; Riccardo Nifosí; Francesco Cardarelli; Giovanni Signore; Claudia Boccardi; Angelo Bifone
Journal:  PLoS Comput Biol       Date:  2013-09-05       Impact factor: 4.475

10.  Recent trends in antimicrobial peptide prediction using machine learning techniques.

Authors:  Yash Shah; Deepak Sehgal; Jayaraman K Valadi
Journal:  Bioinformation       Date:  2017-12-31
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